Wall clock time and date at job start Tue Mar 31 2020 14:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00427 * 2 1 4 4 H 1.48505 * 109.47533 * 269.99839 * 3 2 1 5 5 H 1.48505 * 109.47138 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47437 * 149.99535 * 3 2 1 7 7 C 1.38800 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99944 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00056 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47147 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47468 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47485 * 180.02562 * 12 11 10 14 14 C 1.34718 * 117.00175 * 180.02562 * 13 12 11 15 15 O 1.21483 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.47644 * 119.99816 * 180.27300 * 14 13 12 17 17 C 1.41219 * 126.17541 * 179.72262 * 16 14 13 18 18 C 1.36830 * 104.89791 * 179.97438 * 17 16 14 19 19 N 1.37844 * 107.45925 * 0.02562 * 18 17 16 20 20 N 1.28081 * 109.01217 * 359.71880 * 19 18 17 21 21 C 1.46769 * 122.99852 * 179.97438 * 19 18 17 22 22 C 1.52970 * 109.78759 * 338.48038 * 21 19 18 23 23 C 1.53283 * 110.60319 * 53.54060 * 22 21 19 24 24 C 1.46827 * 130.32711 * 180.02562 * 18 17 16 25 25 O 1.21335 * 122.51911 * 349.50426 * 24 18 17 26 26 H 0.97006 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47366 * 59.99618 * 10 9 7 28 28 H 1.09010 * 109.47001 * 299.99760 * 10 9 7 29 29 H 1.08998 * 109.47304 * 59.99574 * 11 10 9 30 30 H 1.08996 * 109.46925 * 299.99643 * 11 10 9 31 31 H 1.08998 * 109.47123 * 59.99564 * 12 11 10 32 32 H 1.09010 * 109.46923 * 299.99903 * 12 11 10 33 33 H 1.07997 * 127.54920 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.41778 * 218.38334 * 21 19 18 35 35 H 1.09000 * 109.36482 * 98.54420 * 21 19 18 36 36 H 1.09002 * 109.24806 * 293.25734 * 22 21 19 37 37 H 1.08995 * 109.21704 * 173.81641 * 22 21 19 38 38 H 1.08999 * 109.77965 * 176.56858 * 23 22 21 39 39 H 1.09000 * 109.77923 * 55.76326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5155 -3.8915 0.0005 11 6 1.9790 -5.3243 -0.0001 12 6 3.1509 -6.3079 -0.0008 13 8 2.6417 -7.6676 -0.0020 14 6 3.5513 -8.6614 -0.0021 15 8 4.7375 -8.3991 -0.0017 16 6 3.1065 -10.0692 -0.0094 17 6 3.9424 -11.2074 -0.0160 18 6 3.0848 -12.2736 -0.0207 19 7 1.8010 -11.7718 -0.0176 20 7 1.8533 -10.4921 -0.0055 21 6 0.6084 -12.6272 -0.0216 22 6 0.9678 -14.0143 -0.5570 23 6 2.1501 -14.6031 0.2210 24 6 3.3615 -13.7156 -0.0278 25 8 4.4723 -14.1657 -0.2169 26 1 -0.4851 0.8401 -0.0004 27 1 3.1242 -3.7314 0.8905 28 1 3.1242 -3.7314 -0.8896 29 1 1.3706 -5.4841 -0.8903 30 1 1.3702 -5.4846 0.8897 31 1 3.7597 -6.1483 0.8892 32 1 3.7595 -6.1474 -0.8908 33 1 5.0221 -11.2311 -0.0171 34 1 -0.1560 -12.1803 -0.6573 35 1 0.2260 -12.7190 0.9950 36 1 1.2350 -13.9346 -1.6107 37 1 0.1057 -14.6732 -0.4537 38 1 2.3557 -15.6143 -0.1300 39 1 1.9183 -14.6216 1.2859 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923377297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:34 Heat of formation + Delta-G solvation = -56.508873 kcal Electronic energy + Delta-G solvation = -23201.086452 eV Core-core repulsion = 19429.609565 eV Total energy + Delta-G solvation = -3771.476888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27457 -40.26175 -39.59573 -36.82703 -36.45140 -33.48002 -32.53592 -32.42991 -31.12718 -28.92157 -26.88934 -25.56296 -24.63997 -23.49834 -22.95753 -21.31339 -20.98178 -19.59181 -17.99341 -17.65789 -17.37308 -17.00365 -16.63786 -16.37920 -15.95084 -15.51334 -15.26546 -14.93590 -14.80645 -14.55383 -14.39620 -14.01299 -13.51360 -13.34820 -13.04415 -12.72690 -12.71815 -12.25667 -12.10896 -12.07129 -11.49503 -11.32774 -11.12629 -10.97605 -10.95404 -10.80140 -10.63458 -10.49851 -10.25774 -9.83150 -9.71344 -9.62435 -9.06292 -8.33622 -6.54638 -6.23399 -3.94174 0.35185 1.04587 1.59832 2.11667 2.47285 2.87608 3.17287 3.22664 3.24484 3.30055 3.43804 3.56557 3.84111 3.91499 4.09504 4.21523 4.28801 4.57520 4.61325 4.68633 4.78892 4.88491 5.00914 5.12179 5.12396 5.15766 5.18306 5.20854 5.40640 5.51775 5.69312 5.80774 5.88035 5.98448 6.17502 6.39265 6.48467 6.69391 6.70522 7.21774 7.60573 7.69127 8.36353 9.23012 10.84760 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037125 B = 0.001774 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.021161 B =15778.222742 C =16472.588981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.072 3.928 13 O -0.339 6.339 14 C 0.555 3.445 15 O -0.498 6.498 16 C -0.016 4.016 17 C -0.081 4.081 18 C -0.090 4.090 19 N -0.256 5.256 20 N -0.190 5.190 21 C 0.115 3.885 22 C -0.132 4.132 23 C -0.167 4.167 24 C 0.431 3.569 25 O -0.430 6.430 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.178 0.822 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 -32.406 0.300 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.254 6.254 14 C 0.397 3.603 15 O -0.384 6.384 16 C -0.170 4.170 17 C -0.109 4.109 18 C -0.210 4.210 19 N -0.053 5.053 20 N -0.032 5.032 21 C -0.004 4.004 22 C -0.170 4.170 23 C -0.205 4.205 24 C 0.305 3.695 25 O -0.300 6.300 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.196 0.804 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.935 -32.282 0.204 32.297 hybrid contribution 2.620 1.245 0.033 2.901 sum 1.685 -31.038 0.237 31.084 Atomic orbital electron populations 1.70017 1.05926 1.27380 1.47179 1.25016 0.95098 0.99120 0.94553 0.86147 0.79445 0.81445 0.78380 1.20255 1.20750 1.19657 1.22705 0.94612 0.90690 1.58608 0.90822 1.84655 1.08836 0.99207 1.96877 1.23182 1.03415 0.96297 1.03389 1.21279 0.96417 0.91443 1.04435 1.23363 0.97929 0.76130 1.02842 1.86602 1.39035 1.16677 1.83062 1.19391 0.83883 0.84051 0.73021 1.90883 1.17443 1.84024 1.46010 1.20864 0.89350 0.92489 1.14309 1.21937 1.01060 0.88306 0.99559 1.22278 0.85542 0.96987 1.16239 1.46539 1.06847 1.03262 1.48616 1.73498 1.22431 0.93882 1.13372 1.22303 0.83941 0.88856 1.05287 1.21904 0.99653 0.94171 1.01254 1.22492 0.93559 1.00827 1.03593 1.21764 0.89868 0.85988 0.71904 1.90643 1.25885 1.77671 1.35839 0.92272 0.91676 0.91686 0.90279 0.90274 0.90866 0.90874 0.80428 0.86644 0.87618 0.89722 0.86918 0.87289 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.12 -3.24 21.44 -107.50 -2.30 -5.55 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.63 5.60 -26.73 -0.15 -1.78 16 12 C 0.07 1.09 5.48 37.16 0.20 1.29 16 13 O -0.34 -5.16 10.23 -40.54 -0.41 -5.58 16 14 C 0.56 8.19 7.97 34.57 0.28 8.46 16 15 O -0.50 -8.16 16.70 -19.25 -0.32 -8.49 16 16 C -0.02 -0.20 7.13 -82.71 -0.59 -0.79 16 17 C -0.08 -0.88 10.84 -38.96 -0.42 -1.30 16 18 C -0.09 -0.79 6.73 -82.20 -0.55 -1.34 16 19 N -0.26 -2.04 3.81 -57.18 -0.22 -2.26 16 20 N -0.19 -2.18 12.04 33.42 0.40 -1.78 16 21 C 0.11 0.32 7.16 -3.91 -0.03 0.29 16 22 C -0.13 -0.10 5.85 -26.60 -0.16 -0.26 16 23 C -0.17 -0.38 6.23 -26.98 -0.17 -0.55 16 24 C 0.43 3.06 7.10 -30.08 -0.21 2.84 16 25 O -0.43 -4.48 17.97 5.51 0.10 -4.38 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.06 1.29 8.14 -51.91 -0.42 0.86 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.11 -0.22 8.14 -51.93 -0.42 -0.65 16 38 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -36.22 358.91 -8.07 -44.30 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -5.04 Total: -5.14 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.39 Total: -7.88 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.92 Total: -29.28 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.64 Total: -18.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.22 -8.07 -44.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923377297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.213 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds