Wall clock time and date at job start Tue Mar 31 2020 13:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00157 * 2 1 4 4 H 1.48506 * 109.46982 * 265.38761 * 3 2 1 5 5 H 1.48505 * 109.46860 * 25.38342 * 3 2 1 6 6 H 1.48490 * 109.47227 * 145.38541 * 3 2 1 7 7 C 1.38814 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00267 * 343.43002 * 7 2 1 9 9 N 1.36942 * 120.00016 * 163.44100 * 7 2 1 10 10 C 1.48138 * 127.83791 * 160.87651 * 9 7 2 11 11 C 1.54395 * 104.61771 * 140.41132 * 10 9 7 12 12 H 1.08997 * 117.61236 * 242.76703 * 11 10 9 13 13 C 1.54278 * 104.95962 * 23.86441 * 11 10 9 14 14 H 1.09004 * 121.81938 * 222.18103 * 13 11 10 15 15 C 1.48150 * 127.83473 * 340.86956 * 9 7 2 16 16 C 1.53000 * 118.12094 * 87.19021 * 11 10 9 17 17 H 1.08990 * 117.44371 * 16.10838 * 16 11 10 18 18 N 1.46494 * 117.43871 * 160.81095 * 16 11 10 19 19 C 1.34776 * 119.99995 * 204.99575 * 18 16 11 20 20 O 1.21557 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.47789 * 120.00499 * 179.97438 * 19 18 16 22 22 C 1.39626 * 120.11808 * 359.72634 * 21 19 18 23 23 C 1.37899 * 119.91870 * 179.76531 * 22 21 19 24 24 C 1.38484 * 120.15477 * 0.48906 * 23 22 21 25 25 Cl 1.73601 * 119.87749 * 179.76481 * 24 23 22 26 26 C 1.38698 * 120.24466 * 359.78501 * 24 23 22 27 27 F 1.35099 * 119.95700 * 179.97438 * 26 24 23 28 28 C 1.38134 * 120.07999 * 359.95862 * 26 24 23 29 29 H 0.96993 * 120.00418 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.40853 * 21.62544 * 10 9 7 31 31 H 1.09004 * 110.40842 * 259.19541 * 10 9 7 32 32 H 1.09002 * 110.40558 * 338.37512 * 15 9 7 33 33 H 1.08998 * 110.40336 * 100.80863 * 15 9 7 34 34 H 0.97000 * 120.00941 * 24.99637 * 18 16 11 35 35 H 1.08000 * 120.04345 * 359.97438 * 22 21 19 36 36 H 1.07996 * 119.92246 * 180.27499 * 23 22 21 37 37 H 1.07997 * 120.07670 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3956 5 1 1.4022 2.6789 0.6002 6 1 3.4955 1.4703 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5039 -2.1182 0.2658 9 7 3.3371 -1.2266 -0.3385 10 6 4.3320 -2.2824 -0.0384 11 6 5.1891 -2.3853 -1.3185 12 1 5.1760 -3.3308 -1.8606 13 6 5.0381 -1.0145 -2.0101 14 1 4.9008 -0.9266 -3.0879 15 6 4.1030 -0.2033 -1.0875 16 6 6.3949 -1.4536 -1.4557 17 1 6.7527 -0.9587 -0.5530 18 7 7.4302 -1.8273 -2.4224 19 6 8.6937 -1.3870 -2.2607 20 8 8.9743 -0.6801 -1.3125 21 6 9.7384 -1.7645 -3.2356 22 6 9.4203 -2.5819 -4.3220 23 6 10.3972 -2.9276 -5.2318 24 6 11.6951 -2.4743 -5.0649 25 17 12.9206 -2.9189 -6.2113 26 6 12.0196 -1.6667 -3.9850 27 9 13.2877 -1.2281 -3.8275 28 6 11.0477 -1.3099 -3.0705 29 1 -0.4850 0.8399 -0.0004 30 1 3.8319 -3.2301 0.1614 31 1 4.9504 -1.9915 0.8108 32 1 3.4302 0.4176 -1.6791 33 1 4.6857 0.4122 -0.4021 34 1 7.2065 -2.3917 -3.1790 35 1 8.4098 -2.9402 -4.4515 36 1 10.1504 -3.5561 -6.0746 37 1 11.3003 -0.6808 -2.2299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961857825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:04 Heat of formation + Delta-G solvation = 12.352934 kcal Electronic energy + Delta-G solvation = -23638.425948 eV Core-core repulsion = 19744.431121 eV Total energy + Delta-G solvation = -3893.994827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.46989 -40.69214 -39.35636 -38.36183 -37.05085 -34.90046 -32.97516 -31.72650 -31.34948 -30.47429 -27.88481 -26.04948 -24.60866 -23.50349 -21.98076 -20.93213 -20.76815 -19.75364 -18.76597 -17.44684 -17.12306 -17.00939 -16.65410 -16.31960 -16.26150 -15.25817 -15.07725 -14.71020 -14.55192 -13.99258 -13.78788 -13.63186 -13.53075 -13.04878 -12.98746 -12.55106 -12.36303 -12.35208 -12.07337 -11.78324 -11.52004 -11.28007 -11.11076 -10.84947 -10.37506 -10.23178 -10.10908 -9.68300 -9.65579 -9.40165 -9.36535 -8.86855 -8.71890 -7.18387 -5.98027 -3.32982 -0.05967 0.43900 1.36547 2.20248 2.64010 3.10443 3.29350 3.45721 3.46070 3.46928 3.97066 3.98483 4.11829 4.27586 4.47513 4.49017 4.72840 4.85022 5.00305 5.02166 5.13927 5.23767 5.26516 5.31701 5.45922 5.48674 5.61356 5.66890 5.86532 5.95886 6.15207 6.40139 6.43868 6.47922 6.57314 6.69762 7.19805 7.52973 7.87659 8.26512 8.72076 9.60485 10.13393 11.17999 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.002252 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.939100 B =12429.053666 C =12722.039911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.174 4.174 12 H 0.112 0.888 13 C -0.173 4.173 14 H 0.111 0.889 15 C 0.129 3.871 16 C 0.096 3.904 17 H 0.136 0.864 18 N -0.689 5.689 19 C 0.560 3.440 20 O -0.524 6.524 21 C -0.095 4.095 22 C -0.085 4.085 23 C -0.087 4.087 24 C -0.055 4.055 25 Cl -0.042 7.042 26 C 0.105 3.895 27 F -0.121 7.121 28 C -0.084 4.084 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.400 0.600 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.357 -7.528 -13.017 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.195 4.195 12 H 0.130 0.870 13 C -0.194 4.194 14 H 0.129 0.871 15 C 0.003 3.997 16 C -0.009 4.009 17 H 0.154 0.846 18 N -0.338 5.338 19 C 0.347 3.653 20 O -0.401 6.401 21 C -0.098 4.098 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.083 4.083 25 Cl -0.013 7.013 26 C 0.085 3.915 27 F -0.100 7.100 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.236 0.764 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 24.386 -6.946 -12.346 28.202 hybrid contribution 0.620 0.651 -0.706 1.143 sum 25.006 -6.295 -13.052 28.901 Atomic orbital electron populations 1.69763 1.05433 1.26664 1.53815 1.25017 0.95295 0.97542 1.00053 0.86919 0.79372 0.84349 0.77537 1.21357 1.22965 1.19516 1.18655 0.80923 0.95101 1.41724 0.88661 1.45539 1.06155 1.19252 1.61878 1.21142 0.89993 0.93810 0.91968 1.24336 0.98487 0.94516 1.02177 0.87032 1.24384 0.96310 0.98887 0.99865 0.87131 1.21688 0.92767 0.92363 0.92881 1.21901 0.82302 1.02430 0.94300 0.84639 1.45236 1.07941 1.51964 1.28611 1.17961 0.82068 0.80291 0.85011 1.90826 1.81229 1.36750 1.31250 1.19896 0.93824 0.99664 0.96460 1.21384 1.00109 0.96135 0.92770 1.20943 0.89692 0.99704 1.00246 1.21278 0.92321 1.01368 0.93342 1.98414 1.53510 1.91289 1.58110 1.17221 0.80528 0.98228 0.95522 1.91579 1.35697 1.87505 1.95180 1.21246 0.90785 0.99356 0.98946 0.92580 0.91800 0.94790 0.90903 0.94388 0.76411 0.83733 0.83038 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 2 C 0.02 0.56 5.49 -17.43 -0.10 0.46 16 3 Si 0.89 22.38 24.49 -169.99 -4.16 18.22 16 4 H -0.29 -6.93 6.35 56.52 0.36 -6.57 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.69 6.33 56.52 0.36 -6.33 16 7 C -0.24 -6.59 10.78 -15.06 -0.16 -6.75 16 8 H 0.10 2.79 8.06 -52.48 -0.42 2.37 16 9 N -0.60 -14.18 3.19 -168.85 -0.54 -14.72 16 10 C 0.16 2.93 7.04 -2.41 -0.02 2.92 16 11 C -0.17 -2.59 7.06 -89.22 -0.63 -3.22 16 12 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.17 -2.80 7.06 -89.22 -0.63 -3.43 16 14 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 15 C 0.13 2.72 4.49 -2.40 -0.01 2.71 16 16 C 0.10 1.36 5.98 -67.93 -0.41 0.95 16 17 H 0.14 2.18 7.40 -51.93 -0.38 1.80 16 18 N -0.69 -7.36 5.51 -54.78 -0.30 -7.66 16 19 C 0.56 6.64 7.77 -12.36 -0.10 6.54 16 20 O -0.52 -8.28 15.91 5.32 0.08 -8.20 16 21 C -0.09 -0.84 5.87 -104.98 -0.62 -1.46 16 22 C -0.08 -0.51 9.54 -39.19 -0.37 -0.88 16 23 C -0.09 -0.50 9.81 -39.62 -0.39 -0.89 16 24 C -0.06 -0.42 6.33 -39.32 -0.25 -0.67 16 25 Cl -0.04 -0.31 28.60 -51.86 -1.48 -1.80 16 26 C 0.11 0.93 7.27 -39.45 -0.29 0.64 16 27 F -0.12 -1.18 16.82 2.25 0.04 -1.14 16 28 C -0.08 -0.77 9.57 -39.12 -0.37 -1.14 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.66 5.06 -51.93 -0.26 1.40 16 33 H 0.04 0.82 6.79 -51.93 -0.35 0.47 16 34 H 0.40 2.93 6.86 -40.82 -0.28 2.65 16 35 H 0.15 0.49 6.40 -52.49 -0.34 0.15 16 36 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.16 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -32.69 329.48 -8.74 -41.42 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.77 Total: 0.18 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.34 Total: -4.21 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.07 Total: -49.44 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.16 Total: 18.22 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.48 Total: -1.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.69 -8.74 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961857825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.776 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds