Wall clock time and date at job start Tue Mar 31 2020 13:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00157 * 2 1 4 4 H 1.48506 * 109.46982 * 265.38761 * 3 2 1 5 5 H 1.48505 * 109.46860 * 25.38342 * 3 2 1 6 6 H 1.48490 * 109.47227 * 145.38541 * 3 2 1 7 7 C 1.38814 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00267 * 343.43002 * 7 2 1 9 9 N 1.36942 * 120.00016 * 163.44100 * 7 2 1 10 10 C 1.48138 * 127.83791 * 160.87651 * 9 7 2 11 11 C 1.54395 * 104.61771 * 140.41132 * 10 9 7 12 12 H 1.08997 * 117.61236 * 242.76703 * 11 10 9 13 13 C 1.54278 * 104.95962 * 23.86441 * 11 10 9 14 14 H 1.09004 * 121.81938 * 222.18103 * 13 11 10 15 15 C 1.48150 * 127.83473 * 340.86956 * 9 7 2 16 16 C 1.53000 * 118.12094 * 87.19021 * 11 10 9 17 17 H 1.08990 * 117.44371 * 16.10838 * 16 11 10 18 18 N 1.46494 * 117.43871 * 160.81095 * 16 11 10 19 19 C 1.34776 * 119.99995 * 204.99575 * 18 16 11 20 20 O 1.21557 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.47789 * 120.00499 * 179.97438 * 19 18 16 22 22 C 1.39626 * 120.11808 * 359.72634 * 21 19 18 23 23 C 1.37899 * 119.91870 * 179.76531 * 22 21 19 24 24 C 1.38484 * 120.15477 * 0.48906 * 23 22 21 25 25 Cl 1.73601 * 119.87749 * 179.76481 * 24 23 22 26 26 C 1.38698 * 120.24466 * 359.78501 * 24 23 22 27 27 F 1.35099 * 119.95700 * 179.97438 * 26 24 23 28 28 C 1.38134 * 120.07999 * 359.95862 * 26 24 23 29 29 H 0.96993 * 120.00418 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.40853 * 21.62544 * 10 9 7 31 31 H 1.09004 * 110.40842 * 259.19541 * 10 9 7 32 32 H 1.09002 * 110.40558 * 338.37512 * 15 9 7 33 33 H 1.08998 * 110.40336 * 100.80863 * 15 9 7 34 34 H 0.97000 * 120.00941 * 24.99637 * 18 16 11 35 35 H 1.08000 * 120.04345 * 359.97438 * 22 21 19 36 36 H 1.07996 * 119.92246 * 180.27499 * 23 22 21 37 37 H 1.07997 * 120.07670 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3956 5 1 1.4022 2.6789 0.6002 6 1 3.4955 1.4703 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5039 -2.1182 0.2658 9 7 3.3371 -1.2266 -0.3385 10 6 4.3320 -2.2824 -0.0384 11 6 5.1891 -2.3853 -1.3185 12 1 5.1760 -3.3308 -1.8606 13 6 5.0381 -1.0145 -2.0101 14 1 4.9008 -0.9266 -3.0879 15 6 4.1030 -0.2033 -1.0875 16 6 6.3949 -1.4536 -1.4557 17 1 6.7527 -0.9587 -0.5530 18 7 7.4302 -1.8273 -2.4224 19 6 8.6937 -1.3870 -2.2607 20 8 8.9743 -0.6801 -1.3125 21 6 9.7384 -1.7645 -3.2356 22 6 9.4203 -2.5819 -4.3220 23 6 10.3972 -2.9276 -5.2318 24 6 11.6951 -2.4743 -5.0649 25 17 12.9206 -2.9189 -6.2113 26 6 12.0196 -1.6667 -3.9850 27 9 13.2877 -1.2281 -3.8275 28 6 11.0477 -1.3099 -3.0705 29 1 -0.4850 0.8399 -0.0004 30 1 3.8319 -3.2301 0.1614 31 1 4.9504 -1.9915 0.8108 32 1 3.4302 0.4176 -1.6791 33 1 4.6857 0.4122 -0.4021 34 1 7.2065 -2.3917 -3.1790 35 1 8.4098 -2.9402 -4.4515 36 1 10.1504 -3.5561 -6.0746 37 1 11.3003 -0.6808 -2.2299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961857825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:04 Heat of formation + Delta-G solvation = -9.148460 kcal Electronic energy + Delta-G solvation = -23639.358319 eV Core-core repulsion = 19744.431121 eV Total energy + Delta-G solvation = -3894.927198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.14406 -41.59822 -40.46503 -39.29417 -37.64146 -36.28231 -34.56463 -32.94980 -32.22545 -31.45554 -29.42470 -27.72830 -25.54894 -24.08278 -23.40595 -22.21230 -21.85565 -21.10982 -19.55319 -18.94579 -18.22293 -17.73889 -17.60520 -17.30926 -16.99305 -16.85709 -16.05933 -15.78122 -15.50603 -15.24063 -15.13660 -14.69773 -14.60958 -14.28455 -14.13113 -13.82198 -13.50686 -13.41092 -13.14712 -12.95804 -12.68418 -12.63380 -12.42397 -12.12232 -12.07818 -11.77793 -11.53032 -11.32769 -10.97146 -10.79371 -10.25721 -10.02430 -9.77288 -9.15137 -8.17944 -5.48217 -0.69066 -0.11435 0.80298 1.26938 1.38673 1.43504 1.46225 1.70708 2.37244 2.39337 2.78364 2.85797 3.04759 3.25835 3.36974 3.45081 3.70523 3.72811 3.82512 3.88723 3.98757 4.26724 4.31006 4.34507 4.51280 4.67952 4.74118 4.76525 4.76787 4.83134 4.94054 4.97014 5.14866 5.23785 5.37015 5.43608 5.58902 6.09763 6.36484 6.66591 7.02407 7.47584 8.11562 9.01955 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.002252 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.939100 B =12429.053666 C =12722.039911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.040 4.040 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.267 1.267 7 C -0.223 4.223 8 H 0.068 0.932 9 N -0.626 5.626 10 C 0.147 3.853 11 C -0.154 4.154 12 H 0.149 0.851 13 C -0.177 4.177 14 H 0.136 0.864 15 C 0.121 3.879 16 C 0.118 3.882 17 H 0.115 0.885 18 N -0.671 5.671 19 C 0.563 3.437 20 O -0.571 6.571 21 C -0.106 4.106 22 C -0.064 4.064 23 C -0.076 4.076 24 C -0.056 4.056 25 Cl -0.042 7.042 26 C 0.089 3.911 27 F -0.133 7.133 28 C -0.093 4.093 29 H 0.263 0.737 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.422 0.578 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.180 -9.034 -15.551 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.234 4.234 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.238 1.238 6 H -0.192 1.192 7 C -0.351 4.351 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.022 3.978 11 C -0.174 4.174 12 H 0.167 0.833 13 C -0.198 4.198 14 H 0.154 0.846 15 C -0.004 4.004 16 C 0.010 3.990 17 H 0.133 0.867 18 N -0.321 5.321 19 C 0.351 3.649 20 O -0.451 6.451 21 C -0.109 4.109 22 C -0.083 4.083 23 C -0.094 4.094 24 C -0.084 4.084 25 Cl -0.013 7.013 26 C 0.069 3.931 27 F -0.111 7.111 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.261 0.739 35 H 0.198 0.802 36 H 0.203 0.797 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 26.269 -8.493 -14.926 31.385 hybrid contribution 0.134 1.004 0.087 1.017 sum 26.403 -7.489 -14.839 31.199 Atomic orbital electron populations 1.69886 1.06960 1.27184 1.56711 1.25632 0.95916 1.00660 1.01196 0.85963 0.77895 0.80377 0.78214 1.19704 1.23836 1.19166 1.18609 0.82911 0.93969 1.39640 0.91424 1.45662 1.05548 1.21110 1.62837 1.21344 0.89655 0.92582 0.94181 1.24224 0.97860 0.95568 0.99790 0.83303 1.24192 0.96953 0.98532 1.00170 0.84587 1.21664 0.93073 0.92399 0.93270 1.21462 0.82282 1.01168 0.94042 0.86748 1.44965 1.06774 1.51882 1.28527 1.18357 0.82570 0.79239 0.84726 1.90815 1.81976 1.38907 1.33362 1.19658 0.92586 1.01489 0.97183 1.21726 1.01751 0.93973 0.90849 1.21328 0.88399 0.98968 1.00746 1.21490 0.93237 1.00875 0.92773 1.98419 1.53799 1.91164 1.57869 1.17310 0.80112 0.99339 0.96349 1.91546 1.36383 1.87834 1.95349 1.21175 0.91434 0.99723 0.98945 0.92847 0.91389 0.94617 0.92761 0.95138 0.73885 0.80168 0.79742 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.30 13.97 21.65 0.30 -60.00 16 2 C -0.04 -2.34 5.49 84.86 0.47 -1.88 16 3 Si 0.95 47.13 24.49 68.60 1.68 48.81 16 4 H -0.27 -12.64 6.35 99.48 0.63 -12.00 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.27 -12.93 6.33 99.48 0.63 -12.30 16 7 C -0.22 -12.59 10.78 84.03 0.91 -11.68 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 9 N -0.63 -29.07 3.19 -688.12 -2.20 -31.26 16 10 C 0.15 5.26 7.04 86.54 0.61 5.87 16 11 C -0.15 -4.00 7.06 -9.89 -0.07 -4.07 16 12 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 13 C -0.18 -5.17 7.06 -9.89 -0.07 -5.24 16 14 H 0.14 3.32 8.14 -2.38 -0.02 3.30 16 15 C 0.12 4.96 4.49 86.53 0.39 5.34 16 16 C 0.12 2.94 5.98 44.99 0.27 3.21 16 17 H 0.11 3.50 7.40 -2.39 -0.02 3.48 16 18 N -0.67 -11.62 5.51 -445.49 -2.46 -14.08 16 19 C 0.56 11.98 7.77 86.77 0.67 12.65 16 20 O -0.57 -17.67 15.91 -3.90 -0.06 -17.73 16 21 C -0.11 -1.59 5.87 -20.09 -0.12 -1.71 16 22 C -0.06 -0.46 9.54 22.52 0.21 -0.25 16 23 C -0.08 -0.52 9.81 22.25 0.22 -0.30 16 24 C -0.06 -0.70 6.33 22.44 0.14 -0.55 16 25 Cl -0.04 -0.53 28.60 -2.72 -0.08 -0.60 16 26 C 0.09 1.46 7.27 22.36 0.16 1.62 16 27 F -0.13 -2.54 16.82 44.97 0.76 -1.79 16 28 C -0.09 -1.62 9.57 22.57 0.22 -1.40 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 2.41 5.06 -2.39 -0.01 2.40 16 33 H 0.03 1.30 6.79 -2.39 -0.02 1.28 16 34 H 0.42 3.71 6.86 -92.71 -0.64 3.08 16 35 H 0.18 -0.02 6.40 -2.91 -0.02 -0.04 16 36 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.15 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -74.76 329.48 2.30 -72.46 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 0.35 Total: 2.59 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.01 Total: 1.61 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.35 Total: -105.34 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.06 Total: -17.73 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.76 Total: -1.79 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.68 Total: 48.81 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -74.76 2.30 -72.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961857825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.311 kcal (2) G-P(sol) polarization free energy of solvation -74.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds