Wall clock time and date at job start Tue Mar 31 2020 13:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21562 * 120.00092 * 0.02562 * 19 18 16 21 21 C 1.47775 * 119.99644 * 180.02562 * 19 18 16 22 22 C 1.39601 * 120.14753 * 0.02562 * 21 19 18 23 23 C 1.38121 * 119.84328 * 179.97438 * 22 21 19 24 24 F 1.35099 * 119.94135 * 180.02562 * 23 22 21 25 25 C 1.38627 * 120.12643 * 359.97438 * 23 22 21 26 26 C 1.38240 * 120.29489 * 359.97438 * 25 23 22 27 27 C 1.38158 * 120.15495 * 359.76544 * 26 25 23 28 28 Cl 1.73603 * 120.06398 * 180.25221 * 27 26 25 29 29 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 31 31 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 32 32 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 33 33 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 34 34 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 35 35 H 1.08005 * 120.07902 * 359.97438 * 22 21 19 36 36 H 1.08005 * 119.85164 * 180.02562 * 25 23 22 37 37 H 1.07995 * 119.92412 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1993 -7.5034 0.6948 21 6 -1.9687 -8.4843 -1.2811 22 6 -2.1303 -8.3617 -2.6623 23 6 -2.7190 -9.3851 -3.3790 24 9 -2.8760 -9.2688 -4.7158 25 6 -3.1482 -10.5321 -2.7294 26 6 -2.9898 -10.6598 -1.3620 27 6 -2.3977 -9.6457 -0.6342 28 17 -2.1941 -9.8113 1.0818 29 1 -0.4850 0.8400 0.0004 30 1 -0.7146 -1.7148 -0.3630 31 1 -0.5197 -2.8483 1.0094 32 1 1.8513 -4.1847 1.0018 33 1 2.9071 -3.7537 -0.3789 34 1 -1.0321 -6.1894 -2.0953 35 1 -1.7959 -7.4685 -3.1692 36 1 -3.6075 -11.3299 -3.2942 37 1 -3.3267 -11.5558 -0.8620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961854999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:46 Heat of formation + Delta-G solvation = 19.010536 kcal Electronic energy + Delta-G solvation = -23869.641202 eV Core-core repulsion = 19975.935070 eV Total energy + Delta-G solvation = -3893.706132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.39688 -40.47696 -38.99508 -37.91250 -36.61097 -34.50190 -32.95096 -31.73104 -30.67982 -30.06103 -27.07210 -25.89758 -24.66161 -23.26824 -21.85469 -20.72463 -20.36039 -19.22115 -18.52770 -17.31032 -17.02067 -16.92266 -16.31714 -16.14692 -15.99167 -14.97797 -14.87335 -14.68969 -14.15602 -13.95585 -13.57577 -13.37729 -13.22741 -12.91668 -12.73688 -12.24695 -12.05912 -11.57254 -11.52238 -11.47621 -11.24731 -11.09951 -10.84176 -10.36771 -10.23363 -10.06222 -9.77480 -9.71699 -9.65785 -9.21792 -9.04982 -8.82320 -8.38590 -6.93890 -5.67570 -3.11705 0.14065 0.46540 1.82748 2.42262 2.90117 3.23718 3.39648 3.43650 3.44973 3.61344 4.03458 4.15244 4.31996 4.45687 4.49749 4.61228 4.95038 5.07365 5.15196 5.30480 5.33938 5.39750 5.43363 5.50690 5.56921 5.78740 5.88660 6.07917 6.10184 6.23092 6.52216 6.65936 6.76142 6.87005 7.30367 7.43877 7.52816 7.77828 8.11721 8.25986 9.11004 9.75219 10.46181 11.35799 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002580 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.579780 B =10849.999834 C =11666.405467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.170 4.170 12 H 0.102 0.898 13 C -0.184 4.184 14 H 0.102 0.898 15 C 0.160 3.840 16 C 0.093 3.907 17 H 0.133 0.867 18 N -0.690 5.690 19 C 0.553 3.447 20 O -0.506 6.506 21 C -0.094 4.094 22 C -0.112 4.112 23 C 0.098 3.902 24 F -0.131 7.131 25 C -0.120 4.120 26 C -0.091 4.091 27 C 0.000 4.000 28 Cl -0.019 7.019 29 H 0.254 0.746 30 H 0.137 0.863 31 H 0.019 0.981 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.397 0.603 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 -22.689 -6.726 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.191 4.191 12 H 0.120 0.880 13 C -0.206 4.206 14 H 0.120 0.880 15 C 0.034 3.966 16 C -0.013 4.013 17 H 0.151 0.849 18 N -0.339 5.339 19 C 0.339 3.661 20 O -0.382 6.382 21 C -0.098 4.098 22 C -0.131 4.131 23 C 0.078 3.922 24 F -0.109 7.109 25 C -0.139 4.139 26 C -0.110 4.110 27 C -0.028 4.028 28 Cl 0.011 6.989 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.699 -22.460 -5.716 24.422 hybrid contribution 0.370 0.749 -0.917 1.240 sum -7.329 -21.711 -6.633 23.855 Atomic orbital electron populations 1.69467 1.04963 1.24912 1.57859 1.24755 0.95704 0.97708 1.02715 0.86087 0.78344 0.82798 0.77880 1.21204 1.21535 1.21196 1.19070 0.90380 0.82174 1.42730 0.90279 1.46121 1.01317 0.99379 1.85671 1.22564 0.85421 0.95137 0.93703 1.24662 0.99756 0.91704 1.03018 0.88019 1.24397 0.91161 1.02627 1.02403 0.87971 1.21072 0.94789 0.85790 0.94992 1.21970 0.97673 0.85287 0.96338 0.84895 1.45317 1.60547 1.16888 1.11132 1.17869 0.79053 0.81813 0.87383 1.90894 1.54675 1.79257 1.13334 1.19699 1.02032 0.95243 0.92847 1.21297 0.99521 0.99421 0.92899 1.17529 1.01139 0.95627 0.77889 1.91557 1.93536 1.96231 1.29617 1.21300 1.00566 0.97371 0.94666 1.20951 0.98392 0.98681 0.92943 1.21093 0.99373 0.94442 0.87893 1.98446 1.95235 1.97216 1.08008 0.93504 0.84587 0.96344 0.95481 0.93010 0.76820 0.83395 0.83280 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.12 55.49 0.56 -25.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.95 10.42 -15.06 -0.16 -6.11 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.31 3.46 -165.73 -0.57 -15.89 16 10 C 0.16 3.72 6.43 -0.29 0.00 3.72 16 11 C -0.17 -3.20 6.96 -89.22 -0.62 -3.82 16 12 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 13 C -0.18 -3.28 7.06 -89.24 -0.63 -3.91 16 14 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.16 3.37 7.05 -2.43 -0.02 3.35 16 16 C 0.09 1.54 5.97 -67.93 -0.41 1.14 16 17 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 18 N -0.69 -9.16 5.51 -54.77 -0.30 -9.46 16 19 C 0.55 7.73 7.76 -12.36 -0.10 7.64 16 20 O -0.51 -8.68 13.53 5.31 0.07 -8.61 16 21 C -0.09 -1.03 5.88 -104.95 -0.62 -1.65 16 22 C -0.11 -0.97 9.52 -39.12 -0.37 -1.35 16 23 C 0.10 0.79 7.29 -39.48 -0.29 0.50 16 24 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 25 C -0.12 -0.77 10.02 -39.44 -0.39 -1.16 16 26 C -0.09 -0.65 9.82 -39.61 -0.39 -1.04 16 27 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 28 Cl -0.02 -0.22 26.02 -51.86 -1.35 -1.57 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.14 3.63 5.34 -51.93 -0.28 3.35 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.14 6.86 -40.82 -0.28 3.86 16 35 H 0.15 1.03 6.41 -52.48 -0.34 0.70 16 36 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -31.39 331.76 -9.69 -41.08 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.78 Total: 3.04 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.33 Total: -3.42 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.31 Total: -51.25 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.35 Total: -1.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.39 -9.69 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961854999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.087 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds