Wall clock time and date at job start Tue Mar 31 2020 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21571 * 119.99787 * 0.02562 * 19 18 16 21 21 C 1.47694 * 120.00066 * 180.02562 * 19 18 16 22 22 C 1.39671 * 120.16169 * 359.97438 * 21 19 18 23 23 C 1.37851 * 119.90304 * 180.02562 * 22 21 19 24 24 C 1.38460 * 120.22839 * 359.97438 * 23 22 21 25 25 C 1.38295 * 120.32746 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 119.95302 * 179.97438 * 25 24 23 27 27 C 1.38441 * 120.09040 * 359.67384 * 25 24 23 28 28 F 1.35109 * 120.11328 * 180.30053 * 27 25 24 29 29 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 31 31 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 32 32 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 33 33 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 34 34 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 35 35 H 1.07999 * 120.05083 * 0.02562 * 22 21 19 36 36 H 1.07995 * 119.88773 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.83433 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1990 -7.5039 -0.6955 21 6 -1.9674 -8.4840 1.2804 22 6 -2.1288 -8.3615 2.6623 23 6 -2.7161 -9.3823 3.3788 24 6 -3.1471 -10.5288 2.7331 25 6 -2.9920 -10.6601 1.3652 26 17 -3.5354 -12.1020 0.5657 27 6 -2.4097 -9.6406 0.6316 28 9 -2.2634 -9.7658 -0.7057 29 1 -0.4850 0.8400 0.0004 30 1 2.9073 -3.7538 0.3762 31 1 1.8506 -4.1842 -1.0040 32 1 -0.5204 -2.8478 -1.0095 33 1 -0.7143 -1.7149 0.3636 34 1 -1.0300 -6.1901 2.0947 35 1 -1.7940 -7.4684 3.1688 36 1 -2.8404 -9.2875 4.4473 37 1 -3.6060 -11.3249 3.3008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961653059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:14 Heat of formation + Delta-G solvation = 12.871673 kcal Electronic energy + Delta-G solvation = -23873.843256 eV Core-core repulsion = 19979.870923 eV Total energy + Delta-G solvation = -3893.972333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18047 -40.37139 -39.07548 -38.06517 -36.93516 -34.52183 -32.90704 -31.58779 -30.94933 -30.05155 -27.08715 -25.90101 -24.62945 -23.25299 -21.91808 -20.73918 -20.36420 -19.23752 -18.51446 -17.45104 -17.16974 -16.88826 -16.17013 -15.99115 -15.91231 -15.13049 -14.76505 -14.66127 -14.28561 -13.68689 -13.60156 -13.40541 -13.28292 -12.82703 -12.75049 -12.27795 -12.07487 -12.00945 -11.53092 -11.50403 -11.36899 -11.13349 -10.88225 -10.37989 -10.22502 -10.07244 -10.03213 -9.70349 -9.57084 -9.23919 -9.21392 -8.84322 -8.41591 -6.95008 -5.69055 -3.13030 0.13771 0.45419 1.49276 2.41608 2.88511 3.21707 3.37902 3.43227 3.45756 3.57584 4.11689 4.20163 4.29770 4.37525 4.44726 4.55769 4.87243 5.12098 5.25736 5.30525 5.33101 5.37897 5.45222 5.54765 5.61750 5.77064 5.86715 6.03921 6.08381 6.21125 6.50489 6.64806 6.74010 6.85556 7.29137 7.40906 7.52536 7.76367 8.09143 8.24492 9.09768 9.73955 10.44774 11.34516 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038487 B = 0.002238 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.341572 B =12505.669751 C =12801.785080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.160 3.840 11 C -0.183 4.183 12 H 0.103 0.897 13 C -0.169 4.169 14 H 0.102 0.898 15 C 0.155 3.845 16 C 0.091 3.909 17 H 0.133 0.867 18 N -0.688 5.688 19 C 0.558 3.442 20 O -0.518 6.518 21 C -0.156 4.156 22 C -0.054 4.054 23 C -0.125 4.125 24 C -0.059 4.059 25 C -0.088 4.088 26 Cl -0.043 7.043 27 C 0.170 3.830 28 F -0.100 7.100 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.137 0.863 34 H 0.398 0.602 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 -22.176 9.784 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.205 4.205 12 H 0.121 0.879 13 C -0.190 4.190 14 H 0.120 0.880 15 C 0.031 3.969 16 C -0.015 4.015 17 H 0.150 0.850 18 N -0.337 5.337 19 C 0.344 3.656 20 O -0.394 6.394 21 C -0.161 4.161 22 C -0.072 4.072 23 C -0.144 4.144 24 C -0.078 4.078 25 C -0.115 4.115 26 Cl -0.014 7.014 27 C 0.148 3.852 28 F -0.077 7.077 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.155 0.845 34 H 0.233 0.767 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.916 -22.083 8.750 25.038 hybrid contribution 0.334 0.560 0.389 0.759 sum -7.582 -21.523 9.139 24.582 Atomic orbital electron populations 1.69483 1.04970 1.24687 1.58035 1.24763 0.95713 0.97733 1.02772 0.85937 0.78584 0.83357 0.77255 1.20531 1.21714 1.21769 1.19165 0.90433 0.82126 1.42439 0.90157 1.46140 1.01312 0.99401 1.85648 1.21088 0.94815 0.85795 0.95023 1.24405 0.91144 1.02571 1.02390 0.87911 1.24652 0.99730 0.91639 1.02996 0.87965 1.22568 0.85450 0.95144 0.93757 1.21991 0.97790 0.85311 0.96371 0.84960 1.45250 1.60600 1.16753 1.11101 1.17796 0.78817 0.81786 0.87219 1.90870 1.55201 1.79601 1.13716 1.20108 1.05806 0.95313 0.94846 1.21391 0.95006 0.99241 0.91602 1.21145 0.99334 0.92771 1.01121 1.21193 0.96810 0.98633 0.91182 1.20945 1.06107 0.90540 0.93952 1.98405 1.88235 1.34950 1.79808 1.17387 0.96637 0.92666 0.78486 1.91659 1.92429 1.95533 1.28113 0.93601 0.92957 0.95452 0.96324 0.84547 0.76710 0.83834 0.83504 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.12 55.49 0.56 -25.80 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.21 -5.87 10.42 -15.05 -0.16 -6.03 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.25 3.46 -165.72 -0.57 -15.82 16 10 C 0.16 3.34 7.05 -2.41 -0.02 3.32 16 11 C -0.18 -3.23 7.06 -89.22 -0.63 -3.86 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 13 C -0.17 -3.15 6.96 -89.23 -0.62 -3.77 16 14 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 15 C 0.16 3.69 6.43 -0.31 0.00 3.68 16 16 C 0.09 1.52 5.97 -67.93 -0.41 1.11 16 17 H 0.13 2.52 7.40 -51.93 -0.38 2.13 16 18 N -0.69 -9.07 5.51 -54.80 -0.30 -9.37 16 19 C 0.56 8.14 7.77 -12.40 -0.10 8.04 16 20 O -0.52 -9.78 14.91 5.30 0.08 -9.70 16 21 C -0.16 -1.75 5.88 -104.92 -0.62 -2.37 16 22 C -0.05 -0.38 9.54 -39.19 -0.37 -0.76 16 23 C -0.13 -0.66 10.03 -39.64 -0.40 -1.06 16 24 C -0.06 -0.37 9.82 -39.48 -0.39 -0.75 16 25 C -0.09 -0.81 6.32 -39.49 -0.25 -1.06 16 26 Cl -0.04 -0.39 28.61 -51.86 -1.48 -1.87 16 27 C 0.17 2.02 7.26 -38.93 -0.28 1.74 16 28 F -0.10 -1.47 15.12 2.25 0.03 -1.44 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.14 3.62 5.34 -51.93 -0.28 3.34 16 34 H 0.40 3.85 6.86 -40.82 -0.28 3.57 16 35 H 0.14 0.67 6.40 -52.49 -0.34 0.34 16 36 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 37 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -32.73 333.56 -9.80 -42.53 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -3.78 Total: 1.94 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -4.33 Total: -2.25 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.31 Total: -50.99 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.73 -9.80 -42.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961653059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.402 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds