Wall clock time and date at job start Tue Mar 31 2020 13:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47203 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46990 * 30.00002 * 3 2 1 6 6 H 1.48495 * 109.47348 * 149.99831 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.08996 * 117.44388 * 252.35672 * 16 13 11 18 18 N 1.46497 * 117.44114 * 107.60285 * 16 13 11 19 19 C 1.34777 * 120.00128 * 155.00200 * 18 16 13 20 20 O 1.21562 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.47774 * 120.00260 * 180.02562 * 19 18 16 22 22 C 1.39635 * 120.14224 * 359.97438 * 21 19 18 23 23 C 1.37904 * 119.91386 * 180.02562 * 22 21 19 24 24 C 1.38391 * 120.20717 * 0.02562 * 23 22 21 25 25 C 1.38469 * 120.29492 * 0.02562 * 24 23 22 26 26 F 1.35100 * 119.95892 * 179.97438 * 25 24 23 27 27 C 1.38384 * 120.07593 * 359.67997 * 25 24 23 28 28 Cl 1.73598 * 120.10095 * 180.29311 * 27 25 24 29 29 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 31 31 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 32 32 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 33 33 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 34 34 H 0.97006 * 120.00392 * 334.99965 * 18 16 13 35 35 H 1.07997 * 120.04707 * 0.03289 * 22 21 19 36 36 H 1.07999 * 119.89431 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.85281 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3530 -5.2957 -0.7159 18 7 -0.9191 -6.2776 1.1350 19 6 -1.3384 -7.3940 0.5072 20 8 -1.1998 -7.5035 -0.6955 21 6 -1.9677 -8.4846 1.2807 22 6 -2.1289 -8.3618 2.6623 23 6 -2.7163 -9.3826 3.3796 24 6 -3.1463 -10.5290 2.7346 25 6 -2.9898 -10.6604 1.3651 26 9 -3.4115 -11.7827 0.7424 27 6 -2.4074 -9.6409 0.6326 28 17 -2.2178 -9.8017 -1.0854 29 1 -0.4850 0.8400 0.0004 30 1 2.9073 -3.7538 0.3762 31 1 1.8506 -4.1842 -1.0040 32 1 -0.5204 -2.8478 -1.0095 33 1 -0.7143 -1.7149 0.3636 34 1 -1.0300 -6.1901 2.0947 35 1 -1.7941 -7.4684 3.1685 36 1 -2.8405 -9.2874 4.4482 37 1 -3.6060 -11.3249 3.3019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961886883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:34 Heat of formation + Delta-G solvation = 1.134916 kcal Electronic energy + Delta-G solvation = -23882.887994 eV Core-core repulsion = 19988.406717 eV Total energy + Delta-G solvation = -3894.481277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.08431 -41.46884 -40.17844 -39.03622 -37.55718 -36.02588 -34.44544 -32.61967 -31.82618 -31.32158 -28.81502 -27.67966 -25.59659 -23.89284 -23.36126 -21.97805 -21.76457 -20.78837 -19.48840 -18.88918 -18.05734 -17.57496 -17.33882 -17.09416 -16.95542 -16.65066 -15.98890 -15.68549 -15.36285 -15.24426 -14.88997 -14.57795 -14.47919 -13.93664 -13.77628 -13.26866 -13.17818 -13.06394 -13.00242 -12.81517 -12.72019 -12.59802 -12.26357 -12.08276 -11.97796 -11.71557 -11.64293 -10.97810 -10.76913 -10.65145 -10.23517 -9.84493 -9.69269 -8.95696 -7.75107 -5.22326 -0.53528 -0.14647 0.96485 1.49215 1.50928 1.59530 1.61157 1.78935 2.45183 2.50495 2.90232 2.95216 3.32323 3.38656 3.56764 3.67764 3.75646 3.86122 3.92006 4.09299 4.16184 4.29036 4.38961 4.55196 4.60614 4.76158 4.83231 4.91021 4.99889 5.00163 5.11560 5.29490 5.39022 5.46772 5.51262 5.56794 5.78810 6.27098 6.42896 7.03409 7.10365 7.70328 8.45039 9.26342 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.002423 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.931265 B =11550.888751 C =11986.927761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.231 4.231 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.152 3.848 11 C -0.168 4.168 12 H 0.136 0.864 13 C -0.170 4.170 14 H 0.125 0.875 15 C 0.152 3.848 16 C 0.116 3.884 17 H 0.106 0.894 18 N -0.673 5.673 19 C 0.551 3.449 20 O -0.552 6.552 21 C -0.117 4.117 22 C -0.074 4.074 23 C -0.075 4.075 24 C -0.103 4.103 25 C 0.082 3.918 26 F -0.134 7.134 27 C -0.052 4.052 28 Cl -0.043 7.043 29 H 0.249 0.751 30 H 0.062 0.938 31 H 0.020 0.980 32 H -0.005 1.005 33 H 0.109 0.891 34 H 0.417 0.583 35 H 0.172 0.828 36 H 0.193 0.807 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -22.599 12.750 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.026 3.974 11 C -0.189 4.189 12 H 0.153 0.847 13 C -0.191 4.191 14 H 0.143 0.857 15 C 0.028 3.972 16 C 0.009 3.991 17 H 0.124 0.876 18 N -0.324 5.324 19 C 0.338 3.662 20 O -0.430 6.430 21 C -0.121 4.121 22 C -0.092 4.092 23 C -0.093 4.093 24 C -0.122 4.122 25 C 0.062 3.938 26 F -0.113 7.113 27 C -0.081 4.081 28 Cl -0.014 7.014 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.127 0.873 34 H 0.256 0.744 35 H 0.190 0.810 36 H 0.211 0.789 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.433 -22.470 11.704 26.403 hybrid contribution 0.284 0.801 -0.681 1.089 sum -7.148 -21.669 11.023 25.341 Atomic orbital electron populations 1.69733 1.06193 1.25021 1.58899 1.25591 0.96618 1.00844 1.03076 0.85001 0.77633 0.78945 0.77260 1.21785 1.21832 1.19345 1.19489 0.90955 0.83392 1.42098 0.89825 1.46427 1.02138 1.00459 1.85933 1.21210 0.96088 0.84429 0.95649 1.24316 0.90115 1.01941 1.02546 0.84660 1.24316 1.01354 0.90768 1.02683 0.85705 1.22306 0.84812 0.96423 0.93649 1.21434 0.96976 0.85189 0.95474 0.87618 1.45000 1.60080 1.15516 1.11823 1.18404 0.78280 0.82351 0.87125 1.90881 1.56315 1.80155 1.15636 1.19560 1.03808 0.93297 0.95435 1.21823 0.96145 1.01235 0.90034 1.21615 0.94342 0.90423 1.02921 1.21830 0.99060 1.01165 0.90135 1.17607 1.01271 0.82961 0.92009 1.91537 1.87779 1.48810 1.83141 1.21337 1.03609 0.96178 0.86981 1.98429 1.95724 1.97434 1.09829 0.94131 0.91972 0.96239 0.98746 0.87323 0.74368 0.81034 0.78948 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.57 10.12 21.65 0.22 -55.35 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.23 -12.83 10.42 84.03 0.88 -11.95 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.16 3.46 -678.23 -2.35 -34.51 16 10 C 0.15 6.31 7.05 86.53 0.61 6.92 16 11 C -0.17 -5.58 7.06 -9.88 -0.07 -5.65 16 12 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 13 C -0.17 -6.15 6.96 -9.90 -0.07 -6.22 16 14 H 0.13 3.94 8.14 -2.39 -0.02 3.93 16 15 C 0.15 7.45 6.43 85.78 0.55 8.00 16 16 C 0.12 3.72 5.97 44.99 0.27 3.99 16 17 H 0.11 4.07 7.40 -2.39 -0.02 4.05 16 18 N -0.67 -15.93 5.51 -445.47 -2.46 -18.39 16 19 C 0.55 15.00 7.77 86.77 0.67 15.67 16 20 O -0.55 -19.96 13.53 -3.91 -0.05 -20.01 16 21 C -0.12 -2.36 5.88 -20.08 -0.12 -2.48 16 22 C -0.07 -0.73 9.54 22.53 0.21 -0.52 16 23 C -0.08 -0.38 10.03 22.23 0.22 -0.16 16 24 C -0.10 -0.88 10.02 22.36 0.22 -0.65 16 25 C 0.08 1.43 7.27 22.36 0.16 1.59 16 26 F -0.13 -2.69 16.83 44.97 0.76 -1.93 16 27 C -0.05 -1.19 6.36 22.65 0.14 -1.05 16 28 Cl -0.04 -1.25 25.68 -2.72 -0.07 -1.32 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.11 5.98 5.34 -2.39 -0.01 5.97 16 34 H 0.42 6.38 6.86 -92.70 -0.64 5.74 16 35 H 0.17 0.66 6.40 -2.91 -0.02 0.64 16 36 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 Total: -1.00 -74.87 331.22 2.73 -72.14 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.50 Total: 8.13 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 4.16 Total: 4.08 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.59 Total: -108.25 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.76 Total: -1.93 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.32 kcal Total: -74.87 2.73 -72.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961886883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.274 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds