Wall clock time and date at job start Tue Mar 31 2020 13:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86791 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47307 * 239.99879 * 3 2 1 5 5 H 1.48498 * 109.47411 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47214 * 119.99930 * 3 2 1 7 7 C 1.38813 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00029 * 189.10243 * 7 2 1 9 9 N 1.36931 * 120.00363 * 9.09448 * 7 2 1 10 10 C 1.48142 * 127.83607 * 15.57907 * 9 7 2 11 11 C 1.54394 * 104.62072 * 140.40790 * 10 9 7 12 12 H 1.08996 * 118.18299 * 244.20352 * 11 10 9 13 13 C 1.54287 * 104.95602 * 23.86658 * 11 10 9 14 14 H 1.09004 * 123.12871 * 221.63758 * 13 11 10 15 15 C 1.48148 * 127.83936 * 195.56951 * 9 7 2 16 16 C 1.53002 * 59.72415 * 114.13700 * 13 11 10 17 17 H 1.08994 * 117.44514 * 252.39412 * 16 13 11 18 18 N 1.46501 * 117.44206 * 107.64574 * 16 13 11 19 19 C 1.34778 * 119.99923 * 155.00676 * 18 16 13 20 20 O 1.21548 * 119.99873 * 359.72092 * 19 18 16 21 21 C 1.47857 * 119.99699 * 180.02562 * 19 18 16 22 22 C 1.39569 * 120.12847 * 359.71623 * 21 19 18 23 23 C 1.38171 * 119.85157 * 179.76601 * 22 21 19 24 24 F 1.35106 * 119.94882 * 180.27645 * 23 22 21 25 25 C 1.38572 * 120.10982 * 0.51488 * 23 22 21 26 26 C 1.38414 * 120.25217 * 359.74357 * 25 23 22 27 27 Cl 1.73598 * 119.92535 * 179.97438 * 26 25 23 28 28 C 1.38112 * 120.14770 * 359.97438 * 26 25 23 29 29 H 0.97002 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.41028 * 259.19333 * 10 9 7 31 31 H 1.08999 * 110.41125 * 21.62356 * 10 9 7 32 32 H 1.08998 * 110.40550 * 100.80894 * 15 9 7 33 33 H 1.08990 * 110.40775 * 338.37702 * 15 9 7 34 34 H 0.96998 * 120.00016 * 334.99855 * 18 16 13 35 35 H 1.07999 * 120.07391 * 0.02562 * 22 21 19 36 36 H 1.07998 * 119.88041 * 179.75705 * 25 23 22 37 37 H 1.07993 * 120.05763 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0799 -1.2081 0.1485 9 7 1.3383 -2.3807 -0.1864 10 6 -0.0343 -2.5710 -0.7100 11 6 0.0636 -3.8173 -1.6161 12 1 -0.1234 -3.6942 -2.6828 13 6 1.2858 -4.5977 -1.0892 14 1 2.0175 -5.0714 -1.7437 15 6 1.8194 -3.7546 0.0890 16 6 -0.1187 -5.1932 -0.9720 17 1 -0.5687 -5.2271 0.0201 18 7 -0.4529 -6.3132 -1.8552 19 6 -1.4126 -7.1896 -1.4984 20 8 -1.9972 -7.0537 -0.4414 21 6 -1.7496 -8.3203 -2.3896 22 6 -1.0797 -8.4791 -3.6037 23 6 -1.3958 -9.5405 -4.4299 24 9 -0.7446 -9.6993 -5.6030 25 6 -2.3830 -10.4397 -4.0596 26 6 -3.0539 -10.2833 -2.8591 27 17 -4.2897 -11.4144 -2.4040 28 6 -2.7424 -9.2295 -2.0225 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7319 -2.7499 0.1082 31 1 -0.3434 -1.7022 -1.2910 32 1 1.4113 -4.1182 1.0320 33 1 2.9088 -3.7786 0.1108 34 1 0.0163 -6.4239 -2.6969 35 1 -0.3130 -7.7763 -3.8947 36 1 -2.6298 -11.2657 -4.7101 37 1 -3.2665 -9.1092 -1.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961860596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:32 Heat of formation + Delta-G solvation = 4.670302 kcal Electronic energy + Delta-G solvation = -23573.485710 eV Core-core repulsion = 19679.157738 eV Total energy + Delta-G solvation = -3894.327971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.46037 -40.57042 -39.14658 -38.14857 -36.91797 -34.68500 -32.96976 -31.65637 -30.97986 -30.14567 -27.20990 -25.94436 -24.70672 -23.32392 -21.94610 -20.80402 -20.39675 -19.36440 -18.64784 -17.37221 -16.91610 -16.80129 -16.43188 -16.21535 -16.13526 -15.26377 -15.00021 -14.76359 -14.38383 -13.97326 -13.65898 -13.63885 -13.32557 -12.80611 -12.56163 -12.38578 -12.21275 -11.88814 -11.61768 -11.58035 -11.51401 -11.03890 -10.83958 -10.48946 -10.28169 -10.25919 -10.13504 -9.76590 -9.61992 -9.31568 -9.26584 -8.78828 -8.44282 -6.90670 -5.82385 -3.17153 0.07878 0.42222 1.44628 2.30366 2.83233 3.19062 3.37364 3.41864 3.43192 3.56291 4.07276 4.21725 4.25732 4.40110 4.44616 4.46438 4.77035 5.04905 5.10481 5.27026 5.28866 5.33180 5.46418 5.51638 5.55595 5.77259 5.83026 6.01009 6.02825 6.15877 6.44878 6.63305 6.68032 6.82651 7.30790 7.35287 7.50007 7.68350 8.00705 8.17320 9.07716 9.70525 10.46905 11.31845 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.002226 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.049619 B =12577.994780 C =13107.314140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.185 3.815 11 C -0.176 4.176 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.105 0.895 15 C 0.155 3.845 16 C 0.093 3.907 17 H 0.135 0.865 18 N -0.688 5.688 19 C 0.561 3.439 20 O -0.522 6.522 21 C -0.084 4.084 22 C -0.119 4.119 23 C 0.110 3.890 24 F -0.128 7.128 25 C -0.126 4.126 26 C -0.016 4.016 27 Cl -0.047 7.047 28 C -0.062 4.062 29 H 0.256 0.744 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.398 0.602 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -22.702 -9.782 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.198 4.198 12 H 0.121 0.879 13 C -0.203 4.203 14 H 0.123 0.877 15 C 0.028 3.972 16 C -0.013 4.013 17 H 0.152 0.848 18 N -0.337 5.337 19 C 0.347 3.653 20 O -0.399 6.399 21 C -0.088 4.088 22 C -0.138 4.138 23 C 0.091 3.909 24 F -0.106 7.106 25 C -0.146 4.146 26 C -0.042 4.042 27 Cl -0.018 7.018 28 C -0.081 4.081 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.234 0.766 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.409 -22.396 -8.972 24.725 hybrid contribution 0.738 0.560 -0.875 1.275 sum -4.671 -21.836 -9.847 24.404 Atomic orbital electron populations 1.69883 1.05069 1.25648 1.55435 1.24910 0.95653 0.98033 1.01611 0.86178 0.78540 0.82879 0.78015 1.21078 1.21522 1.20942 1.18938 0.90796 0.82262 1.43762 0.90545 1.45161 1.13317 0.99966 1.73118 1.21070 0.86962 0.92414 0.93697 1.24764 1.01682 0.92751 1.00602 0.87910 1.24315 0.90082 1.02272 1.03601 0.87744 1.21131 0.97277 0.85897 0.92873 1.21932 0.99109 0.84715 0.95505 0.84754 1.45283 1.37973 1.27114 1.23292 1.17889 0.80078 0.81606 0.85776 1.90826 1.51412 1.74191 1.23424 1.19758 0.97654 0.96770 0.94635 1.21433 1.00941 0.97792 0.93674 1.17214 0.94129 0.96229 0.83360 1.91571 1.79463 1.95229 1.44330 1.21169 0.95971 1.00598 0.96814 1.20481 0.94562 0.93933 0.95271 1.98411 1.51703 1.59519 1.92150 1.21259 0.95602 0.91171 1.00087 0.93414 0.95461 0.89006 0.95426 0.92870 0.76638 0.83493 0.83079 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.53 10.86 55.49 0.60 -25.93 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 9 N -0.59 -14.88 3.38 -168.86 -0.57 -15.45 16 10 C 0.18 4.36 5.70 -2.41 -0.01 4.35 16 11 C -0.18 -3.21 7.06 -89.21 -0.63 -3.84 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 C -0.18 -3.04 7.06 -89.22 -0.63 -3.67 16 14 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.16 3.15 7.04 -2.41 -0.02 3.14 16 16 C 0.09 1.48 5.98 -67.93 -0.41 1.07 16 17 H 0.13 2.44 7.40 -51.93 -0.38 2.05 16 18 N -0.69 -8.55 5.51 -54.74 -0.30 -8.86 16 19 C 0.56 7.39 7.77 -12.32 -0.10 7.30 16 20 O -0.52 -8.84 15.91 5.32 0.08 -8.76 16 21 C -0.08 -0.85 5.87 -104.98 -0.62 -1.46 16 22 C -0.12 -0.96 9.52 -39.11 -0.37 -1.33 16 23 C 0.11 0.87 7.29 -39.48 -0.29 0.58 16 24 F -0.13 -1.07 17.26 2.25 0.04 -1.03 16 25 C -0.13 -0.91 9.80 -39.39 -0.39 -1.29 16 26 C -0.02 -0.13 6.31 -39.56 -0.25 -0.38 16 27 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 28 C -0.06 -0.58 9.37 -39.14 -0.37 -0.95 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.73 6.86 -40.82 -0.28 3.45 16 35 H 0.15 0.90 6.40 -52.49 -0.34 0.56 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.16 1.53 7.65 -52.49 -0.40 1.13 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -31.04 337.02 -9.74 -40.77 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.82 Total: 2.56 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.32 Total: -3.15 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.27 Total: -50.24 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.04 -9.74 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961860596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.443 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds