Wall clock time and date at job start Tue Mar 31 2020 14:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00427 * 2 1 4 4 H 1.48505 * 109.47533 * 269.99839 * 3 2 1 5 5 H 1.48505 * 109.47138 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47437 * 149.99535 * 3 2 1 7 7 C 1.38800 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99944 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00056 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47147 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47468 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47485 * 180.02562 * 12 11 10 14 14 C 1.34718 * 117.00175 * 180.02562 * 13 12 11 15 15 O 1.21483 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.47644 * 119.99816 * 180.27300 * 14 13 12 17 17 C 1.41219 * 126.17541 * 179.72262 * 16 14 13 18 18 C 1.36830 * 104.89791 * 179.97438 * 17 16 14 19 19 N 1.37844 * 107.45925 * 0.02562 * 18 17 16 20 20 N 1.28081 * 109.01217 * 359.71880 * 19 18 17 21 21 C 1.46769 * 122.99852 * 179.97438 * 19 18 17 22 22 C 1.52970 * 109.78759 * 338.48038 * 21 19 18 23 23 C 1.53283 * 110.60319 * 53.54060 * 22 21 19 24 24 C 1.46827 * 130.32711 * 180.02562 * 18 17 16 25 25 O 1.21335 * 122.51911 * 349.50426 * 24 18 17 26 26 H 0.97006 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47366 * 59.99618 * 10 9 7 28 28 H 1.09010 * 109.47001 * 299.99760 * 10 9 7 29 29 H 1.08998 * 109.47304 * 59.99574 * 11 10 9 30 30 H 1.08996 * 109.46925 * 299.99643 * 11 10 9 31 31 H 1.08998 * 109.47123 * 59.99564 * 12 11 10 32 32 H 1.09010 * 109.46923 * 299.99903 * 12 11 10 33 33 H 1.07997 * 127.54920 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.41778 * 218.38334 * 21 19 18 35 35 H 1.09000 * 109.36482 * 98.54420 * 21 19 18 36 36 H 1.09002 * 109.24806 * 293.25734 * 22 21 19 37 37 H 1.08995 * 109.21704 * 173.81641 * 22 21 19 38 38 H 1.08999 * 109.77965 * 176.56858 * 23 22 21 39 39 H 1.09000 * 109.77923 * 55.76326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5155 -3.8915 0.0005 11 6 1.9790 -5.3243 -0.0001 12 6 3.1509 -6.3079 -0.0008 13 8 2.6417 -7.6676 -0.0020 14 6 3.5513 -8.6614 -0.0021 15 8 4.7375 -8.3991 -0.0017 16 6 3.1065 -10.0692 -0.0094 17 6 3.9424 -11.2074 -0.0160 18 6 3.0848 -12.2736 -0.0207 19 7 1.8010 -11.7718 -0.0176 20 7 1.8533 -10.4921 -0.0055 21 6 0.6084 -12.6272 -0.0216 22 6 0.9678 -14.0143 -0.5570 23 6 2.1501 -14.6031 0.2210 24 6 3.3615 -13.7156 -0.0278 25 8 4.4723 -14.1657 -0.2169 26 1 -0.4851 0.8401 -0.0004 27 1 3.1242 -3.7314 0.8905 28 1 3.1242 -3.7314 -0.8896 29 1 1.3706 -5.4841 -0.8903 30 1 1.3702 -5.4846 0.8897 31 1 3.7597 -6.1483 0.8892 32 1 3.7595 -6.1474 -0.8908 33 1 5.0221 -11.2311 -0.0171 34 1 -0.1560 -12.1803 -0.6573 35 1 0.2260 -12.7190 0.9950 36 1 1.2350 -13.9346 -1.6107 37 1 0.1057 -14.6732 -0.4537 38 1 2.3557 -15.6143 -0.1300 39 1 1.9183 -14.6216 1.2859 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923377297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:33 Heat of formation + Delta-G solvation = -79.609455 kcal Electronic energy + Delta-G solvation = -23202.088169 eV Core-core repulsion = 19429.609565 eV Total energy + Delta-G solvation = -3772.478604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.99601 -41.41006 -40.23800 -37.93949 -36.94014 -34.92990 -34.58450 -33.18687 -31.80325 -29.39309 -28.29790 -27.56068 -25.58035 -24.07490 -23.48528 -22.73935 -21.89961 -20.28462 -19.54046 -18.64565 -18.47033 -17.97814 -17.63011 -17.23158 -16.89840 -16.48788 -16.23242 -16.10620 -15.94056 -15.77413 -15.35393 -15.03274 -14.55105 -14.27445 -14.18508 -13.83126 -13.72102 -13.29512 -13.15869 -12.95104 -12.64263 -12.50472 -12.43854 -12.41871 -12.30730 -12.13825 -12.05509 -11.56077 -11.50169 -11.14933 -11.04943 -10.60218 -10.42609 -10.36312 -8.68172 -8.38077 -6.14647 -0.29274 0.05981 0.96504 1.28950 1.39869 1.42664 1.48611 1.51708 1.80597 1.85844 2.26913 2.68809 2.88104 2.96442 3.28435 3.49858 3.52262 3.71753 3.83569 3.90980 3.94882 4.07378 4.14987 4.16737 4.21964 4.32022 4.47375 4.50358 4.53914 4.67306 4.86070 4.87838 4.92825 5.00437 5.05302 5.09574 5.28309 5.36638 5.40106 6.14860 6.17899 6.36677 6.63644 7.04352 8.71315 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.037125 B = 0.001774 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.021161 B =15778.222742 C =16472.588981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.091 4.091 11 C -0.085 4.085 12 C 0.079 3.921 13 O -0.344 6.344 14 C 0.556 3.444 15 O -0.522 6.522 16 C -0.044 4.044 17 C -0.102 4.102 18 C -0.087 4.087 19 N -0.235 5.235 20 N -0.207 5.207 21 C 0.096 3.904 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.432 3.568 25 O -0.470 6.470 26 H 0.272 0.728 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.176 0.824 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.125 0.875 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -34.350 0.518 34.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.093 0.907 9 S 0.044 5.956 10 C -0.240 4.240 11 C -0.123 4.123 12 C 0.004 3.996 13 O -0.259 6.259 14 C 0.400 3.600 15 O -0.410 6.410 16 C -0.196 4.196 17 C -0.130 4.130 18 C -0.209 4.209 19 N -0.032 5.032 20 N -0.051 5.051 21 C -0.020 4.020 22 C -0.160 4.160 23 C -0.194 4.194 24 C 0.308 3.692 25 O -0.343 6.343 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.193 0.807 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.620 -34.238 0.422 34.279 hybrid contribution 2.751 1.664 -0.034 3.215 sum 1.130 -32.574 0.388 32.596 Atomic orbital electron populations 1.70145 1.07642 1.28610 1.47863 1.26063 0.96059 1.03099 0.93722 0.85004 0.78154 0.76348 0.78822 1.19295 1.19857 1.18794 1.23063 0.94875 0.91914 1.59009 0.90743 1.84634 1.13086 1.00817 1.97066 1.23064 1.00822 0.96307 1.03832 1.21091 0.96926 0.89830 1.04483 1.23177 0.96909 0.76066 1.03497 1.86582 1.39368 1.16714 1.83250 1.19719 0.83502 0.84665 0.72147 1.90855 1.18261 1.84471 1.47404 1.20656 0.90404 0.91596 1.16906 1.22059 1.01427 0.88708 1.00778 1.22663 0.85581 0.97810 1.14855 1.47156 1.08068 1.02507 1.45519 1.73431 1.21796 0.95711 1.14163 1.22999 0.82415 0.89087 1.07521 1.21989 1.00421 0.93286 1.00318 1.22589 0.91157 1.00257 1.05364 1.22568 0.90874 0.85517 0.70221 1.90634 1.27948 1.77912 1.37787 0.91900 0.91163 0.91175 0.90288 0.90248 0.90246 0.90300 0.80675 0.85372 0.84913 0.90389 0.82714 0.85633 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.74 13.22 21.65 0.29 -54.45 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 0.99 44.16 29.55 68.60 2.03 46.18 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.54 -31.36 9.50 67.95 0.65 -30.71 16 8 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 9 S -0.18 -9.85 21.44 -56.49 -1.21 -11.06 16 10 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.08 -2.82 5.60 30.59 0.17 -2.65 16 12 C 0.08 2.34 5.48 71.98 0.39 2.74 16 13 O -0.34 -10.57 10.23 -56.28 -0.58 -11.15 16 14 C 0.56 16.90 7.97 70.31 0.56 17.46 16 15 O -0.52 -17.72 16.70 19.89 0.33 -17.38 16 16 C -0.04 -1.14 7.13 42.30 0.30 -0.84 16 17 C -0.10 -2.30 10.84 22.67 0.25 -2.06 16 18 C -0.09 -1.47 6.73 40.12 0.27 -1.20 16 19 N -0.24 -3.37 3.81 -334.80 -1.28 -4.65 16 20 N -0.21 -4.66 12.04 -48.18 -0.58 -5.24 16 21 C 0.10 0.19 7.16 86.32 0.62 0.81 16 22 C -0.12 0.34 5.85 30.68 0.18 0.52 16 23 C -0.16 -0.12 6.23 30.43 0.19 0.07 16 24 C 0.43 5.52 7.10 28.42 0.20 5.72 16 25 O -0.47 -9.66 17.97 -3.20 -0.06 -9.72 16 26 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 27 H 0.07 2.75 8.14 -2.40 -0.02 2.73 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.18 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.16 -1.56 8.14 -2.39 -0.02 -1.57 16 38 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: -1.00 -81.49 358.91 4.67 -76.82 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.07 Total: 2.69 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.65 Total: -12.05 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.57 Total: -64.34 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.30 Total: -38.25 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -9.85 SS G_CDS: -1.21 Total: -11.06 kcal Total: -81.49 4.67 -76.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923377297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.788 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds