Wall clock time and date at job start Tue Mar 31 2020 13:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47042 * 300.00040 * 3 2 1 6 6 H 1.48495 * 109.47303 * 60.00632 * 3 2 1 7 7 C 1.38817 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99550 * 189.09947 * 7 2 1 9 9 N 1.36937 * 119.99562 * 9.09310 * 7 2 1 10 10 C 1.48138 * 127.84103 * 15.58251 * 9 7 2 11 11 C 1.54388 * 104.62195 * 140.41017 * 10 9 7 12 12 H 1.08996 * 117.61458 * 242.76577 * 11 10 9 13 13 C 1.54284 * 104.95878 * 23.86170 * 11 10 9 14 14 H 1.09003 * 121.81775 * 222.18099 * 13 11 10 15 15 C 1.48144 * 127.83300 * 195.56918 * 9 7 2 16 16 C 1.52999 * 118.12369 * 87.18653 * 11 10 9 17 17 H 1.08994 * 117.44284 * 16.10880 * 16 11 10 18 18 N 1.46502 * 117.44038 * 160.81366 * 16 11 10 19 19 C 1.34776 * 119.99514 * 205.00227 * 18 16 11 20 20 O 1.21571 * 120.00402 * 359.97438 * 19 18 16 21 21 C 1.47730 * 119.99965 * 180.02562 * 19 18 16 22 22 C 1.39663 * 120.11108 * 359.72007 * 21 19 18 23 23 C 1.37829 * 119.90359 * 179.74370 * 22 21 19 24 24 C 1.38641 * 120.13535 * 0.51151 * 23 22 21 25 25 F 1.35099 * 119.88968 * 179.74075 * 24 23 22 26 26 C 1.38743 * 120.22754 * 359.76540 * 24 23 22 27 27 Cl 1.73592 * 119.95591 * 179.97438 * 26 24 23 28 28 C 1.37963 * 120.09191 * 359.97438 * 26 24 23 29 29 H 0.96997 * 119.99922 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.40975 * 21.62224 * 10 9 7 31 31 H 1.09008 * 110.40614 * 259.19252 * 10 9 7 32 32 H 1.08995 * 110.41410 * 338.37738 * 15 9 7 33 33 H 1.09003 * 110.40145 * 100.80844 * 15 9 7 34 34 H 0.96993 * 120.00170 * 24.99457 * 18 16 11 35 35 H 1.08000 * 120.05044 * 359.97438 * 22 21 19 36 36 H 1.08006 * 119.93711 * 180.25455 * 23 22 21 37 37 H 1.08005 * 120.06827 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0341 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1484 -3.6862 -2.6805 13 6 1.2861 -4.5967 -1.0932 14 1 2.0097 -5.0543 -1.7679 15 6 1.8197 -3.7545 0.0857 16 6 -0.1183 -5.1924 -0.9765 17 1 -0.5680 -5.2279 0.0157 18 7 -0.4525 -6.3116 -1.8608 19 6 -1.1031 -7.3858 -1.3715 20 8 -1.4122 -7.4263 -0.1965 21 6 -1.4397 -8.5147 -2.2630 22 6 -1.0900 -8.4687 -3.6144 23 6 -1.4014 -9.5266 -4.4411 24 6 -2.0702 -10.6312 -3.9362 25 9 -2.3776 -11.6631 -4.7522 26 6 -2.4253 -10.6802 -2.5959 27 17 -3.2632 -12.0663 -1.9713 28 6 -2.1135 -9.6288 -1.7588 29 1 -0.4850 0.8400 0.0004 30 1 -0.3432 -1.7011 -1.2926 31 1 -0.7317 -2.7501 0.1059 32 1 2.9091 -3.7786 0.1075 33 1 1.4117 -4.1190 1.0285 34 1 -0.2058 -6.2795 -2.7982 35 1 -0.5730 -7.6071 -4.0102 36 1 -1.1276 -9.4934 -5.4854 37 1 -2.3898 -9.6676 -0.7154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961608482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:01 Heat of formation + Delta-G solvation = -13.687919 kcal Electronic energy + Delta-G solvation = -23522.412692 eV Core-core repulsion = 19627.288648 eV Total energy + Delta-G solvation = -3895.124043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.16367 -41.53503 -40.31202 -39.18585 -37.64988 -36.15971 -34.48901 -32.52261 -32.21829 -31.34258 -28.91299 -27.66334 -25.38379 -24.27556 -23.39633 -21.99158 -21.71965 -20.88175 -19.41325 -18.85028 -18.55430 -18.06834 -17.24647 -16.96296 -16.70335 -16.55902 -16.04098 -15.74249 -15.37676 -15.07208 -14.91272 -14.62503 -14.58197 -14.10872 -14.10041 -13.75451 -13.34313 -13.25299 -12.87739 -12.74725 -12.64441 -12.59638 -12.14872 -12.10706 -11.99863 -11.87855 -11.66825 -11.26646 -10.84958 -10.69099 -10.24598 -10.01045 -9.69806 -8.91452 -7.91356 -5.27921 -0.62692 -0.13572 0.80766 1.47084 1.48523 1.48590 1.59948 1.81812 2.41145 2.49290 2.82191 2.88272 3.27624 3.39738 3.46749 3.63037 3.80456 3.83767 3.89434 3.94028 4.14958 4.27047 4.40552 4.53481 4.62483 4.65644 4.76468 4.87198 4.91380 4.95817 5.01112 5.28997 5.37426 5.43871 5.45904 5.53694 5.66267 6.17700 6.41164 7.01337 7.07337 7.68120 8.46100 9.22724 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038423 B = 0.002090 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.564611 B =13394.574628 C =13691.592277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.186 3.814 11 C -0.175 4.175 12 H 0.133 0.867 13 C -0.162 4.162 14 H 0.141 0.859 15 C 0.146 3.854 16 C 0.114 3.886 17 H 0.106 0.894 18 N -0.672 5.672 19 C 0.563 3.437 20 O -0.574 6.574 21 C -0.138 4.138 22 C -0.035 4.035 23 C -0.132 4.132 24 C 0.128 3.872 25 F -0.125 7.125 26 C -0.093 4.093 27 Cl -0.048 7.048 28 C -0.032 4.032 29 H 0.250 0.750 30 H 0.060 0.940 31 H -0.006 1.006 32 H 0.064 0.936 33 H 0.017 0.983 34 H 0.420 0.580 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -22.814 -13.373 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.060 3.940 11 C -0.196 4.196 12 H 0.151 0.849 13 C -0.183 4.183 14 H 0.158 0.842 15 C 0.020 3.980 16 C 0.007 3.993 17 H 0.124 0.876 18 N -0.322 5.322 19 C 0.352 3.648 20 O -0.454 6.454 21 C -0.141 4.141 22 C -0.054 4.054 23 C -0.150 4.150 24 C 0.108 3.892 25 F -0.104 7.104 26 C -0.121 4.121 27 Cl -0.019 7.019 28 C -0.052 4.052 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.197 0.803 36 H 0.206 0.794 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.931 -22.749 -12.496 26.120 hybrid contribution -0.075 0.723 0.136 0.739 sum -3.006 -22.026 -12.360 25.435 Atomic orbital electron populations 1.70098 1.06568 1.25710 1.57244 1.25759 0.96493 1.01350 1.02118 0.84984 0.78334 0.79108 0.76701 1.18770 1.21594 1.22158 1.19427 0.91405 0.83441 1.42425 0.89903 1.45490 1.13795 1.01124 1.73698 1.20823 0.85987 0.93955 0.93235 1.24339 1.03635 0.90741 1.00853 0.84905 1.24283 0.90959 1.01501 1.01571 0.84160 1.21274 0.98082 0.84434 0.94163 1.21405 0.97884 0.84929 0.95060 0.87640 1.44977 1.57525 1.16318 1.13383 1.18372 0.77049 0.82349 0.87080 1.90810 1.54968 1.80884 1.18764 1.19740 1.04569 0.94749 0.95067 1.21643 0.94576 0.98963 0.90171 1.21449 0.99172 0.90936 1.03491 1.17903 0.98405 0.86753 0.86147 1.91566 1.90679 1.56603 1.71528 1.20901 1.05083 0.92930 0.93162 1.98404 1.76197 1.40291 1.87030 1.21011 0.93646 0.89937 1.00560 0.94106 0.92164 0.98780 0.91735 0.96490 0.74100 0.80295 0.79424 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.46 10.86 21.65 0.24 -56.23 16 2 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 3 Si 0.98 44.73 29.56 68.60 2.03 46.76 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.11 10.35 84.03 0.87 -12.24 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.62 -31.23 3.38 -688.16 -2.33 -33.55 16 10 C 0.19 8.91 5.70 86.54 0.49 9.40 16 11 C -0.17 -5.91 7.06 -9.89 -0.07 -5.98 16 12 H 0.13 3.75 8.14 -2.39 -0.02 3.74 16 13 C -0.16 -5.03 7.06 -9.89 -0.07 -5.10 16 14 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 15 C 0.15 5.90 7.04 86.54 0.61 6.51 16 16 C 0.11 3.43 5.98 44.99 0.27 3.69 16 17 H 0.11 3.89 7.40 -2.39 -0.02 3.87 16 18 N -0.67 -14.16 5.51 -445.52 -2.46 -16.61 16 19 C 0.56 13.65 7.77 86.75 0.67 14.33 16 20 O -0.57 -19.53 15.91 -3.94 -0.06 -19.59 16 21 C -0.14 -2.36 5.87 -20.09 -0.12 -2.47 16 22 C -0.04 -0.32 9.53 22.52 0.21 -0.10 16 23 C -0.13 -1.09 10.01 22.27 0.22 -0.86 16 24 C 0.13 1.79 7.28 22.49 0.16 1.95 16 25 F -0.13 -1.93 16.83 44.97 0.76 -1.17 16 26 C -0.09 -1.58 6.32 22.33 0.14 -1.44 16 27 Cl -0.05 -0.85 28.60 -2.72 -0.08 -0.93 16 28 C -0.03 -0.60 9.37 22.54 0.21 -0.38 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.06 3.25 6.51 -2.39 -0.02 3.23 16 31 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.42 5.21 6.85 -92.71 -0.64 4.58 16 35 H 0.18 0.37 6.40 -2.91 -0.02 0.35 16 36 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.15 3.03 7.65 -2.91 -0.02 3.01 16 Total: -1.00 -72.35 336.45 2.66 -69.69 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.50 Total: 7.44 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.07 Total: 4.20 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.55 Total: -106.39 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.06 Total: -19.59 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.76 Total: -1.17 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -72.35 2.66 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961608482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.002 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds