Wall clock time and date at job start Tue Mar 31 2020 13:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47203 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46990 * 30.00002 * 3 2 1 6 6 H 1.48495 * 109.47348 * 149.99831 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21562 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.47774 * 120.00260 * 180.02562 * 19 18 16 22 22 C 1.39635 * 120.14224 * 359.97438 * 21 19 18 23 23 C 1.37904 * 119.91386 * 180.02562 * 22 21 19 24 24 C 1.38391 * 120.20717 * 0.02562 * 23 22 21 25 25 C 1.38469 * 120.29492 * 0.02562 * 24 23 22 26 26 F 1.35100 * 119.95892 * 179.97438 * 25 24 23 27 27 C 1.38384 * 120.07593 * 359.67997 * 25 24 23 28 28 Cl 1.73598 * 120.10095 * 180.29311 * 27 25 24 29 29 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 31 31 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 32 32 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 33 33 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 34 34 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 35 35 H 1.07997 * 120.04707 * 0.03289 * 22 21 19 36 36 H 1.07999 * 119.89431 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.85281 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1998 -7.5035 -0.6955 21 6 -1.9677 -8.4846 1.2807 22 6 -2.1289 -8.3618 2.6623 23 6 -2.7163 -9.3826 3.3796 24 6 -3.1463 -10.5290 2.7346 25 6 -2.9898 -10.6604 1.3651 26 9 -3.4115 -11.7827 0.7424 27 6 -2.4074 -9.6409 0.6326 28 17 -2.2178 -9.8017 -1.0854 29 1 -0.4850 0.8400 0.0004 30 1 2.9073 -3.7538 0.3762 31 1 1.8506 -4.1842 -1.0040 32 1 -0.5204 -2.8478 -1.0095 33 1 -0.7143 -1.7149 0.3636 34 1 -1.0300 -6.1901 2.0947 35 1 -1.7941 -7.4684 3.1685 36 1 -2.8405 -9.2874 4.4482 37 1 -3.6060 -11.3249 3.3019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961886883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:35 Heat of formation + Delta-G solvation = 20.835546 kcal Electronic energy + Delta-G solvation = -23882.033711 eV Core-core repulsion = 19988.406717 eV Total energy + Delta-G solvation = -3893.626994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.36993 -40.46839 -38.97247 -37.90820 -36.68511 -34.49456 -32.86583 -31.58020 -30.93279 -30.00756 -27.07862 -25.90469 -24.61345 -23.20144 -21.93969 -20.71407 -20.36615 -19.22940 -18.58340 -17.21125 -16.93186 -16.89523 -16.41671 -16.21868 -15.97710 -14.92949 -14.82551 -14.70942 -14.35100 -13.80430 -13.59957 -13.31586 -13.07852 -12.74285 -12.69908 -12.22217 -12.15673 -11.84089 -11.52130 -11.45529 -11.24166 -11.10073 -10.86513 -10.36702 -10.21844 -10.06437 -9.71999 -9.65709 -9.53553 -9.22270 -9.15803 -8.83414 -8.38974 -6.94525 -5.68453 -3.12441 0.15813 0.47378 1.77994 2.44598 2.85425 3.25675 3.38575 3.43301 3.45096 3.64651 4.11542 4.21545 4.31169 4.38593 4.45379 4.61241 4.90043 5.12640 5.21843 5.32506 5.33835 5.38980 5.44613 5.55913 5.64172 5.78189 5.87783 6.07992 6.10082 6.22315 6.51565 6.65544 6.76030 6.86394 7.29892 7.44243 7.52602 7.77010 8.12652 8.25167 9.10268 9.74498 10.45433 11.34986 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.002423 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.931265 B =11550.888751 C =11986.927761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.160 3.840 11 C -0.184 4.184 12 H 0.102 0.898 13 C -0.170 4.170 14 H 0.102 0.898 15 C 0.156 3.844 16 C 0.093 3.907 17 H 0.133 0.867 18 N -0.689 5.689 19 C 0.553 3.447 20 O -0.508 6.508 21 C -0.096 4.096 22 C -0.086 4.086 23 C -0.094 4.094 24 C -0.121 4.121 25 C 0.099 3.901 26 F -0.124 7.124 27 C -0.028 4.028 28 Cl -0.007 7.007 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.137 0.863 34 H 0.397 0.603 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -21.336 8.936 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.206 4.206 12 H 0.120 0.880 13 C -0.191 4.191 14 H 0.120 0.880 15 C 0.031 3.969 16 C -0.013 4.013 17 H 0.151 0.849 18 N -0.338 5.338 19 C 0.338 3.662 20 O -0.383 6.383 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.140 4.140 25 C 0.079 3.921 26 F -0.102 7.102 27 C -0.057 4.057 28 Cl 0.022 6.978 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.154 0.846 34 H 0.232 0.768 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.394 -21.166 7.848 23.755 hybrid contribution 0.306 0.492 0.469 0.745 sum -7.088 -20.675 8.317 23.385 Atomic orbital electron populations 1.69474 1.04964 1.24789 1.57943 1.24757 0.95704 0.97710 1.02749 0.86013 0.78434 0.83094 0.77601 1.21605 1.21646 1.20732 1.19117 0.90403 0.82157 1.42588 0.90229 1.46131 1.01318 0.99388 1.85666 1.21081 0.94801 0.85795 0.95004 1.24402 0.91149 1.02625 1.02391 0.87953 1.24649 0.99749 0.91701 1.03001 0.88006 1.22559 0.85426 0.95148 0.93737 1.21968 0.97669 0.85275 0.96354 0.84940 1.45283 1.60650 1.16792 1.11091 1.17882 0.79064 0.81845 0.87383 1.90894 1.54624 1.79277 1.13476 1.19752 1.01841 0.94415 0.94000 1.21426 0.97453 0.99711 0.91931 1.21072 0.96976 0.92152 1.00996 1.21343 1.00916 1.00009 0.91752 1.17306 1.00485 0.83527 0.90778 1.91564 1.87571 1.48418 1.82663 1.21105 1.01493 0.94657 0.88494 1.98452 1.95343 1.97265 1.06693 0.93559 0.93006 0.95483 0.96353 0.84585 0.76784 0.83927 0.83549 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.12 55.49 0.56 -25.76 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.21 -5.90 10.42 -15.05 -0.16 -6.05 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.21 3.46 -165.72 -0.57 -15.79 16 10 C 0.16 3.33 7.05 -2.41 -0.02 3.32 16 11 C -0.18 -3.22 7.06 -89.22 -0.63 -3.85 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 13 C -0.17 -3.14 6.96 -89.23 -0.62 -3.77 16 14 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 15 C 0.16 3.68 6.43 -0.31 0.00 3.68 16 16 C 0.09 1.52 5.97 -67.93 -0.41 1.12 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.08 16 18 N -0.69 -8.90 5.51 -54.77 -0.30 -9.20 16 19 C 0.55 7.74 7.77 -12.36 -0.10 7.65 16 20 O -0.51 -8.90 13.53 5.31 0.07 -8.82 16 21 C -0.10 -1.06 5.88 -104.95 -0.62 -1.67 16 22 C -0.09 -0.63 9.54 -39.18 -0.37 -1.00 16 23 C -0.09 -0.51 10.03 -39.65 -0.40 -0.91 16 24 C -0.12 -0.78 10.02 -39.44 -0.40 -1.18 16 25 C 0.10 0.96 7.27 -39.44 -0.29 0.67 16 26 F -0.12 -1.28 16.83 2.25 0.04 -1.24 16 27 C -0.03 -0.33 6.36 -39.00 -0.25 -0.58 16 28 Cl -0.01 -0.10 25.68 -51.86 -1.33 -1.43 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 3.60 5.34 -51.93 -0.28 3.33 16 34 H 0.40 3.83 6.86 -40.82 -0.28 3.55 16 35 H 0.14 0.70 6.40 -52.49 -0.34 0.36 16 36 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -31.96 331.22 -9.69 -41.66 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.78 Total: 1.93 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.34 Total: -3.07 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.31 Total: -50.74 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.33 Total: -1.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.96 -9.69 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961886883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.492 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds