Wall clock time and date at job start Tue Mar 31 2020 13:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47387 * 300.00282 * 3 2 1 6 6 H 1.48508 * 109.47050 * 60.00186 * 3 2 1 7 7 C 1.38806 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00131 * 189.04899 * 7 2 1 9 9 N 1.36934 * 120.00291 * 9.05317 * 7 2 1 10 10 C 1.47541 * 127.52402 * 16.45527 * 9 7 2 11 11 C 1.54385 * 105.09321 * 140.87650 * 10 9 7 12 12 H 1.08990 * 117.61747 * 243.48129 * 11 10 9 13 13 C 1.54293 * 104.95749 * 22.56251 * 11 10 9 14 14 H 1.09003 * 121.81256 * 223.98033 * 13 11 10 15 15 C 1.48141 * 127.84218 * 195.48386 * 9 7 2 16 16 C 1.52997 * 59.72304 * 115.03895 * 13 11 10 17 17 H 1.08999 * 117.44500 * 252.35010 * 16 13 11 18 18 N 1.46501 * 117.44159 * 107.64706 * 16 13 11 19 19 C 1.34776 * 120.00093 * 154.99819 * 18 16 13 20 20 O 1.21575 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.47613 * 120.00252 * 180.02562 * 19 18 16 22 22 C 1.39891 * 120.17984 * 89.72415 * 21 19 18 23 23 F 1.35099 * 120.09661 * 0.02562 * 22 21 19 24 24 C 1.38241 * 119.79539 * 179.76846 * 22 21 19 25 25 C 1.38288 * 120.15364 * 0.51318 * 24 22 21 26 26 C 1.38349 * 120.36098 * 359.73876 * 25 24 22 27 27 C 1.38069 * 120.20446 * 0.02562 * 26 25 24 28 28 Cl 1.73598 * 120.07926 * 180.02562 * 27 26 25 29 29 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.09005 * 111.28234 * 21.36091 * 10 9 7 31 31 H 1.09006 * 109.07365 * 259.25789 * 10 9 7 32 32 H 1.08998 * 110.41338 * 100.79387 * 15 9 7 33 33 H 1.09004 * 110.40557 * 338.48339 * 15 9 7 34 34 H 0.97006 * 120.00267 * 335.00007 * 18 16 13 35 35 H 1.08002 * 119.92318 * 180.24700 * 24 22 21 36 36 H 1.07994 * 119.81905 * 179.71971 * 25 24 22 37 37 H 1.08003 * 119.89695 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1476 9 7 1.3384 -2.3807 -0.1855 10 6 -0.0232 -2.5637 -0.7235 11 6 0.0622 -3.8219 -1.6142 12 1 -0.1265 -3.6997 -2.6807 13 6 1.2869 -4.5994 -1.0887 14 1 2.0182 -5.0440 -1.7637 15 6 1.8202 -3.7545 0.0884 16 6 -0.1161 -5.1978 -0.9693 17 1 -0.5645 -5.2330 0.0236 18 7 -0.4492 -6.3189 -1.8516 19 6 -1.4065 -7.1973 -1.4931 20 8 -1.9938 -7.0591 -0.4376 21 6 -1.7418 -8.3272 -2.3818 22 6 -1.0652 -9.5452 -2.2566 23 9 -0.1020 -9.6921 -1.3208 24 6 -1.3889 -10.5996 -3.0900 25 6 -2.3710 -10.4487 -4.0518 26 6 -3.0406 -9.2454 -4.1847 27 6 -2.7326 -8.1840 -3.3571 28 17 -3.5752 -6.6757 -3.5263 29 1 -0.4850 0.8401 0.0004 30 1 -0.3350 -1.7013 -1.3128 31 1 -0.7137 -2.7297 0.1035 32 1 1.4143 -4.1187 1.0322 33 1 2.9098 -3.7779 0.1100 34 1 0.0191 -6.4290 -2.6940 35 1 -0.8707 -11.5422 -2.9924 36 1 -2.6164 -11.2746 -4.7029 37 1 -3.8060 -9.1356 -4.9387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962381134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:55 Heat of formation + Delta-G solvation = -15.937484 kcal Electronic energy + Delta-G solvation = -24180.133963 eV Core-core repulsion = 20284.912371 eV Total energy + Delta-G solvation = -3895.221592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.18398 -41.47610 -40.34022 -39.32372 -37.63593 -36.19948 -34.48607 -32.76358 -31.77988 -31.58589 -28.99143 -27.72539 -25.56526 -23.95479 -23.51630 -22.05859 -21.86879 -20.95522 -19.36483 -18.89038 -18.44575 -17.96332 -17.91176 -16.89887 -16.72124 -16.51887 -15.97659 -15.67649 -15.59217 -15.23866 -14.96418 -14.66167 -14.61213 -14.36221 -13.85347 -13.42029 -13.31376 -13.23145 -12.93034 -12.76794 -12.75580 -12.50887 -12.22924 -12.18844 -12.03307 -11.93544 -11.74353 -11.36484 -10.86703 -10.77003 -10.19545 -9.89669 -9.87702 -8.94393 -7.93819 -5.31626 -0.35501 -0.14322 0.83512 1.15674 1.46042 1.46883 1.58364 1.73248 2.25690 2.46622 2.74139 2.96459 3.21703 3.31829 3.56450 3.70930 3.73909 3.81547 3.84492 4.07335 4.09734 4.23917 4.32957 4.46002 4.59618 4.71012 4.82886 4.84008 4.95230 4.99534 5.10829 5.21284 5.30714 5.41114 5.47488 5.55876 5.60629 6.13800 6.22800 6.90202 6.98394 7.65073 8.42781 9.20445 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.002829 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.731300 B = 9895.882206 C =10637.578412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.194 3.806 11 C -0.183 4.183 12 H 0.122 0.878 13 C -0.157 4.157 14 H 0.142 0.858 15 C 0.149 3.851 16 C 0.116 3.884 17 H 0.106 0.894 18 N -0.669 5.669 19 C 0.567 3.433 20 O -0.564 6.564 21 C -0.178 4.178 22 C 0.125 3.875 23 F -0.138 7.138 24 C -0.137 4.137 25 C -0.040 4.040 26 C -0.112 4.112 27 C 0.004 3.996 28 Cl -0.057 7.057 29 H 0.250 0.750 30 H 0.058 0.942 31 H -0.010 1.010 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.417 0.583 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -26.045 -14.777 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.067 3.933 11 C -0.205 4.205 12 H 0.140 0.860 13 C -0.177 4.177 14 H 0.160 0.840 15 C 0.024 3.976 16 C 0.009 3.991 17 H 0.124 0.876 18 N -0.318 5.318 19 C 0.353 3.647 20 O -0.442 6.442 21 C -0.183 4.183 22 C 0.105 3.895 23 F -0.116 7.116 24 C -0.156 4.156 25 C -0.058 4.058 26 C -0.130 4.130 27 C -0.024 4.024 28 Cl -0.028 7.028 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.008 0.992 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.254 0.746 35 H 0.197 0.803 36 H 0.214 0.786 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.491 -25.548 -13.956 29.456 hybrid contribution 0.415 1.601 0.388 1.699 sum -4.076 -23.947 -13.568 27.824 Atomic orbital electron populations 1.70132 1.06704 1.25765 1.57021 1.25818 0.96495 1.01536 1.01890 0.84945 0.78346 0.78853 0.76733 1.18594 1.21620 1.21978 1.19450 0.91473 0.83371 1.42753 0.89734 1.45318 1.14335 1.01271 1.73055 1.20623 0.86314 0.93347 0.92977 1.24409 1.04071 0.91409 1.00570 0.86019 1.24250 0.90400 1.01215 1.01869 0.84027 1.21268 0.98248 0.84146 0.93959 1.21402 0.98316 0.84680 0.94668 0.87577 1.45136 1.37903 1.25456 1.23290 1.18309 0.79022 0.81971 0.85353 1.90816 1.52531 1.75303 1.25545 1.19660 1.02697 0.94906 1.01019 1.17821 0.88297 0.93602 0.89814 1.91548 1.60743 1.95965 1.63391 1.21665 1.00117 0.98583 0.95203 1.21712 0.91191 0.97442 0.95424 1.21550 1.01593 0.90894 0.99007 1.20938 0.94670 0.90056 0.96699 1.98446 1.76245 1.31280 1.96828 0.94099 0.92376 0.99194 0.96220 0.91259 0.74573 0.80294 0.78629 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.46 10.88 21.65 0.24 -58.22 16 2 C -0.06 -3.68 5.40 84.86 0.46 -3.22 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.24 -13.75 10.34 84.03 0.87 -12.89 16 8 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 9 N -0.62 -32.71 3.37 -689.72 -2.33 -35.03 16 10 C 0.19 10.01 5.64 86.65 0.49 10.50 16 11 C -0.18 -7.17 7.04 -9.88 -0.07 -7.24 16 12 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 13 C -0.16 -5.44 7.06 -9.88 -0.07 -5.51 16 14 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 15 C 0.15 6.36 7.05 86.54 0.61 6.97 16 16 C 0.12 4.11 6.00 44.99 0.27 4.38 16 17 H 0.11 4.44 7.40 -2.39 -0.02 4.42 16 18 N -0.67 -19.24 5.56 -445.63 -2.48 -21.72 16 19 C 0.57 17.93 5.95 86.72 0.52 18.45 16 20 O -0.56 -23.13 16.67 -3.95 -0.07 -23.19 16 21 C -0.18 -4.16 5.64 -20.03 -0.11 -4.27 16 22 C 0.12 2.37 7.29 22.67 0.17 2.54 16 23 F -0.14 -3.23 16.83 44.97 0.76 -2.48 16 24 C -0.14 -1.26 10.01 22.28 0.22 -1.04 16 25 C -0.04 -0.19 10.03 22.31 0.22 0.03 16 26 C -0.11 -1.08 9.81 22.26 0.22 -0.86 16 27 C 0.00 0.07 6.35 22.60 0.14 0.22 16 28 Cl -0.06 -1.31 28.04 -2.72 -0.08 -1.39 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.06 3.35 6.57 -2.38 -0.02 3.33 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.42 9.20 8.81 -92.70 -0.82 8.38 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.20 -0.81 8.06 -2.91 -0.02 -0.83 16 37 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -78.36 339.68 2.32 -76.04 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.31 Total: 9.91 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 3.93 Total: 8.06 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.57 Total: -114.97 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.19 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.76 Total: -2.48 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -78.36 2.32 -76.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962381134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.101 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds