Wall clock time and date at job start Tue Mar 31 2020 13:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21293 * 120.00345 * 2 1 4 4 C 1.46793 * 119.99825 * 179.97438 * 2 1 3 5 5 C 1.40012 * 120.22224 * 0.02562 * 4 2 1 6 6 C 1.37673 * 119.88240 * 179.97438 * 5 4 2 7 7 C 1.38635 * 120.33597 * 359.97438 * 6 5 4 8 8 C 1.38050 * 120.45286 * 0.02562 * 7 6 5 9 9 C 1.38683 * 120.11330 * 359.97438 * 8 7 6 10 10 O 1.35601 * 120.17278 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99687 * 359.96090 * 10 9 8 12 12 C 1.53001 * 109.47161 * 179.97438 * 11 10 9 13 13 O 1.45204 * 109.46931 * 65.00058 * 12 11 10 14 14 C 1.34226 * 116.99883 * 179.97438 * 13 12 11 15 15 O 1.20830 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99742 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47111 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00045 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99959 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99890 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99910 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00010 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47119 * 89.99584 * 22 20 18 24 24 H 1.48498 * 109.47365 * 210.00025 * 22 20 18 25 25 H 1.48501 * 109.47310 * 329.99803 * 22 20 18 26 26 H 1.09005 * 109.47344 * 270.00310 * 1 2 3 27 27 H 1.08998 * 109.47307 * 29.99710 * 1 2 3 28 28 H 1.08998 * 109.47341 * 150.00066 * 1 2 3 29 29 H 1.08006 * 120.06526 * 359.94996 * 5 4 2 30 30 H 1.08000 * 119.83508 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.76892 * 179.74631 * 7 6 5 32 32 H 1.07999 * 119.94057 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47110 * 300.00217 * 11 10 9 34 34 H 1.09000 * 109.47284 * 59.99932 * 11 10 9 35 35 H 1.08994 * 109.46935 * 184.99973 * 12 11 10 36 36 H 1.09000 * 109.46885 * 305.00255 * 12 11 10 37 37 H 1.09003 * 109.47360 * 300.00211 * 16 14 13 38 38 H 1.08998 * 109.47275 * 60.00008 * 16 14 13 39 39 H 0.96993 * 119.99764 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5455 -2.4865 0.0006 6 6 2.2409 -3.6747 0.0006 7 6 3.6272 -3.6747 0.0000 8 6 4.3269 -2.4846 0.0000 9 6 3.6453 -1.2768 0.0000 10 8 4.3313 -0.1071 -0.0005 11 6 5.7578 -0.1917 -0.0002 12 6 6.3523 1.2181 -0.0015 13 8 6.0071 1.8901 1.2385 14 6 6.4561 3.1451 1.3969 15 8 7.1154 3.6651 0.5281 16 6 6.1379 3.9054 2.6585 17 16 6.8771 5.5554 2.5711 18 6 6.3622 6.2040 4.1263 19 1 5.7681 5.5979 4.7942 20 6 6.7203 7.4940 4.4931 21 7 6.3353 7.9788 5.6547 22 14 7.7473 8.5425 3.3376 23 1 6.8503 9.3131 2.4394 24 1 8.5803 9.4821 4.1303 25 1 8.6278 7.6658 2.5244 26 1 -0.3634 0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.4655 -2.4919 0.0010 30 1 1.7037 -4.6116 0.0010 31 1 4.1635 -4.6121 0.0042 32 1 5.4068 -2.4942 0.0000 33 1 6.0899 -0.7257 0.8901 34 1 6.0903 -0.7267 -0.8898 35 1 7.4368 1.1549 -0.0908 36 1 5.9505 1.7810 -0.8440 37 1 5.0570 3.9971 2.7646 38 1 6.5432 3.3704 3.5172 39 1 6.5858 8.8800 5.9112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:29 Heat of formation + Delta-G solvation = -154.877472 kcal Electronic energy + Delta-G solvation = -23785.150701 eV Core-core repulsion = 19977.115480 eV Total energy + Delta-G solvation = -3808.035221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72135 -41.37282 -39.72242 -38.45891 -37.57062 -34.71916 -33.08316 -32.63940 -31.23373 -30.51395 -29.87649 -27.92452 -25.24573 -24.46788 -22.94818 -22.33048 -20.87998 -19.99839 -19.35251 -18.86006 -17.82855 -17.61228 -17.24740 -17.14740 -16.98435 -16.70754 -16.01757 -15.81429 -15.73283 -15.51069 -15.16581 -15.03415 -14.93940 -14.46726 -14.01456 -13.63742 -13.58594 -13.40200 -13.09564 -13.05089 -12.99072 -12.94617 -12.80189 -12.51078 -12.22220 -12.12744 -11.90494 -11.76305 -11.66348 -11.20850 -10.67849 -10.59652 -10.03905 -9.26245 -9.10282 -8.54991 -6.29251 -0.26801 0.43257 0.72678 1.01490 1.30426 1.33738 1.47760 1.51761 1.79681 2.05376 2.21846 2.60660 2.82058 2.82777 3.17000 3.47022 3.67141 3.85184 3.90375 3.96240 4.04068 4.14606 4.18035 4.20135 4.33317 4.35316 4.41192 4.46836 4.57252 4.61528 4.66418 4.96787 5.10623 5.15614 5.27025 5.36984 5.49847 5.67229 5.78682 6.08454 6.34055 6.56560 6.70424 6.88350 8.57608 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.002427 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.041075 B =11532.408474 C =12274.204952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.378 3.622 3 O -0.500 6.500 4 C -0.240 4.240 5 C -0.030 4.030 6 C -0.173 4.173 7 C -0.044 4.044 8 C -0.234 4.234 9 C 0.155 3.845 10 O -0.313 6.313 11 C 0.057 3.943 12 C 0.061 3.939 13 O -0.350 6.350 14 C 0.491 3.509 15 O -0.516 6.516 16 C -0.091 4.091 17 S -0.157 6.157 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.914 5.914 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.255 1.255 25 H -0.234 1.234 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -30.607 -14.414 34.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.259 3.741 3 O -0.378 6.378 4 C -0.241 4.241 5 C -0.048 4.048 6 C -0.191 4.191 7 C -0.061 4.061 8 C -0.252 4.252 9 C 0.107 3.893 10 O -0.226 6.226 11 C -0.018 4.018 12 C -0.013 4.013 13 O -0.267 6.267 14 C 0.334 3.666 15 O -0.405 6.405 16 C -0.239 4.239 17 S 0.070 5.930 18 C -0.682 4.682 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.551 5.551 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.179 1.179 25 H -0.157 1.157 26 H 0.128 0.872 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.187 0.813 30 H 0.180 0.820 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.823 -29.104 -15.383 33.836 hybrid contribution -0.211 0.339 0.995 1.072 sum -8.034 -28.765 -14.388 33.151 Atomic orbital electron populations 1.22256 0.90719 1.06036 1.05907 1.23055 0.93443 0.87291 0.70312 1.90639 1.73233 1.35838 1.38137 1.20301 0.91051 0.96857 1.15909 1.21716 1.01654 0.89553 0.91861 1.21493 0.94397 0.99127 1.04043 1.21650 0.94945 0.98042 0.91502 1.21557 1.01747 0.91479 1.10428 1.19755 0.91633 0.85612 0.92254 1.86332 1.20472 1.28838 1.86956 1.23196 0.78193 0.95340 1.05044 1.23402 1.01714 0.91990 0.84146 1.86542 1.70957 1.27097 1.42130 1.22804 0.75707 0.80330 0.87793 1.90646 1.37359 1.68997 1.43500 1.22928 1.06542 0.97446 0.97025 1.84551 1.71018 1.11283 1.26193 1.22405 1.39681 1.03498 1.02572 0.91896 1.25586 0.96007 0.97854 0.96484 1.70010 1.45398 1.17935 1.21801 0.85855 0.80408 0.80268 0.79759 1.18658 1.17919 1.15743 0.87205 0.90082 0.86397 0.81285 0.82002 0.82228 0.83150 0.89003 0.86019 0.86528 0.91232 0.86627 0.85444 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 9.75 71.23 0.69 -1.86 16 2 C 0.38 9.11 7.22 27.92 0.20 9.32 16 3 O -0.50 -17.90 15.91 17.88 0.28 -17.62 16 4 C -0.24 -4.83 5.88 -20.07 -0.12 -4.95 16 5 C -0.03 -0.33 9.36 22.57 0.21 -0.12 16 6 C -0.17 -1.37 10.02 22.23 0.22 -1.14 16 7 C -0.04 -0.40 10.03 22.32 0.22 -0.17 16 8 C -0.23 -3.31 9.03 22.33 0.20 -3.11 16 9 C 0.15 3.41 6.71 22.91 0.15 3.56 16 10 O -0.31 -8.59 8.18 -64.79 -0.53 -9.12 16 11 C 0.06 1.07 5.13 71.98 0.37 1.44 16 12 C 0.06 1.53 5.85 71.98 0.42 1.95 16 13 O -0.35 -11.75 10.19 -48.74 -0.50 -12.24 16 14 C 0.49 19.24 7.97 71.23 0.57 19.81 16 15 O -0.52 -22.39 15.61 21.95 0.34 -22.05 16 16 C -0.09 -3.84 6.27 71.23 0.45 -3.39 16 17 S -0.16 -8.12 18.55 -56.49 -1.05 -9.17 16 18 C -0.53 -31.82 10.04 67.96 0.68 -31.14 16 19 H 0.06 3.98 8.03 -2.91 -0.02 3.96 16 20 C 0.05 2.77 5.50 84.86 0.47 3.23 16 21 N -0.91 -56.28 13.97 21.65 0.30 -55.98 16 22 Si 0.92 45.10 27.74 68.60 1.90 47.00 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.23 -11.36 6.74 99.48 0.67 -10.69 16 26 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 0.66 6.47 -2.39 -0.02 0.64 16 29 H 0.17 0.62 6.36 -2.91 -0.02 0.60 16 30 H 0.16 0.24 8.06 -2.91 -0.02 0.21 16 31 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 32 H 0.15 1.45 6.30 -2.91 -0.02 1.43 16 33 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 34 H 0.12 1.38 7.66 -2.39 -0.02 1.36 16 35 H 0.12 2.35 8.13 -2.39 -0.02 2.33 16 36 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 37 H 0.12 4.77 8.14 -2.39 -0.02 4.75 16 38 H 0.13 4.90 8.14 -2.40 -0.02 4.88 16 39 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -84.64 355.58 6.54 -78.10 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.04 Total: 7.65 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.74 Total: -6.56 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.30 Total: -55.98 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -0.40 Total: -61.03 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.17 kcal Total: -84.64 6.54 -78.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.777 kcal (2) G-P(sol) polarization free energy of solvation -84.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds