Wall clock time and date at job start Tue Mar 31 2020 13:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47216 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47364 * 119.99956 * 3 2 1 7 7 C 1.38808 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 189.09577 * 7 2 1 9 9 N 1.36940 * 120.00117 * 9.10297 * 7 2 1 10 10 C 1.48148 * 127.83299 * 15.56943 * 9 7 2 11 11 C 1.54387 * 104.61472 * 140.41895 * 10 9 7 12 12 H 1.09000 * 117.61597 * 242.76121 * 11 10 9 13 13 C 1.54144 * 104.96705 * 23.82732 * 11 10 9 14 14 H 1.09008 * 121.78995 * 222.20060 * 13 11 10 15 15 C 1.48144 * 127.83902 * 195.56925 * 9 7 2 16 16 C 1.52991 * 59.75254 * 114.14054 * 13 11 10 17 17 H 1.09003 * 117.44466 * 252.37110 * 16 13 11 18 18 N 1.46502 * 117.44453 * 107.62869 * 16 13 11 19 19 C 1.34773 * 120.00135 * 135.99897 * 18 16 13 20 20 O 1.21579 * 120.00370 * 0.02562 * 19 18 16 21 21 C 1.47629 * 120.00184 * 179.97438 * 19 18 16 22 22 C 1.39703 * 120.15437 * 0.02562 * 21 19 18 23 23 C 1.37793 * 119.89391 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.20600 * 0.02562 * 23 22 21 25 25 Cl 1.73596 * 119.84502 * 179.97438 * 24 23 22 26 26 C 1.38355 * 120.31154 * 359.97438 * 24 23 22 27 27 C 1.38268 * 120.10354 * 359.73719 * 26 24 23 28 28 F 1.35097 * 120.10204 * 180.27689 * 27 26 24 29 29 H 0.96999 * 119.99948 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.41276 * 21.63181 * 10 9 7 31 31 H 1.09000 * 110.40356 * 259.19721 * 10 9 7 32 32 H 1.08997 * 110.40727 * 338.36829 * 15 9 7 33 33 H 1.09002 * 110.40441 * 100.80114 * 15 9 7 34 34 H 0.97003 * 120.00144 * 315.72202 * 18 16 13 35 35 H 1.07998 * 120.04774 * 359.97438 * 22 21 19 36 36 H 1.07996 * 119.89649 * 180.02562 * 23 22 21 37 37 H 1.07993 * 119.95232 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7102 11 6 0.0639 -3.8173 -1.6162 12 1 -0.1483 -3.6884 -2.6775 13 6 1.2856 -4.5965 -1.0905 14 1 2.0089 -5.0540 -1.7657 15 6 1.8197 -3.7545 0.0888 16 6 -0.1182 -5.1931 -0.9723 17 1 -0.5674 -5.2278 0.0203 18 7 -0.4525 -6.3131 -1.8556 19 6 -1.1060 -7.3855 -1.3664 20 8 -1.4186 -7.4233 -0.1921 21 6 -1.4433 -8.5138 -2.2566 22 6 -1.0862 -8.4736 -3.6066 23 6 -1.4032 -9.5300 -4.4326 24 6 -2.0759 -10.6321 -3.9283 25 17 -2.4712 -11.9575 -4.9774 26 6 -2.4336 -10.6808 -2.5927 27 6 -2.1166 -9.6306 -1.7510 28 9 -2.4611 -9.6807 -0.4457 29 1 -0.4850 0.8400 0.0004 30 1 -0.3433 -1.7022 -1.2912 31 1 -0.7316 -2.7500 0.1081 32 1 2.9092 -3.7784 0.1106 33 1 1.4117 -4.1182 1.0318 34 1 -0.2070 -6.2811 -2.7935 35 1 -0.5624 -7.6160 -4.0021 36 1 -1.1268 -9.4992 -5.4761 37 1 -2.9572 -11.5425 -2.2058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960892583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:11 Heat of formation + Delta-G solvation = -13.620850 kcal Electronic energy + Delta-G solvation = -23750.803258 eV Core-core repulsion = 19855.682123 eV Total energy + Delta-G solvation = -3895.121135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.08480 -41.45616 -40.29526 -39.35952 -37.54981 -36.16628 -34.52014 -32.73102 -31.82193 -31.53852 -28.93248 -27.68031 -25.48049 -24.19637 -23.32697 -22.01222 -21.78590 -20.90226 -19.40144 -18.85333 -18.40925 -18.05023 -17.22399 -16.99209 -16.69688 -16.55867 -16.02727 -15.85062 -15.54335 -15.16169 -14.78065 -14.63579 -14.61444 -14.31517 -13.76900 -13.60072 -13.35713 -13.27731 -12.89621 -12.76030 -12.68001 -12.45584 -12.16917 -12.11577 -12.05949 -11.89091 -11.68632 -11.24814 -10.85128 -10.70968 -10.25436 -9.99811 -9.71300 -8.92985 -7.91742 -5.28871 -0.66853 -0.08321 0.84268 1.47632 1.49136 1.50737 1.57611 1.75445 2.37286 2.48925 2.85315 2.99247 3.26484 3.38480 3.45980 3.60688 3.79711 3.81624 3.88741 3.91039 4.12178 4.28132 4.37148 4.49255 4.57335 4.73800 4.81469 4.85562 4.88152 4.93873 4.98753 5.26709 5.36467 5.42650 5.43979 5.51056 5.64357 6.16415 6.36438 6.99984 7.04182 7.66996 8.45179 9.22034 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.002184 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.403301 B =12818.753485 C =13223.316468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.173 4.173 12 H 0.134 0.866 13 C -0.161 4.161 14 H 0.141 0.859 15 C 0.146 3.854 16 C 0.112 3.888 17 H 0.103 0.897 18 N -0.670 5.670 19 C 0.556 3.444 20 O -0.571 6.571 21 C -0.180 4.180 22 C -0.030 4.030 23 C -0.115 4.115 24 C 0.016 3.984 25 Cl -0.039 7.039 26 C -0.155 4.155 27 C 0.147 3.853 28 F -0.131 7.131 29 H 0.250 0.750 30 H 0.061 0.939 31 H -0.007 1.007 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.420 0.580 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 -24.205 -15.503 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.060 3.940 11 C -0.194 4.194 12 H 0.152 0.848 13 C -0.182 4.182 14 H 0.159 0.841 15 C 0.021 3.979 16 C 0.005 3.995 17 H 0.121 0.879 18 N -0.321 5.321 19 C 0.345 3.655 20 O -0.451 6.451 21 C -0.184 4.184 22 C -0.048 4.048 23 C -0.133 4.133 24 C -0.012 4.012 25 Cl -0.010 7.010 26 C -0.175 4.175 27 C 0.126 3.874 28 F -0.109 7.109 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.011 0.989 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.197 0.803 36 H 0.199 0.801 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.123 -24.086 -14.686 28.383 hybrid contribution -0.002 0.974 0.467 1.080 sum -3.125 -23.113 -14.219 27.315 Atomic orbital electron populations 1.70090 1.06605 1.25903 1.57035 1.25783 0.96503 1.01428 1.01982 0.85099 0.77154 0.78318 0.78407 1.19906 1.22090 1.20224 1.19363 0.91423 0.83420 1.42825 0.89878 1.45481 1.13773 1.01123 1.73700 1.20821 0.86003 0.93920 0.93208 1.24327 1.03535 0.90668 1.00888 0.84805 1.24271 0.90908 1.01412 1.01600 0.84091 1.21280 0.98116 0.84472 0.94061 1.21397 0.98116 0.85002 0.95019 0.87938 1.44944 1.57491 1.16302 1.13347 1.18373 0.77439 0.82601 0.87108 1.90852 1.54652 1.80799 1.18797 1.20075 1.07031 0.94875 0.96465 1.21523 0.94827 0.99412 0.89082 1.21447 0.98102 0.90948 1.02820 1.21007 0.98186 0.91360 0.90605 1.98425 1.92267 1.45441 1.64879 1.21077 1.04376 0.99633 0.92367 1.17790 0.96496 0.94482 0.78593 1.91580 1.89468 1.96329 1.33516 0.94064 0.92040 0.98906 0.91618 0.96642 0.74093 0.80306 0.80068 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.86 21.65 0.24 -56.85 16 2 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 3 Si 0.98 45.08 29.56 68.60 2.03 47.10 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.24 -13.47 10.35 84.03 0.87 -12.60 16 8 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 9 N -0.62 -31.83 3.38 -688.07 -2.32 -34.15 16 10 C 0.19 9.14 5.70 86.53 0.49 9.64 16 11 C -0.17 -6.09 7.05 -9.94 -0.07 -6.16 16 12 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 13 C -0.16 -5.22 7.05 -9.92 -0.07 -5.29 16 14 H 0.14 3.61 8.14 -2.38 -0.02 3.59 16 15 C 0.15 6.09 7.04 86.55 0.61 6.69 16 16 C 0.11 3.58 5.98 44.99 0.27 3.85 16 17 H 0.10 4.04 7.40 -2.39 -0.02 4.02 16 18 N -0.67 -15.74 5.51 -445.63 -2.46 -18.20 16 19 C 0.56 15.44 7.77 86.72 0.67 16.11 16 20 O -0.57 -21.94 14.90 -3.97 -0.06 -22.00 16 21 C -0.18 -3.59 5.88 -20.05 -0.12 -3.70 16 22 C -0.03 -0.31 9.54 22.52 0.21 -0.09 16 23 C -0.11 -0.90 9.81 22.25 0.22 -0.68 16 24 C 0.02 0.18 6.32 22.39 0.14 0.32 16 25 Cl -0.04 -0.39 28.94 -2.72 -0.08 -0.47 16 26 C -0.16 -2.29 9.79 22.30 0.22 -2.07 16 27 C 0.15 3.16 7.28 22.67 0.17 3.33 16 28 F -0.13 -3.74 15.55 44.97 0.70 -3.04 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.06 3.37 6.51 -2.39 -0.02 3.35 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.42 6.04 6.86 -92.71 -0.64 5.41 16 35 H 0.18 0.62 6.40 -2.91 -0.02 0.60 16 36 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -75.70 335.15 2.61 -73.09 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.50 Total: 8.31 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.07 Total: 6.20 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.55 Total: -109.20 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.70 Total: -3.04 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -75.70 2.61 -73.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960892583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.470 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds