Wall clock time and date at job start Tue Mar 31 2020 13:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34027 * 124.50003 * 2 1 4 4 C 1.37194 * 115.15055 * 179.97438 * 3 2 1 5 5 C 1.37185 * 113.24220 * 0.02562 * 4 3 2 6 6 C 1.41231 * 125.48165 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00238 * 359.97225 * 6 5 4 8 8 C 1.50702 * 119.99993 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47143 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47491 * 179.97438 * 9 8 6 11 11 O 1.20762 * 119.99632 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00234 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47011 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47236 * 179.97438 * 13 12 10 15 15 O 1.21215 * 119.99875 * 359.97438 * 14 13 12 16 16 O 1.34304 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.34922 * 117.00073 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99943 * 0.02562 * 17 16 14 19 19 C 1.38749 * 120.00331 * 179.97438 * 17 16 14 20 20 N 1.31446 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00325 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46813 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47161 * 120.00186 * 21 19 17 24 24 H 1.48498 * 109.47224 * 240.00410 * 21 19 17 25 25 S 1.70611 * 124.50266 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47001 * 300.02019 * 1 2 3 28 28 H 1.09001 * 109.47163 * 60.02718 * 1 2 3 29 29 H 1.07997 * 122.42175 * 0.02562 * 3 2 1 30 30 H 1.07999 * 123.38156 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47281 * 299.99725 * 8 6 5 32 32 H 1.09002 * 109.46990 * 60.00057 * 8 6 5 33 33 H 1.09006 * 109.47131 * 300.00360 * 9 8 6 34 34 H 1.09002 * 109.47110 * 60.00156 * 9 8 6 35 35 H 1.08997 * 109.47117 * 300.00132 * 12 10 9 36 36 H 1.08999 * 109.47268 * 60.00107 * 12 10 9 37 37 H 1.08997 * 109.47180 * 299.99961 * 13 12 10 38 38 H 1.08999 * 109.47583 * 60.00162 * 13 12 10 39 39 H 0.97002 * 120.00254 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2662 1.1046 0.0000 4 6 3.6199 0.8817 0.0006 5 6 3.9493 -0.4500 0.0005 6 6 5.2625 -0.9697 0.0004 7 8 6.2142 -0.2152 0.0000 8 6 5.4829 -2.4605 0.0009 9 6 6.9845 -2.7540 0.0001 10 6 7.2051 -4.2448 0.0012 11 8 6.2588 -4.9951 0.0020 12 6 8.6063 -4.7992 0.0001 13 6 8.5498 -6.3282 0.0009 14 6 9.9511 -6.8828 -0.0008 15 8 10.9009 -6.1296 -0.0030 16 8 10.1475 -8.2114 0.0001 17 6 11.4263 -8.6415 -0.0021 18 1 12.2363 -7.9271 -0.0040 19 6 11.7009 -10.0015 -0.0008 20 7 10.7151 -10.8711 0.0020 21 14 13.4714 -10.5971 -0.0031 22 1 14.3869 -9.4278 -0.0055 23 1 13.7195 -11.4168 1.2100 24 1 13.7154 -11.4199 -1.2150 25 16 2.4734 -1.4060 -0.0006 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 1.8428 2.0981 0.0004 30 1 4.3527 1.6750 0.0002 31 1 5.0280 -2.8948 0.8911 32 1 5.0276 -2.8954 -0.8889 33 1 7.4392 -2.3197 -0.8903 34 1 7.4402 -2.3191 0.8897 35 1 9.1322 -4.4559 -0.8907 36 1 9.1342 -4.4544 0.8892 37 1 8.0237 -6.6719 0.8916 38 1 8.0221 -6.6728 -0.8884 39 1 10.9070 -11.8219 0.0025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914907872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:26 Heat of formation + Delta-G solvation = -160.061593 kcal Electronic energy + Delta-G solvation = -22917.013380 eV Core-core repulsion = 19108.753358 eV Total energy + Delta-G solvation = -3808.260022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32049 -40.93910 -40.26346 -38.61059 -37.38485 -34.33029 -34.13732 -33.87718 -33.06787 -29.68936 -28.30383 -27.05522 -25.36645 -24.24645 -22.16515 -21.41649 -20.42143 -19.90061 -19.79960 -18.73301 -18.17384 -17.42601 -17.09092 -16.89002 -16.82908 -16.25944 -16.16093 -15.91944 -15.60757 -15.21063 -14.95979 -14.94437 -14.48694 -14.26636 -14.04183 -13.70519 -13.57460 -13.29693 -13.07114 -12.95050 -12.91517 -12.85632 -12.66536 -12.40188 -12.25912 -12.16129 -12.12880 -11.96687 -11.82825 -11.07022 -10.98371 -10.70828 -10.64480 -9.67500 -9.58953 -8.54637 -6.35145 -0.75828 0.48819 0.89219 0.95444 1.13068 1.29476 1.34388 1.53418 1.63617 1.90848 2.09713 2.53378 2.96612 2.97661 3.45095 3.64477 3.75638 3.82063 4.03812 4.12051 4.23075 4.27514 4.40436 4.45757 4.54097 4.64794 4.71835 4.72105 4.76401 4.80379 4.87624 4.95126 5.03188 5.05856 5.07671 5.17905 5.20322 5.38026 5.82701 6.42740 6.48534 6.65477 6.90516 7.76301 8.66616 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.001722 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.820574 B =16257.530992 C =16920.997480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.181 4.181 3 C -0.178 4.178 4 C -0.040 4.040 5 C -0.346 4.346 6 C 0.429 3.571 7 O -0.487 6.487 8 C -0.161 4.161 9 C -0.153 4.153 10 C 0.375 3.625 11 O -0.478 6.478 12 C -0.152 4.152 13 C -0.086 4.086 14 C 0.396 3.604 15 O -0.579 6.579 16 O -0.249 6.249 17 C -0.422 4.422 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.905 5.905 21 Si 1.020 2.980 22 H -0.263 1.263 23 H -0.260 1.260 24 H -0.260 1.260 25 S 0.247 5.753 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.471 23.263 -0.002 32.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.302 4.302 3 C -0.208 4.208 4 C -0.074 4.074 5 C -0.464 4.464 6 C 0.311 3.689 7 O -0.367 6.367 8 C -0.198 4.198 9 C -0.190 4.190 10 C 0.253 3.747 11 O -0.354 6.354 12 C -0.189 4.189 13 C -0.124 4.124 14 C 0.244 3.756 15 O -0.477 6.477 16 O -0.157 6.157 17 C -0.498 4.498 18 H 0.102 0.898 19 C -0.207 4.207 20 N -0.543 5.543 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.185 1.185 24 H -0.184 1.184 25 S 0.516 5.484 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.620 21.626 -0.003 31.294 hybrid contribution 1.227 1.201 0.001 1.717 sum -21.393 22.827 -0.001 31.285 Atomic orbital electron populations 1.20594 0.85230 1.04373 1.04770 1.24973 1.03261 0.97873 1.04055 1.20164 0.92108 1.00956 1.07530 1.21182 0.97227 0.95225 0.93790 1.24124 0.99778 0.99072 1.23410 1.20212 0.86519 0.91445 0.70733 1.90589 1.44429 1.62365 1.39340 1.21917 0.97888 0.93490 1.06544 1.21856 0.96905 0.93060 1.07213 1.24591 0.89470 0.91699 0.68977 1.90404 1.45311 1.62528 1.37130 1.21878 0.97116 0.92955 1.06991 1.20956 0.89103 0.96137 1.06184 1.24388 0.93404 0.81615 0.76181 1.90515 1.45812 1.59730 1.51654 1.83908 1.31641 1.23403 1.76783 1.21502 0.80983 0.92462 1.54855 0.89827 1.26597 1.05369 0.94044 0.94667 1.70096 1.34200 1.02892 1.47062 0.84536 0.73890 0.78491 0.79216 1.18714 1.18458 1.18445 1.83201 0.92739 1.06530 1.65950 0.90318 0.88708 0.88707 0.81837 0.83159 0.87054 0.87060 0.86552 0.86563 0.86916 0.86911 0.87807 0.87812 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.33 71.24 0.74 0.33 16 2 C -0.18 -1.86 6.28 24.73 0.16 -1.71 16 3 C -0.18 -2.03 9.99 21.06 0.21 -1.82 16 4 C -0.04 -0.63 9.95 21.78 0.22 -0.41 16 5 C -0.35 -5.99 6.23 22.76 0.14 -5.85 16 6 C 0.43 8.59 6.93 26.42 0.18 8.77 16 7 O -0.49 -12.38 16.36 -3.54 -0.06 -12.43 16 8 C -0.16 -2.84 4.28 29.85 0.13 -2.71 16 9 C -0.15 -2.85 4.92 29.85 0.15 -2.70 16 10 C 0.38 8.89 7.16 29.10 0.21 9.10 16 11 O -0.48 -13.70 15.61 -1.46 -0.02 -13.73 16 12 C -0.15 -4.25 4.93 29.85 0.15 -4.10 16 13 C -0.09 -3.14 5.10 29.85 0.15 -2.99 16 14 C 0.40 19.93 7.91 71.24 0.56 20.49 16 15 O -0.58 -31.03 15.22 20.76 0.32 -30.71 16 16 O -0.25 -15.01 9.75 14.91 0.15 -14.86 16 17 C -0.42 -26.07 9.65 67.94 0.66 -25.42 16 18 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 19 C -0.01 -0.40 5.49 84.87 0.47 0.07 16 20 N -0.90 -54.57 13.67 21.62 0.30 -54.27 16 21 Si 1.02 43.98 29.55 68.60 2.03 46.01 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 S 0.25 3.11 22.35 -56.49 -1.26 1.84 16 26 H 0.08 0.27 8.11 -2.39 -0.02 0.25 16 27 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 30 H 0.15 2.27 8.02 -2.91 -0.02 2.25 16 31 H 0.11 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.11 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.12 1.99 8.10 -2.38 -0.02 1.97 16 34 H 0.12 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.11 3.04 8.10 -2.39 -0.02 3.02 16 36 H 0.11 3.04 8.10 -2.39 -0.02 3.02 16 37 H 0.10 3.64 8.10 -2.39 -0.02 3.62 16 38 H 0.10 3.64 8.10 -2.39 -0.02 3.62 16 39 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.25 363.40 6.62 -72.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.07 Total: 14.48 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.11 Total: -8.95 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.30 Total: -54.27 kcal Atomic # 8 Polarization: -72.12 SS G_CDS: 0.38 Total: -71.73 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.26 Total: 1.84 kcal Total: -79.25 6.62 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914907872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.433 kcal (2) G-P(sol) polarization free energy of solvation -79.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds