Wall clock time and date at job start Tue Mar 31 2020 13:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47216 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47364 * 119.99956 * 3 2 1 7 7 C 1.38808 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 189.09577 * 7 2 1 9 9 N 1.36940 * 120.00117 * 9.10297 * 7 2 1 10 10 C 1.48148 * 127.83299 * 15.56943 * 9 7 2 11 11 C 1.54387 * 104.61472 * 140.41895 * 10 9 7 12 12 H 1.09000 * 117.61597 * 242.76121 * 11 10 9 13 13 C 1.54144 * 104.96705 * 23.82732 * 11 10 9 14 14 H 1.09008 * 121.78995 * 222.20060 * 13 11 10 15 15 C 1.48144 * 127.83902 * 195.56925 * 9 7 2 16 16 C 1.52991 * 59.75254 * 114.14054 * 13 11 10 17 17 H 1.09003 * 117.44466 * 252.37110 * 16 13 11 18 18 N 1.46502 * 117.44453 * 107.62869 * 16 13 11 19 19 C 1.34773 * 120.00135 * 135.99897 * 18 16 13 20 20 O 1.21579 * 120.00370 * 0.02562 * 19 18 16 21 21 C 1.47629 * 120.00184 * 179.97438 * 19 18 16 22 22 C 1.39703 * 120.15437 * 0.02562 * 21 19 18 23 23 C 1.37793 * 119.89391 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.20600 * 0.02562 * 23 22 21 25 25 Cl 1.73596 * 119.84502 * 179.97438 * 24 23 22 26 26 C 1.38355 * 120.31154 * 359.97438 * 24 23 22 27 27 C 1.38268 * 120.10354 * 359.73719 * 26 24 23 28 28 F 1.35097 * 120.10204 * 180.27689 * 27 26 24 29 29 H 0.96999 * 119.99948 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.41276 * 21.63181 * 10 9 7 31 31 H 1.09000 * 110.40356 * 259.19721 * 10 9 7 32 32 H 1.08997 * 110.40727 * 338.36829 * 15 9 7 33 33 H 1.09002 * 110.40441 * 100.80114 * 15 9 7 34 34 H 0.97003 * 120.00144 * 315.72202 * 18 16 13 35 35 H 1.07998 * 120.04774 * 359.97438 * 22 21 19 36 36 H 1.07996 * 119.89649 * 180.02562 * 23 22 21 37 37 H 1.07993 * 119.95232 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7102 11 6 0.0639 -3.8173 -1.6162 12 1 -0.1483 -3.6884 -2.6775 13 6 1.2856 -4.5965 -1.0905 14 1 2.0089 -5.0540 -1.7657 15 6 1.8197 -3.7545 0.0888 16 6 -0.1182 -5.1931 -0.9723 17 1 -0.5674 -5.2278 0.0203 18 7 -0.4525 -6.3131 -1.8556 19 6 -1.1060 -7.3855 -1.3664 20 8 -1.4186 -7.4233 -0.1921 21 6 -1.4433 -8.5138 -2.2566 22 6 -1.0862 -8.4736 -3.6066 23 6 -1.4032 -9.5300 -4.4326 24 6 -2.0759 -10.6321 -3.9283 25 17 -2.4712 -11.9575 -4.9774 26 6 -2.4336 -10.6808 -2.5927 27 6 -2.1166 -9.6306 -1.7510 28 9 -2.4611 -9.6807 -0.4457 29 1 -0.4850 0.8400 0.0004 30 1 -0.3433 -1.7022 -1.2912 31 1 -0.7316 -2.7500 0.1081 32 1 2.9092 -3.7784 0.1106 33 1 1.4117 -4.1182 1.0318 34 1 -0.2070 -6.2811 -2.7935 35 1 -0.5624 -7.6160 -4.0021 36 1 -1.1268 -9.4992 -5.4761 37 1 -2.9572 -11.5425 -2.2058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960892583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:12 Heat of formation + Delta-G solvation = 6.536086 kcal Electronic energy + Delta-G solvation = -23749.929187 eV Core-core repulsion = 19855.682123 eV Total energy + Delta-G solvation = -3894.247065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.21086 -40.40210 -39.16926 -38.18829 -36.96947 -34.61960 -32.94156 -31.59858 -31.09901 -30.09986 -27.18776 -25.85047 -24.51813 -23.43708 -21.92126 -20.74884 -20.35650 -19.34775 -18.54149 -17.55932 -17.18352 -16.84064 -16.10854 -16.05372 -15.82365 -15.15021 -14.75821 -14.67896 -14.28188 -13.86014 -13.71846 -13.65234 -13.30757 -12.91470 -12.78395 -12.27595 -12.10972 -11.89273 -11.60052 -11.57094 -11.53806 -11.02375 -10.83508 -10.44622 -10.27101 -10.21382 -10.04280 -9.75994 -9.63163 -9.26935 -9.26030 -8.76342 -8.41061 -6.89710 -5.81926 -3.16447 0.04094 0.51868 1.39986 2.36528 2.85966 3.20338 3.37709 3.42119 3.43393 3.67959 4.01842 4.24442 4.28853 4.33631 4.45017 4.52809 4.82748 5.08992 5.19985 5.31054 5.34380 5.35484 5.42962 5.47486 5.52952 5.79093 5.85627 6.04687 6.06613 6.16228 6.48021 6.66484 6.70463 6.86051 7.30776 7.39720 7.50019 7.68538 8.07872 8.17887 9.08422 9.71176 10.47816 11.32426 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.002184 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.403301 B =12818.753485 C =13223.316468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.178 4.178 12 H 0.104 0.896 13 C -0.180 4.180 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.094 3.906 17 H 0.134 0.866 18 N -0.689 5.689 19 C 0.557 3.443 20 O -0.518 6.518 21 C -0.163 4.163 22 C -0.045 4.045 23 C -0.129 4.129 24 C 0.013 3.987 25 Cl -0.050 7.050 26 C -0.159 4.159 27 C 0.175 3.825 28 F -0.105 7.105 29 H 0.256 0.744 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.397 0.603 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -22.712 -12.209 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.199 4.199 12 H 0.122 0.878 13 C -0.202 4.202 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.151 0.849 18 N -0.338 5.338 19 C 0.343 3.657 20 O -0.394 6.394 21 C -0.168 4.168 22 C -0.064 4.064 23 C -0.148 4.148 24 C -0.014 4.014 25 Cl -0.021 7.021 26 C -0.178 4.178 27 C 0.154 3.846 28 F -0.082 7.082 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.233 0.767 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.534 -22.550 -11.342 25.645 hybrid contribution 0.464 0.634 -0.545 0.956 sum -4.070 -21.916 -11.887 25.262 Atomic orbital electron populations 1.69880 1.05062 1.25619 1.55562 1.24909 0.95657 0.98017 1.01664 0.86177 0.78534 0.82879 0.78016 1.21088 1.21536 1.20942 1.18947 0.90807 0.82260 1.43631 0.90541 1.45169 1.13322 0.99992 1.73127 1.21079 0.87003 0.92377 0.93711 1.24646 1.02192 0.92444 1.00625 0.87815 1.24367 0.90386 1.02289 1.03133 0.87859 1.21137 0.97283 0.85814 0.92942 1.21906 0.98829 0.84690 0.95737 0.84851 1.45240 1.57956 1.17813 1.12776 1.17822 0.78567 0.81939 0.87324 1.90873 1.52557 1.79710 1.16229 1.20266 1.05005 0.96082 0.95422 1.21211 0.95935 0.98227 0.90993 1.21058 0.99936 0.92263 1.01499 1.20835 0.98823 0.90760 0.90966 1.98411 1.92397 1.45836 1.65474 1.20988 1.04640 1.00087 0.92090 1.17434 0.94896 0.93106 0.79136 1.91650 1.88916 1.96090 1.31587 0.93435 0.88978 0.95545 0.92911 0.95370 0.76737 0.83481 0.83413 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.86 55.49 0.60 -25.97 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.70 29.56 -169.99 -5.03 16.67 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.03 7.85 -52.48 -0.41 1.61 16 9 N -0.59 -15.02 3.38 -168.83 -0.57 -15.59 16 10 C 0.18 4.36 5.70 -2.41 -0.01 4.35 16 11 C -0.18 -3.22 7.05 -89.30 -0.63 -3.85 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 13 C -0.18 -3.11 7.05 -89.27 -0.63 -3.74 16 14 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 15 C 0.15 3.23 7.04 -2.39 -0.02 3.22 16 16 C 0.09 1.54 5.98 -67.94 -0.41 1.13 16 17 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 18 N -0.69 -8.84 5.51 -54.82 -0.30 -9.14 16 19 C 0.56 7.91 7.77 -12.43 -0.10 7.81 16 20 O -0.52 -9.57 14.90 5.30 0.08 -9.50 16 21 C -0.16 -1.75 5.88 -104.91 -0.62 -2.37 16 22 C -0.04 -0.32 9.54 -39.20 -0.37 -0.69 16 23 C -0.13 -0.79 9.81 -39.61 -0.39 -1.18 16 24 C 0.01 0.10 6.32 -39.40 -0.25 -0.15 16 25 Cl -0.05 -0.32 28.94 -51.86 -1.50 -1.83 16 26 C -0.16 -1.29 9.79 -39.53 -0.39 -1.68 16 27 C 0.18 1.91 7.28 -38.96 -0.28 1.63 16 28 F -0.10 -1.42 15.55 2.25 0.04 -1.38 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 3.70 6.86 -40.82 -0.28 3.42 16 35 H 0.15 0.67 6.40 -52.49 -0.34 0.33 16 36 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -32.50 335.15 -9.82 -42.31 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.84 Total: 1.59 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -4.34 Total: -2.21 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.27 Total: -50.71 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.50 -9.82 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960892583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.850 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds