Wall clock time and date at job start Tue Mar 31 2020 13:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47042 * 300.00040 * 3 2 1 6 6 H 1.48495 * 109.47303 * 60.00632 * 3 2 1 7 7 C 1.38817 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99550 * 189.09947 * 7 2 1 9 9 N 1.36937 * 119.99562 * 9.09310 * 7 2 1 10 10 C 1.48138 * 127.84103 * 15.58251 * 9 7 2 11 11 C 1.54388 * 104.62195 * 140.41017 * 10 9 7 12 12 H 1.08996 * 117.61458 * 242.76577 * 11 10 9 13 13 C 1.54284 * 104.95878 * 23.86170 * 11 10 9 14 14 H 1.09003 * 121.81775 * 222.18099 * 13 11 10 15 15 C 1.48144 * 127.83300 * 195.56918 * 9 7 2 16 16 C 1.52999 * 118.12369 * 87.18653 * 11 10 9 17 17 H 1.08994 * 117.44284 * 16.10880 * 16 11 10 18 18 N 1.46502 * 117.44038 * 160.81366 * 16 11 10 19 19 C 1.34776 * 119.99514 * 205.00227 * 18 16 11 20 20 O 1.21571 * 120.00402 * 359.97438 * 19 18 16 21 21 C 1.47730 * 119.99965 * 180.02562 * 19 18 16 22 22 C 1.39663 * 120.11108 * 359.72007 * 21 19 18 23 23 C 1.37829 * 119.90359 * 179.74370 * 22 21 19 24 24 C 1.38641 * 120.13535 * 0.51151 * 23 22 21 25 25 F 1.35099 * 119.88968 * 179.74075 * 24 23 22 26 26 C 1.38743 * 120.22754 * 359.76540 * 24 23 22 27 27 Cl 1.73592 * 119.95591 * 179.97438 * 26 24 23 28 28 C 1.37963 * 120.09191 * 359.97438 * 26 24 23 29 29 H 0.96997 * 119.99922 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.40975 * 21.62224 * 10 9 7 31 31 H 1.09008 * 110.40614 * 259.19252 * 10 9 7 32 32 H 1.08995 * 110.41410 * 338.37738 * 15 9 7 33 33 H 1.09003 * 110.40145 * 100.80844 * 15 9 7 34 34 H 0.96993 * 120.00170 * 24.99457 * 18 16 11 35 35 H 1.08000 * 120.05044 * 359.97438 * 22 21 19 36 36 H 1.08006 * 119.93711 * 180.25455 * 23 22 21 37 37 H 1.08005 * 120.06827 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0341 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1484 -3.6862 -2.6805 13 6 1.2861 -4.5967 -1.0932 14 1 2.0097 -5.0543 -1.7679 15 6 1.8197 -3.7545 0.0857 16 6 -0.1183 -5.1924 -0.9765 17 1 -0.5680 -5.2279 0.0157 18 7 -0.4525 -6.3116 -1.8608 19 6 -1.1031 -7.3858 -1.3715 20 8 -1.4122 -7.4263 -0.1965 21 6 -1.4397 -8.5147 -2.2630 22 6 -1.0900 -8.4687 -3.6144 23 6 -1.4014 -9.5266 -4.4411 24 6 -2.0702 -10.6312 -3.9362 25 9 -2.3776 -11.6631 -4.7522 26 6 -2.4253 -10.6802 -2.5959 27 17 -3.2632 -12.0663 -1.9713 28 6 -2.1135 -9.6288 -1.7588 29 1 -0.4850 0.8400 0.0004 30 1 -0.3432 -1.7011 -1.2926 31 1 -0.7317 -2.7501 0.1059 32 1 2.9091 -3.7786 0.1075 33 1 1.4117 -4.1190 1.0285 34 1 -0.2058 -6.2795 -2.7982 35 1 -0.5730 -7.6071 -4.0102 36 1 -1.1276 -9.4934 -5.4854 37 1 -2.3898 -9.6676 -0.7154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961608482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:01 Heat of formation + Delta-G solvation = 5.256813 kcal Electronic energy + Delta-G solvation = -23521.591186 eV Core-core repulsion = 19627.288648 eV Total energy + Delta-G solvation = -3894.302538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.51357 -40.55954 -39.11531 -38.09637 -36.96125 -34.67523 -32.91029 -31.58741 -31.23238 -30.04716 -27.21142 -25.86752 -24.39657 -23.64279 -21.96080 -20.76464 -20.37394 -19.37304 -18.62235 -17.75953 -17.25519 -16.87005 -16.31165 -16.14463 -15.77301 -15.00310 -14.79619 -14.58499 -14.48976 -13.98729 -13.67875 -13.42666 -13.35887 -13.29561 -12.80359 -12.29799 -12.03390 -11.96389 -11.61024 -11.56736 -11.46813 -11.03979 -10.88290 -10.46225 -10.28961 -10.21199 -10.09902 -9.78460 -9.62091 -9.28881 -9.27638 -8.78976 -8.44496 -6.91322 -5.83853 -3.18244 0.06478 0.46941 1.47525 2.30352 2.86693 3.22176 3.35414 3.41569 3.44016 3.44801 4.01428 4.21469 4.25717 4.36299 4.43642 4.53363 4.90724 5.06088 5.16864 5.28049 5.31523 5.32552 5.41407 5.50769 5.57358 5.76949 5.83647 5.99640 6.03008 6.14004 6.46009 6.64388 6.67740 6.83861 7.28775 7.37282 7.48571 7.67504 8.03682 8.15962 9.06820 9.69490 10.45861 11.30593 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038423 B = 0.002090 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.564611 B =13394.574628 C =13691.592277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.178 4.178 12 H 0.104 0.896 13 C -0.181 4.181 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.093 3.907 17 H 0.134 0.866 18 N -0.689 5.689 19 C 0.561 3.439 20 O -0.527 6.527 21 C -0.126 4.126 22 C -0.053 4.053 23 C -0.147 4.147 24 C 0.132 3.868 25 F -0.122 7.122 26 C -0.083 4.083 27 Cl -0.041 7.041 28 C -0.023 4.023 29 H 0.254 0.746 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.398 0.602 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -21.735 -10.512 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.199 4.199 12 H 0.122 0.878 13 C -0.202 4.202 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.152 0.848 18 N -0.337 5.337 19 C 0.347 3.653 20 O -0.404 6.404 21 C -0.130 4.130 22 C -0.072 4.072 23 C -0.166 4.166 24 C 0.111 3.889 25 F -0.100 7.100 26 C -0.111 4.111 27 Cl -0.012 7.012 28 C -0.043 4.043 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.233 0.767 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.447 -21.625 -9.593 24.072 hybrid contribution 0.419 0.474 -0.797 1.018 sum -4.027 -21.151 -10.390 23.907 Atomic orbital electron populations 1.69899 1.05065 1.25395 1.55728 1.24913 0.95660 0.98031 1.01689 0.86035 0.78869 0.83466 0.77299 1.20352 1.21617 1.21646 1.19038 0.90859 0.82241 1.43374 0.90431 1.45181 1.13312 0.99994 1.73122 1.21080 0.87015 0.92403 0.93699 1.24668 1.02187 0.92415 1.00639 0.87807 1.24384 0.90369 1.02299 1.03149 0.87847 1.21128 0.97303 0.85817 0.92942 1.21919 0.98825 0.84740 0.95718 0.84818 1.45268 1.57867 1.17777 1.12836 1.17915 0.78160 0.81852 0.87325 1.90822 1.53160 1.79947 1.16436 1.20012 1.02868 0.95963 0.94176 1.21324 0.95993 0.97971 0.91901 1.21086 1.01010 0.92462 1.02026 1.17654 0.98395 0.86231 0.86613 1.91569 1.90619 1.56241 1.71591 1.20880 1.04435 0.93151 0.92621 1.98409 1.75987 1.40019 1.86815 1.21105 0.92991 0.89324 1.00860 0.93537 0.88974 0.95535 0.92903 0.95369 0.76673 0.83715 0.82906 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.33 10.86 55.49 0.60 -25.72 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.54 29.56 -169.99 -5.03 16.51 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.19 10.35 -15.06 -0.16 -6.34 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -14.79 3.38 -168.86 -0.57 -15.36 16 10 C 0.18 4.28 5.70 -2.41 -0.01 4.26 16 11 C -0.18 -3.14 7.06 -89.22 -0.63 -3.77 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 13 C -0.18 -3.02 7.06 -89.22 -0.63 -3.65 16 14 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.15 3.16 7.04 -2.41 -0.02 3.15 16 16 C 0.09 1.47 5.98 -67.93 -0.41 1.06 16 17 H 0.13 2.42 7.40 -51.93 -0.38 2.03 16 18 N -0.69 -8.28 5.51 -54.79 -0.30 -8.58 16 19 C 0.56 7.23 7.77 -12.38 -0.10 7.14 16 20 O -0.53 -8.86 15.91 5.30 0.08 -8.77 16 21 C -0.13 -1.22 5.87 -104.97 -0.62 -1.84 16 22 C -0.05 -0.36 9.53 -39.20 -0.37 -0.73 16 23 C -0.15 -0.94 10.01 -39.58 -0.40 -1.33 16 24 C 0.13 1.09 7.28 -39.25 -0.29 0.81 16 25 F -0.12 -1.08 16.83 2.25 0.04 -1.05 16 26 C -0.08 -0.76 6.32 -39.50 -0.25 -1.01 16 27 Cl -0.04 -0.37 28.60 -51.86 -1.48 -1.86 16 28 C -0.02 -0.23 9.37 -39.16 -0.37 -0.59 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 31 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 3.45 6.85 -40.82 -0.28 3.17 16 35 H 0.15 0.61 6.40 -52.49 -0.34 0.27 16 36 H 0.15 0.59 8.06 -52.48 -0.42 0.16 16 37 H 0.16 1.58 7.65 -52.48 -0.40 1.17 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -31.47 336.45 -9.74 -41.21 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.82 Total: 1.65 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.33 Total: -3.10 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.27 Total: -49.67 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.47 -9.74 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961608482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.469 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds