Wall clock time and date at job start Tue Mar 31 2020 13:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21562 * 120.00092 * 0.02562 * 19 18 16 21 21 C 1.47775 * 119.99644 * 180.02562 * 19 18 16 22 22 C 1.39601 * 120.14753 * 0.02562 * 21 19 18 23 23 C 1.38121 * 119.84328 * 179.97438 * 22 21 19 24 24 F 1.35099 * 119.94135 * 180.02562 * 23 22 21 25 25 C 1.38627 * 120.12643 * 359.97438 * 23 22 21 26 26 C 1.38240 * 120.29489 * 359.97438 * 25 23 22 27 27 C 1.38158 * 120.15495 * 359.76544 * 26 25 23 28 28 Cl 1.73603 * 120.06398 * 180.25221 * 27 26 25 29 29 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 31 31 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 32 32 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 33 33 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 34 34 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 35 35 H 1.08005 * 120.07902 * 359.97438 * 22 21 19 36 36 H 1.08005 * 119.85164 * 180.02562 * 25 23 22 37 37 H 1.07995 * 119.92412 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1993 -7.5034 0.6948 21 6 -1.9687 -8.4843 -1.2811 22 6 -2.1303 -8.3617 -2.6623 23 6 -2.7190 -9.3851 -3.3790 24 9 -2.8760 -9.2688 -4.7158 25 6 -3.1482 -10.5321 -2.7294 26 6 -2.9898 -10.6598 -1.3620 27 6 -2.3977 -9.6457 -0.6342 28 17 -2.1941 -9.8113 1.0818 29 1 -0.4850 0.8400 0.0004 30 1 -0.7146 -1.7148 -0.3630 31 1 -0.5197 -2.8483 1.0094 32 1 1.8513 -4.1847 1.0018 33 1 2.9071 -3.7537 -0.3789 34 1 -1.0321 -6.1894 -2.0953 35 1 -1.7959 -7.4685 -3.1692 36 1 -3.6075 -11.3299 -3.2942 37 1 -3.3267 -11.5558 -0.8620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961854999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:46 Heat of formation + Delta-G solvation = 0.452932 kcal Electronic energy + Delta-G solvation = -23870.445920 eV Core-core repulsion = 19975.935070 eV Total energy + Delta-G solvation = -3894.510850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.02404 -41.49049 -40.21461 -39.07268 -37.40897 -36.03577 -34.49310 -32.81479 -31.67241 -31.34192 -28.82798 -27.69188 -25.62831 -24.07523 -23.24083 -21.98787 -21.77043 -20.80768 -19.44860 -18.89178 -18.13974 -17.68537 -17.34770 -17.01098 -16.79828 -16.65621 -16.02368 -15.76185 -15.47929 -15.08309 -14.76513 -14.57512 -14.54222 -14.13727 -13.77878 -13.60294 -13.24075 -13.08127 -13.00989 -12.69388 -12.67713 -12.32840 -12.28751 -12.12451 -12.00255 -11.72444 -11.65229 -10.97812 -10.75875 -10.65877 -10.42605 -9.82263 -9.65735 -8.96425 -7.75579 -5.22990 -0.57555 -0.15899 1.06946 1.48549 1.51643 1.56696 1.58074 1.80162 2.38880 2.50093 2.87994 2.94595 3.32023 3.38739 3.48439 3.55334 3.83349 3.85087 3.90389 4.00261 4.13912 4.25367 4.36878 4.50050 4.55023 4.71213 4.77574 4.85784 4.89081 4.96064 4.98926 5.27341 5.37270 5.45730 5.48521 5.51274 5.77845 6.26238 6.38311 7.02576 7.06031 7.69681 8.44411 9.25707 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002580 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.579780 B =10849.999834 C =11666.405467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.154 3.846 11 C -0.173 4.173 12 H 0.121 0.879 13 C -0.170 4.170 14 H 0.132 0.868 15 C 0.153 3.847 16 C 0.119 3.881 17 H 0.111 0.889 18 N -0.678 5.678 19 C 0.552 3.448 20 O -0.544 6.544 21 C -0.113 4.113 22 C -0.107 4.107 23 C 0.093 3.907 24 F -0.133 7.133 25 C -0.099 4.099 26 C -0.082 4.082 27 C -0.013 4.013 28 Cl -0.043 7.043 29 H 0.249 0.751 30 H 0.109 0.891 31 H -0.003 1.003 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.163 0.837 36 H 0.184 0.816 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -24.764 -8.932 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.030 3.970 11 C -0.194 4.194 12 H 0.139 0.861 13 C -0.191 4.191 14 H 0.150 0.850 15 C 0.028 3.972 16 C 0.012 3.988 17 H 0.129 0.871 18 N -0.329 5.329 19 C 0.340 3.660 20 O -0.422 6.422 21 C -0.117 4.117 22 C -0.126 4.126 23 C 0.073 3.927 24 F -0.111 7.111 25 C -0.118 4.118 26 C -0.101 4.101 27 C -0.041 4.041 28 Cl -0.013 7.013 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.015 0.985 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.181 0.819 36 H 0.201 0.799 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.887 -24.578 -7.959 27.011 hybrid contribution 0.389 1.284 -0.239 1.362 sum -7.498 -23.294 -8.198 25.808 Atomic orbital electron populations 1.69733 1.06210 1.25111 1.58817 1.25600 0.96618 1.00880 1.03009 0.85065 0.77045 0.78562 0.78111 1.20175 1.21931 1.20704 1.19458 0.90970 0.83409 1.42285 0.89811 1.46417 1.02128 1.00466 1.85962 1.22300 0.84821 0.96261 0.93660 1.24328 1.01390 0.91012 1.02687 0.86145 1.24312 0.90187 1.02034 1.02558 0.85037 1.21196 0.95973 0.84374 0.95688 1.21455 0.96766 0.85025 0.95578 0.87116 1.45098 1.60155 1.15885 1.11765 1.18351 0.78269 0.82197 0.87171 1.90880 1.56166 1.80030 1.15132 1.19415 1.04062 0.94714 0.93528 1.21382 0.99048 1.00311 0.91891 1.17645 1.01224 0.96001 0.77811 1.91561 1.93547 1.96274 1.29751 1.21684 0.98500 0.97334 0.94300 1.21246 0.97105 0.98591 0.93139 1.21344 1.00509 0.95343 0.86932 1.98437 1.95470 1.97277 1.10154 0.94120 0.87400 0.98468 0.95944 0.92017 0.74801 0.81931 0.79874 0.80432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.01 10.12 21.65 0.22 -55.79 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.23 -13.04 10.42 84.03 0.88 -12.16 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -32.47 3.46 -678.24 -2.35 -34.82 16 10 C 0.15 7.60 6.43 85.80 0.55 8.16 16 11 C -0.17 -6.46 6.96 -9.89 -0.07 -6.53 16 12 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 13 C -0.17 -5.81 7.06 -9.90 -0.07 -5.88 16 14 H 0.13 3.78 8.14 -2.38 -0.02 3.76 16 15 C 0.15 6.43 7.05 86.52 0.61 7.04 16 16 C 0.12 3.88 5.97 44.99 0.27 4.15 16 17 H 0.11 4.23 7.40 -2.38 -0.02 4.21 16 18 N -0.68 -17.03 5.51 -445.47 -2.46 -19.48 16 19 C 0.55 15.03 7.76 86.77 0.67 15.70 16 20 O -0.54 -18.89 13.53 -3.91 -0.05 -18.94 16 21 C -0.11 -2.30 5.88 -20.08 -0.12 -2.42 16 22 C -0.11 -1.58 9.52 22.57 0.21 -1.36 16 23 C 0.09 1.17 7.29 22.33 0.16 1.33 16 24 F -0.13 -1.85 17.26 44.97 0.78 -1.08 16 25 C -0.10 -0.86 10.02 22.36 0.22 -0.64 16 26 C -0.08 -0.90 9.82 22.25 0.22 -0.68 16 27 C -0.01 -0.25 6.35 22.60 0.14 -0.10 16 28 Cl -0.04 -1.01 26.02 -2.72 -0.07 -1.08 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.11 6.01 5.34 -2.39 -0.01 6.00 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.41 7.57 6.86 -92.71 -0.64 6.94 16 35 H 0.16 1.78 6.41 -2.91 -0.02 1.76 16 36 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 37 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -70.47 331.76 2.75 -67.73 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.50 Total: 12.81 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.15 Total: 3.19 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.59 Total: -110.09 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -70.47 2.75 -67.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961854999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.180 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds