Wall clock time and date at job start Tue Mar 31 2020 13:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47550 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99810 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21571 * 120.00049 * 0.02562 * 19 18 16 21 21 C 1.47697 * 120.00076 * 180.02562 * 19 18 16 22 22 C 1.39655 * 120.15581 * 0.02562 * 21 19 18 23 23 C 1.37974 * 119.86059 * 179.97438 * 22 21 19 24 24 Cl 1.73602 * 119.90060 * 180.02562 * 23 22 21 25 25 C 1.38552 * 120.19342 * 0.02562 * 23 22 21 26 26 C 1.38198 * 120.32869 * 359.97386 * 25 23 22 27 27 C 1.38318 * 120.12781 * 359.79380 * 26 25 23 28 28 F 1.35104 * 120.09751 * 180.25175 * 27 26 25 29 29 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 31 31 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 32 32 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 33 33 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 34 34 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 35 35 H 1.08003 * 120.07345 * 359.95016 * 22 21 19 36 36 H 1.08002 * 119.83983 * 180.02562 * 25 23 22 37 37 H 1.08000 * 119.93599 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1993 -7.5034 0.6949 21 6 -1.9684 -8.4838 -1.2806 22 6 -2.1302 -8.3614 -2.6623 23 6 -2.7182 -9.3837 -3.3783 24 17 -2.9194 -9.2329 -5.0961 25 6 -3.1487 -10.5303 -2.7305 26 6 -2.9924 -10.6598 -1.3635 27 6 -2.4004 -9.6453 -0.6332 28 9 -2.2433 -9.7747 0.7025 29 1 -0.4850 0.8400 0.0004 30 1 -0.7146 -1.7148 -0.3630 31 1 -0.5197 -2.8483 1.0094 32 1 1.8513 -4.1847 1.0018 33 1 2.9071 -3.7537 -0.3789 34 1 -1.0321 -6.1894 -2.0953 35 1 -1.7962 -7.4682 -3.1693 36 1 -3.6078 -11.3272 -3.2966 37 1 -3.3299 -11.5565 -0.8650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960916769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:52 Heat of formation + Delta-G solvation = -8.566340 kcal Electronic energy + Delta-G solvation = -23865.963454 eV Core-core repulsion = 19971.061499 eV Total energy + Delta-G solvation = -3894.901955 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.05208 -41.45776 -40.21268 -39.31230 -37.44656 -36.09173 -34.53791 -32.84490 -31.69846 -31.39065 -28.84383 -27.70342 -25.63639 -24.12050 -23.26380 -22.02816 -21.80767 -20.82533 -19.40655 -18.89963 -18.36112 -18.02791 -17.20165 -16.96702 -16.81503 -16.65409 -15.86601 -15.83781 -15.50882 -15.11832 -14.76828 -14.59354 -14.54629 -14.32234 -13.79829 -13.69018 -13.27651 -13.10972 -13.02322 -12.72914 -12.72480 -12.34449 -12.14163 -12.09910 -11.99984 -11.76568 -11.67364 -11.25744 -10.96644 -10.70014 -10.46491 -9.85637 -9.70414 -8.97227 -7.76209 -5.23654 -0.59524 -0.17580 0.96345 1.48652 1.49884 1.50500 1.59143 1.74406 2.34887 2.49561 2.84605 2.97263 3.24276 3.34117 3.47908 3.53104 3.81546 3.84808 3.87346 3.94759 4.11726 4.26974 4.34991 4.51499 4.53521 4.67215 4.77490 4.84534 4.87377 4.93466 4.97266 5.25721 5.33682 5.42862 5.45354 5.47020 5.76840 6.25041 6.31370 6.98540 7.02023 7.68957 8.43562 9.25378 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.002520 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.384113 B =11106.597958 C =12013.661234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.231 4.231 8 H 0.085 0.915 9 N -0.624 5.624 10 C 0.153 3.847 11 C -0.170 4.170 12 H 0.124 0.876 13 C -0.168 4.168 14 H 0.135 0.865 15 C 0.153 3.847 16 C 0.113 3.887 17 H 0.108 0.892 18 N -0.674 5.674 19 C 0.558 3.442 20 O -0.567 6.567 21 C -0.174 4.174 22 C -0.044 4.044 23 C -0.058 4.058 24 Cl -0.047 7.047 25 C -0.039 4.039 26 C -0.138 4.138 27 C 0.140 3.860 28 F -0.131 7.131 29 H 0.249 0.751 30 H 0.110 0.890 31 H -0.004 1.004 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -24.542 -11.764 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.813 3.187 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.360 4.360 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.191 4.191 12 H 0.141 0.859 13 C -0.189 4.189 14 H 0.152 0.848 15 C 0.027 3.973 16 C 0.006 3.994 17 H 0.126 0.874 18 N -0.324 5.324 19 C 0.346 3.654 20 O -0.447 6.447 21 C -0.178 4.178 22 C -0.063 4.063 23 C -0.085 4.085 24 Cl -0.018 7.018 25 C -0.057 4.057 26 C -0.156 4.156 27 C 0.119 3.881 28 F -0.109 7.109 29 H 0.059 0.941 30 H 0.127 0.873 31 H 0.014 0.986 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.180 0.820 36 H 0.201 0.799 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.202 -24.331 -11.006 27.936 hybrid contribution 0.409 1.253 0.114 1.323 sum -7.793 -23.078 -10.892 26.683 Atomic orbital electron populations 1.69735 1.06217 1.25049 1.58868 1.25605 0.96627 1.00894 1.03015 0.84982 0.77422 0.78806 0.77518 1.21041 1.22130 1.19717 1.19492 0.90974 0.83351 1.42174 0.89769 1.46421 1.02095 1.00473 1.85939 1.22314 0.84880 0.96283 0.93636 1.24339 1.01337 0.90764 1.02697 0.85860 1.24322 0.90151 1.01851 1.02571 0.84772 1.21203 0.96049 0.84393 0.95649 1.21488 0.97216 0.85229 0.95505 0.87442 1.45041 1.59874 1.15697 1.11833 1.18335 0.77895 0.82292 0.86865 1.90841 1.57319 1.80612 1.15908 1.19798 1.07962 0.95340 0.94707 1.21220 0.95190 0.99358 0.90560 1.20904 1.04122 0.96885 0.86608 1.98420 1.95993 1.97891 1.09465 1.21519 0.94618 0.96451 0.93155 1.21433 1.00654 0.99393 0.94166 1.18217 0.97583 0.94546 0.77762 1.91580 1.92864 1.95781 1.30703 0.94114 0.87264 0.98560 0.96061 0.91848 0.74506 0.82021 0.79889 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.97 10.12 21.65 0.22 -55.75 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.23 -12.96 10.42 84.03 0.88 -12.08 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -32.50 3.46 -678.24 -2.35 -34.84 16 10 C 0.15 7.60 6.43 85.80 0.55 8.15 16 11 C -0.17 -6.38 6.96 -9.89 -0.07 -6.45 16 12 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 13 C -0.17 -5.78 7.06 -9.90 -0.07 -5.85 16 14 H 0.13 3.84 8.14 -2.38 -0.02 3.82 16 15 C 0.15 6.44 7.05 86.52 0.61 7.05 16 16 C 0.11 3.77 5.97 44.99 0.27 4.04 16 17 H 0.11 4.26 7.40 -2.38 -0.02 4.24 16 18 N -0.67 -17.48 5.51 -445.55 -2.46 -19.94 16 19 C 0.56 16.22 7.77 86.74 0.67 16.89 16 20 O -0.57 -21.89 14.91 -3.94 -0.06 -21.95 16 21 C -0.17 -3.68 5.88 -20.05 -0.12 -3.80 16 22 C -0.04 -0.63 9.31 22.55 0.21 -0.42 16 23 C -0.06 -0.66 6.31 22.28 0.14 -0.52 16 24 Cl -0.05 -0.50 28.95 -2.72 -0.08 -0.58 16 25 C -0.04 -0.31 9.82 22.34 0.22 -0.09 16 26 C -0.14 -1.53 10.01 22.28 0.22 -1.31 16 27 C 0.14 2.85 7.28 22.67 0.17 3.01 16 28 F -0.13 -3.57 15.55 44.97 0.70 -2.87 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.11 6.09 5.34 -2.39 -0.01 6.08 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.42 7.67 6.86 -92.71 -0.64 7.03 16 35 H 0.16 1.70 6.41 -2.91 -0.02 1.69 16 36 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -73.10 334.11 2.65 -70.45 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.50 Total: 12.86 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 4.15 Total: 5.17 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.59 Total: -110.53 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.70 Total: -2.87 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -73.10 2.65 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960916769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds