Wall clock time and date at job start Tue Mar 31 2020 13:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86791 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47307 * 239.99879 * 3 2 1 5 5 H 1.48498 * 109.47411 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47214 * 119.99930 * 3 2 1 7 7 C 1.38813 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00029 * 189.10243 * 7 2 1 9 9 N 1.36931 * 120.00363 * 9.09448 * 7 2 1 10 10 C 1.48142 * 127.83607 * 15.57907 * 9 7 2 11 11 C 1.54394 * 104.62072 * 140.40790 * 10 9 7 12 12 H 1.08996 * 118.18299 * 244.20352 * 11 10 9 13 13 C 1.54287 * 104.95602 * 23.86658 * 11 10 9 14 14 H 1.09004 * 123.12871 * 221.63758 * 13 11 10 15 15 C 1.48148 * 127.83936 * 195.56951 * 9 7 2 16 16 C 1.53002 * 59.72415 * 114.13700 * 13 11 10 17 17 H 1.08994 * 117.44514 * 252.39412 * 16 13 11 18 18 N 1.46501 * 117.44206 * 107.64574 * 16 13 11 19 19 C 1.34778 * 119.99923 * 155.00676 * 18 16 13 20 20 O 1.21548 * 119.99873 * 359.72092 * 19 18 16 21 21 C 1.47857 * 119.99699 * 180.02562 * 19 18 16 22 22 C 1.39569 * 120.12847 * 359.71623 * 21 19 18 23 23 C 1.38171 * 119.85157 * 179.76601 * 22 21 19 24 24 F 1.35106 * 119.94882 * 180.27645 * 23 22 21 25 25 C 1.38572 * 120.10982 * 0.51488 * 23 22 21 26 26 C 1.38414 * 120.25217 * 359.74357 * 25 23 22 27 27 Cl 1.73598 * 119.92535 * 179.97438 * 26 25 23 28 28 C 1.38112 * 120.14770 * 359.97438 * 26 25 23 29 29 H 0.97002 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.41028 * 259.19333 * 10 9 7 31 31 H 1.08999 * 110.41125 * 21.62356 * 10 9 7 32 32 H 1.08998 * 110.40550 * 100.80894 * 15 9 7 33 33 H 1.08990 * 110.40775 * 338.37702 * 15 9 7 34 34 H 0.96998 * 120.00016 * 334.99855 * 18 16 13 35 35 H 1.07999 * 120.07391 * 0.02562 * 22 21 19 36 36 H 1.07998 * 119.88041 * 179.75705 * 25 23 22 37 37 H 1.07993 * 120.05763 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0799 -1.2081 0.1485 9 7 1.3383 -2.3807 -0.1864 10 6 -0.0343 -2.5710 -0.7100 11 6 0.0636 -3.8173 -1.6161 12 1 -0.1234 -3.6942 -2.6828 13 6 1.2858 -4.5977 -1.0892 14 1 2.0175 -5.0714 -1.7437 15 6 1.8194 -3.7546 0.0890 16 6 -0.1187 -5.1932 -0.9720 17 1 -0.5687 -5.2271 0.0201 18 7 -0.4529 -6.3132 -1.8552 19 6 -1.4126 -7.1896 -1.4984 20 8 -1.9972 -7.0537 -0.4414 21 6 -1.7496 -8.3203 -2.3896 22 6 -1.0797 -8.4791 -3.6037 23 6 -1.3958 -9.5405 -4.4299 24 9 -0.7446 -9.6993 -5.6030 25 6 -2.3830 -10.4397 -4.0596 26 6 -3.0539 -10.2833 -2.8591 27 17 -4.2897 -11.4144 -2.4040 28 6 -2.7424 -9.2295 -2.0225 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7319 -2.7499 0.1082 31 1 -0.3434 -1.7022 -1.2910 32 1 1.4113 -4.1182 1.0320 33 1 2.9088 -3.7786 0.1108 34 1 0.0163 -6.4239 -2.6969 35 1 -0.3130 -7.7763 -3.8947 36 1 -2.6298 -11.2657 -4.7101 37 1 -3.2665 -9.1092 -1.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961860596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:32 Heat of formation + Delta-G solvation = -13.629257 kcal Electronic energy + Delta-G solvation = -23574.279238 eV Core-core repulsion = 19679.157738 eV Total energy + Delta-G solvation = -3895.121500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.07732 -41.57521 -40.34552 -39.26570 -37.56026 -36.18498 -34.53535 -32.76472 -31.79402 -31.53317 -28.93101 -27.71018 -25.72779 -24.07243 -23.35479 -22.00878 -21.80550 -20.90004 -19.54532 -18.85535 -18.19825 -17.47962 -17.40560 -17.12843 -16.85098 -16.70808 -16.04850 -15.97131 -15.70300 -15.26536 -14.93283 -14.63822 -14.56211 -14.31150 -13.79921 -13.35375 -13.26894 -13.24130 -12.94829 -12.87071 -12.67525 -12.49169 -12.19132 -12.17514 -12.07047 -11.89375 -11.67338 -11.32508 -10.82499 -10.72301 -10.30803 -9.95871 -9.77249 -8.92321 -7.91379 -5.28394 -0.62419 -0.22511 0.81989 1.44196 1.47537 1.50604 1.57441 1.76673 2.35178 2.49014 2.84872 2.89043 3.26124 3.34384 3.57819 3.65962 3.76363 3.79731 3.81750 3.91308 4.07602 4.13790 4.38528 4.41264 4.50944 4.64031 4.73285 4.85130 4.88010 4.90810 5.00407 5.26877 5.34782 5.41595 5.44159 5.51861 5.64712 6.16902 6.34213 7.00177 7.00344 7.67733 8.45690 9.22342 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.002226 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.049619 B =12577.994780 C =13107.314140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.188 3.812 11 C -0.182 4.182 12 H 0.125 0.875 13 C -0.157 4.157 14 H 0.144 0.856 15 C 0.146 3.854 16 C 0.115 3.885 17 H 0.109 0.891 18 N -0.673 5.673 19 C 0.563 3.437 20 O -0.567 6.567 21 C -0.096 4.096 22 C -0.106 4.106 23 C 0.109 3.891 24 F -0.127 7.127 25 C -0.111 4.111 26 C -0.018 4.018 27 Cl -0.043 7.043 28 C -0.067 4.067 29 H 0.250 0.750 30 H -0.005 1.005 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.067 0.933 34 H 0.418 0.582 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -24.621 -11.914 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.204 4.204 12 H 0.142 0.858 13 C -0.177 4.177 14 H 0.162 0.838 15 C 0.021 3.979 16 C 0.008 3.992 17 H 0.127 0.873 18 N -0.323 5.323 19 C 0.351 3.649 20 O -0.446 6.446 21 C -0.100 4.100 22 C -0.125 4.125 23 C 0.089 3.911 24 F -0.106 7.106 25 C -0.130 4.130 26 C -0.045 4.045 27 Cl -0.014 7.014 28 C -0.087 4.087 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.257 0.743 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.978 -24.367 -11.139 27.086 hybrid contribution 0.262 1.042 -0.180 1.089 sum -3.717 -23.324 -11.319 26.191 Atomic orbital electron populations 1.70097 1.06630 1.25859 1.57072 1.25780 0.96480 1.01448 1.02055 0.85107 0.77150 0.78370 0.78408 1.20020 1.22177 1.20092 1.19367 0.91440 0.83444 1.42721 0.89784 1.45470 1.13688 1.01226 1.73708 1.20778 0.86100 0.93783 0.93144 1.24421 1.03932 0.91444 1.00573 0.85753 1.24224 0.90518 1.01104 1.01897 0.83795 1.21300 0.98208 0.84312 0.94116 1.21437 0.98354 0.84619 0.94812 0.87277 1.45026 1.38043 1.25740 1.23516 1.18327 0.79160 0.81938 0.85481 1.90813 1.52925 1.75352 1.25553 1.19372 0.99163 0.96230 0.95200 1.21560 1.00525 0.97973 0.92434 1.17198 0.94286 0.96286 0.83333 1.91582 1.79483 1.95218 1.44287 1.21411 0.94727 1.00614 0.96269 1.20435 0.94930 0.93733 0.95450 1.98416 1.51546 1.59210 1.92202 1.21245 0.95608 0.91704 1.00108 0.94119 0.98724 0.92415 0.96191 0.91438 0.74299 0.81271 0.80864 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 10.86 21.65 0.24 -57.01 16 2 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 3 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.36 10.35 84.03 0.87 -12.49 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 9 N -0.62 -31.51 3.38 -688.16 -2.33 -33.84 16 10 C 0.19 9.25 5.70 86.54 0.49 9.74 16 11 C -0.18 -6.50 7.06 -9.88 -0.07 -6.57 16 12 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 13 C -0.16 -4.89 7.06 -9.88 -0.07 -4.96 16 14 H 0.14 3.44 8.14 -2.38 -0.02 3.42 16 15 C 0.15 5.86 7.04 86.53 0.61 6.47 16 16 C 0.11 3.54 5.98 44.99 0.27 3.80 16 17 H 0.11 4.04 7.40 -2.39 -0.02 4.03 16 18 N -0.67 -15.22 5.51 -445.39 -2.46 -17.68 16 19 C 0.56 14.24 7.77 86.79 0.67 14.91 16 20 O -0.57 -19.48 15.91 -3.87 -0.06 -19.54 16 21 C -0.10 -1.76 5.87 -20.10 -0.12 -1.88 16 22 C -0.11 -1.36 9.52 22.58 0.21 -1.15 16 23 C 0.11 1.35 7.29 22.33 0.16 1.52 16 24 F -0.13 -1.69 17.26 44.97 0.78 -0.92 16 25 C -0.11 -1.27 9.80 22.39 0.22 -1.05 16 26 C -0.02 -0.26 6.31 22.28 0.14 -0.12 16 27 Cl -0.04 -0.59 28.95 -2.72 -0.08 -0.67 16 28 C -0.07 -1.20 9.37 22.55 0.21 -0.99 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 3.20 6.51 -2.39 -0.02 3.19 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.42 6.21 6.86 -92.71 -0.64 5.57 16 35 H 0.17 1.34 6.40 -2.91 -0.02 1.32 16 36 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.15 2.89 7.65 -2.91 -0.02 2.87 16 Total: -1.00 -70.22 337.02 2.68 -67.54 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.50 Total: 10.90 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.07 Total: 4.08 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -4.55 Total: -108.53 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.92 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -70.22 2.68 -67.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961860596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.909 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds