Wall clock time and date at job start Tue Mar 31 2020 13:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47387 * 300.00282 * 3 2 1 6 6 H 1.48508 * 109.47050 * 60.00186 * 3 2 1 7 7 C 1.38806 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00131 * 189.04899 * 7 2 1 9 9 N 1.36934 * 120.00291 * 9.05317 * 7 2 1 10 10 C 1.47541 * 127.52402 * 16.45527 * 9 7 2 11 11 C 1.54385 * 105.09321 * 140.87650 * 10 9 7 12 12 H 1.08990 * 117.61747 * 243.48129 * 11 10 9 13 13 C 1.54293 * 104.95749 * 22.56251 * 11 10 9 14 14 H 1.09003 * 121.81256 * 223.98033 * 13 11 10 15 15 C 1.48141 * 127.84218 * 195.48386 * 9 7 2 16 16 C 1.52997 * 59.72304 * 115.03895 * 13 11 10 17 17 H 1.08999 * 117.44500 * 252.35010 * 16 13 11 18 18 N 1.46501 * 117.44159 * 107.64706 * 16 13 11 19 19 C 1.34776 * 120.00093 * 154.99819 * 18 16 13 20 20 O 1.21575 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.47613 * 120.00252 * 180.02562 * 19 18 16 22 22 C 1.39891 * 120.17984 * 89.72415 * 21 19 18 23 23 F 1.35099 * 120.09661 * 0.02562 * 22 21 19 24 24 C 1.38241 * 119.79539 * 179.76846 * 22 21 19 25 25 C 1.38288 * 120.15364 * 0.51318 * 24 22 21 26 26 C 1.38349 * 120.36098 * 359.73876 * 25 24 22 27 27 C 1.38069 * 120.20446 * 0.02562 * 26 25 24 28 28 Cl 1.73598 * 120.07926 * 180.02562 * 27 26 25 29 29 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.09005 * 111.28234 * 21.36091 * 10 9 7 31 31 H 1.09006 * 109.07365 * 259.25789 * 10 9 7 32 32 H 1.08998 * 110.41338 * 100.79387 * 15 9 7 33 33 H 1.09004 * 110.40557 * 338.48339 * 15 9 7 34 34 H 0.97006 * 120.00267 * 335.00007 * 18 16 13 35 35 H 1.08002 * 119.92318 * 180.24700 * 24 22 21 36 36 H 1.07994 * 119.81905 * 179.71971 * 25 24 22 37 37 H 1.08003 * 119.89695 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1476 9 7 1.3384 -2.3807 -0.1855 10 6 -0.0232 -2.5637 -0.7235 11 6 0.0622 -3.8219 -1.6142 12 1 -0.1265 -3.6997 -2.6807 13 6 1.2869 -4.5994 -1.0887 14 1 2.0182 -5.0440 -1.7637 15 6 1.8202 -3.7545 0.0884 16 6 -0.1161 -5.1978 -0.9693 17 1 -0.5645 -5.2330 0.0236 18 7 -0.4492 -6.3189 -1.8516 19 6 -1.4065 -7.1973 -1.4931 20 8 -1.9938 -7.0591 -0.4376 21 6 -1.7418 -8.3272 -2.3818 22 6 -1.0652 -9.5452 -2.2566 23 9 -0.1020 -9.6921 -1.3208 24 6 -1.3889 -10.5996 -3.0900 25 6 -2.3710 -10.4487 -4.0518 26 6 -3.0406 -9.2454 -4.1847 27 6 -2.7326 -8.1840 -3.3571 28 17 -3.5752 -6.6757 -3.5263 29 1 -0.4850 0.8401 0.0004 30 1 -0.3350 -1.7013 -1.3128 31 1 -0.7137 -2.7297 0.1035 32 1 1.4143 -4.1187 1.0322 33 1 2.9098 -3.7779 0.1100 34 1 0.0191 -6.4290 -2.6940 35 1 -0.8707 -11.5422 -2.9924 36 1 -2.6164 -11.2746 -4.7029 37 1 -3.8060 -9.1356 -4.9387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962381134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:55 Heat of formation + Delta-G solvation = 5.445533 kcal Electronic energy + Delta-G solvation = -24179.206726 eV Core-core repulsion = 20284.912371 eV Total energy + Delta-G solvation = -3894.294355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.38396 -40.32947 -39.12664 -38.08865 -36.86282 -34.53492 -32.82189 -31.66272 -31.00737 -30.12536 -27.16695 -25.85649 -24.53517 -23.30599 -21.98036 -20.74000 -20.31381 -19.30288 -18.44527 -17.59454 -17.21367 -16.89547 -16.53686 -15.93337 -15.72155 -15.22219 -14.74763 -14.45205 -14.34556 -13.83459 -13.68196 -13.57726 -13.26842 -12.74743 -12.65970 -12.24140 -12.14432 -11.80893 -11.60474 -11.49788 -11.39606 -11.00041 -10.84770 -10.43535 -10.20825 -10.19022 -10.05730 -9.76048 -9.50002 -9.25283 -9.17757 -8.75334 -8.38172 -6.85350 -5.79522 -3.14169 0.31153 0.46463 1.58036 2.35216 2.75654 2.97923 3.38219 3.44054 3.46735 3.64903 4.15176 4.24130 4.32941 4.43540 4.48330 4.58895 4.82873 5.11966 5.23160 5.35442 5.37865 5.39929 5.43646 5.55988 5.61187 5.83299 5.89397 6.07933 6.09808 6.22777 6.49973 6.67972 6.74427 6.88513 7.38246 7.42683 7.54744 7.72627 8.07692 8.21073 9.12077 9.74136 10.50659 11.34869 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.002829 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.731300 B = 9895.882206 C =10637.578412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.188 3.812 11 C -0.180 4.180 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.104 0.896 15 C 0.157 3.843 16 C 0.099 3.901 17 H 0.134 0.866 18 N -0.682 5.682 19 C 0.567 3.433 20 O -0.513 6.513 21 C -0.152 4.152 22 C 0.146 3.854 23 F -0.121 7.121 24 C -0.152 4.152 25 C -0.064 4.064 26 C -0.123 4.123 27 C 0.018 3.982 28 Cl -0.033 7.033 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.052 0.948 34 H 0.400 0.600 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -23.022 -12.093 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.061 3.939 11 C -0.201 4.201 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.122 0.878 15 C 0.030 3.970 16 C -0.007 4.007 17 H 0.151 0.849 18 N -0.330 5.330 19 C 0.350 3.650 20 O -0.388 6.388 21 C -0.157 4.157 22 C 0.126 3.874 23 F -0.099 7.099 24 C -0.171 4.171 25 C -0.082 4.082 26 C -0.142 4.142 27 C -0.010 4.010 28 Cl -0.003 7.003 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.234 0.766 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.515 -22.478 -11.237 25.729 hybrid contribution 0.766 0.811 -0.453 1.204 sum -4.749 -21.668 -11.690 25.074 Atomic orbital electron populations 1.69923 1.05054 1.25350 1.55587 1.24916 0.95643 0.98012 1.01657 0.86040 0.78861 0.83513 0.77283 1.20361 1.21627 1.21650 1.19028 0.90841 0.82290 1.43503 0.90530 1.45025 1.14066 1.00009 1.72502 1.20941 0.87113 0.92059 0.93749 1.24751 1.01953 0.92791 1.00630 0.87992 1.24330 0.90151 1.02516 1.03376 0.87755 1.21114 0.97228 0.85687 0.92951 1.21867 0.98713 0.84637 0.95444 0.84863 1.45309 1.37860 1.26654 1.23172 1.17701 0.80161 0.81487 0.85624 1.90851 1.50901 1.73896 1.23107 1.19897 1.00350 0.95527 0.99941 1.17483 0.87989 0.93066 0.88908 1.91594 1.59965 1.95889 1.62446 1.21236 1.00397 0.98817 0.96621 1.21127 0.93499 0.97149 0.96434 1.21125 1.01556 0.91631 0.99854 1.20762 0.94592 0.89861 0.95745 1.98455 1.75764 1.29396 1.96726 0.93564 0.89166 0.95703 0.95390 0.92920 0.76579 0.83346 0.83444 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.97 10.88 55.49 0.60 -26.37 16 2 C 0.00 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 22.00 29.56 -169.99 -5.03 16.98 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.39 10.34 -15.06 -0.16 -6.55 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.33 3.37 -169.36 -0.57 -15.90 16 10 C 0.19 4.60 5.64 -2.75 -0.02 4.58 16 11 C -0.18 -3.47 7.04 -89.21 -0.63 -4.10 16 12 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 13 C -0.18 -3.26 7.06 -89.21 -0.63 -3.89 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 15 C 0.16 3.33 7.05 -2.41 -0.02 3.31 16 16 C 0.10 1.72 6.00 -67.93 -0.41 1.31 16 17 H 0.13 2.63 7.40 -51.93 -0.38 2.24 16 18 N -0.68 -9.89 5.56 -54.82 -0.30 -10.19 16 19 C 0.57 8.79 5.95 -12.43 -0.07 8.72 16 20 O -0.51 -10.01 16.67 5.30 0.09 -9.92 16 21 C -0.15 -1.84 5.64 -104.88 -0.59 -2.43 16 22 C 0.15 1.52 7.29 -38.96 -0.28 1.24 16 23 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 24 C -0.15 -1.02 10.01 -39.56 -0.40 -1.42 16 25 C -0.06 -0.33 10.03 -39.52 -0.40 -0.73 16 26 C -0.12 -0.83 9.81 -39.60 -0.39 -1.22 16 27 C 0.02 0.19 6.35 -39.07 -0.25 -0.06 16 28 Cl -0.03 -0.38 28.04 -51.86 -1.45 -1.83 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.09 2.45 6.57 -51.93 -0.34 2.11 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.40 4.70 8.81 -40.82 -0.36 4.34 16 35 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.15 0.27 8.06 -52.49 -0.42 -0.16 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -33.27 339.68 -9.85 -43.12 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.01 Total: 1.89 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -4.33 Total: -1.47 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.27 Total: -52.46 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.45 Total: -1.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.27 -9.85 -43.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962381134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.567 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds