Wall clock time and date at job start Tue Mar 31 2020 13:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47216 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47364 * 119.99956 * 3 2 1 7 7 C 1.38808 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 189.09577 * 7 2 1 9 9 N 1.36940 * 120.00117 * 9.10297 * 7 2 1 10 10 C 1.48148 * 127.83299 * 15.56943 * 9 7 2 11 11 C 1.54387 * 104.61472 * 140.41895 * 10 9 7 12 12 H 1.09000 * 117.61597 * 242.76121 * 11 10 9 13 13 C 1.54144 * 104.96705 * 23.82732 * 11 10 9 14 14 H 1.09008 * 121.78995 * 222.20060 * 13 11 10 15 15 C 1.48144 * 127.83902 * 195.56925 * 9 7 2 16 16 C 1.52991 * 59.75254 * 114.14054 * 13 11 10 17 17 H 1.09003 * 117.44466 * 252.37110 * 16 13 11 18 18 N 1.46502 * 117.44453 * 107.62869 * 16 13 11 19 19 C 1.34773 * 120.00135 * 135.99897 * 18 16 13 20 20 O 1.21579 * 120.00370 * 0.02562 * 19 18 16 21 21 C 1.47649 * 120.00253 * 179.97438 * 19 18 16 22 22 C 1.39704 * 120.12618 * 0.02562 * 21 19 18 23 23 C 1.37777 * 119.88774 * 179.97438 * 22 21 19 24 24 C 1.38718 * 120.15955 * 0.02562 * 23 22 21 25 25 F 1.35105 * 119.86810 * 179.97438 * 24 23 22 26 26 C 1.38562 * 120.26528 * 359.95712 * 24 23 22 27 27 C 1.38037 * 120.10216 * 359.78137 * 26 24 23 28 28 Cl 1.73596 * 120.07922 * 180.23341 * 27 26 24 29 29 H 0.96999 * 119.99948 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.41276 * 21.63181 * 10 9 7 31 31 H 1.09000 * 110.40356 * 259.19721 * 10 9 7 32 32 H 1.08997 * 110.40727 * 338.36829 * 15 9 7 33 33 H 1.09002 * 110.40441 * 100.80114 * 15 9 7 34 34 H 0.97003 * 120.00144 * 315.72202 * 18 16 13 35 35 H 1.07998 * 120.05622 * 359.97438 * 22 21 19 36 36 H 1.08006 * 119.91565 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.94816 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5710 -0.7102 11 6 0.0639 -3.8173 -1.6162 12 1 -0.1483 -3.6884 -2.6775 13 6 1.2856 -4.5965 -1.0905 14 1 2.0089 -5.0540 -1.7657 15 6 1.8197 -3.7545 0.0888 16 6 -0.1182 -5.1931 -0.9723 17 1 -0.5674 -5.2278 0.0203 18 7 -0.4525 -6.3131 -1.8556 19 6 -1.1060 -7.3855 -1.3664 20 8 -1.4186 -7.4233 -0.1921 21 6 -1.4434 -8.5140 -2.2567 22 6 -1.0859 -8.4732 -3.6066 23 6 -1.4027 -9.5292 -4.4329 24 6 -2.0759 -10.6319 -3.9277 25 9 -2.3841 -11.6639 -4.7433 26 6 -2.4332 -10.6793 -2.5898 27 6 -2.1164 -9.6297 -1.7510 28 17 -2.5590 -9.6924 -0.0736 29 1 -0.4850 0.8400 0.0004 30 1 -0.3433 -1.7022 -1.2912 31 1 -0.7316 -2.7500 0.1081 32 1 2.9092 -3.7784 0.1106 33 1 1.4117 -4.1182 1.0318 34 1 -0.2070 -6.2811 -2.7935 35 1 -0.5622 -7.6154 -4.0018 36 1 -1.1270 -9.4980 -5.4767 37 1 -2.9568 -11.5404 -2.2017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962461691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:37 Heat of formation + Delta-G solvation = -5.071245 kcal Electronic energy + Delta-G solvation = -23758.645171 eV Core-core repulsion = 19863.894775 eV Total energy + Delta-G solvation = -3894.750396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.10992 -41.47886 -40.29993 -39.06691 -37.49323 -36.09801 -34.45909 -32.62450 -31.99672 -31.40164 -28.90813 -27.64453 -25.27336 -24.27139 -23.33539 -21.96440 -21.71549 -20.87396 -19.35823 -18.84696 -18.53560 -18.01650 -17.15997 -16.83335 -16.67422 -16.30387 -16.01791 -15.83150 -15.50534 -15.12796 -14.76265 -14.62526 -14.56737 -14.10592 -14.04813 -13.73054 -13.32616 -13.20453 -12.88982 -12.67431 -12.49901 -12.44090 -12.25286 -12.11826 -12.03776 -11.86076 -11.64726 -10.86378 -10.74566 -10.66463 -10.21227 -9.97883 -9.64406 -8.91422 -7.90930 -5.27754 -0.59411 -0.10344 0.97557 1.47935 1.50892 1.56998 1.57804 1.84298 2.42171 2.49674 2.90106 2.99360 3.28576 3.42829 3.51373 3.63993 3.80659 3.84942 3.91455 3.98454 4.15667 4.20021 4.40081 4.52878 4.59262 4.70780 4.82268 4.88561 4.90612 4.95260 5.00909 5.29677 5.41826 5.45191 5.49842 5.54904 5.66044 6.17692 6.45880 7.01149 7.14182 7.68221 8.46492 9.22785 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.002400 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.122907 B =11662.412457 C =12221.387022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.176 4.176 12 H 0.132 0.868 13 C -0.163 4.163 14 H 0.139 0.861 15 C 0.147 3.853 16 C 0.118 3.882 17 H 0.105 0.895 18 N -0.675 5.675 19 C 0.553 3.447 20 O -0.551 6.551 21 C -0.151 4.151 22 C -0.032 4.032 23 C -0.143 4.143 24 C 0.137 3.863 25 F -0.129 7.129 26 C -0.158 4.158 27 C 0.025 3.975 28 Cl -0.039 7.039 29 H 0.250 0.750 30 H 0.060 0.940 31 H -0.006 1.006 32 H 0.064 0.936 33 H 0.017 0.983 34 H 0.417 0.583 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -23.338 -13.159 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.197 4.197 12 H 0.149 0.851 13 C -0.184 4.184 14 H 0.157 0.843 15 C 0.021 3.979 16 C 0.011 3.989 17 H 0.123 0.877 18 N -0.326 5.326 19 C 0.341 3.659 20 O -0.429 6.429 21 C -0.156 4.156 22 C -0.051 4.051 23 C -0.162 4.162 24 C 0.117 3.883 25 F -0.107 7.107 26 C -0.178 4.178 27 C -0.004 4.004 28 Cl -0.010 7.010 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.012 0.988 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.308 -23.150 -12.161 26.358 hybrid contribution 0.039 0.885 0.162 0.900 sum -3.269 -22.265 -11.999 25.503 Atomic orbital electron populations 1.70090 1.06579 1.25864 1.57057 1.25764 0.96487 1.01366 1.02012 0.85114 0.77169 0.78403 0.78384 1.19971 1.22085 1.20228 1.19362 0.91410 0.83484 1.42797 0.89946 1.45474 1.13789 1.01104 1.73706 1.20811 0.85970 0.93915 0.93199 1.24316 1.03704 0.90882 1.00794 0.85067 1.24263 0.91018 1.01584 1.01550 0.84333 1.21272 0.98015 0.84458 0.94122 1.21355 0.97679 0.84819 0.95028 0.87667 1.44991 1.57900 1.16487 1.13226 1.18353 0.77679 0.82470 0.87394 1.90888 1.53650 1.80291 1.18110 1.19775 1.05417 0.94746 0.95628 1.21483 0.94931 0.99172 0.89465 1.21535 0.99540 0.91733 1.03347 1.17824 0.97287 0.85831 0.87378 1.91566 1.90741 1.56669 1.71710 1.21079 1.04446 1.00147 0.92093 1.20850 0.97624 0.94625 0.87265 1.98444 1.90601 1.98050 1.13903 0.94088 0.92181 0.98849 0.91799 0.96556 0.74415 0.80445 0.80003 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 10.86 21.65 0.24 -56.71 16 2 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 3 Si 0.98 45.05 29.56 68.60 2.03 47.08 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.24 -13.47 10.35 84.03 0.87 -12.60 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.33 16 9 N -0.62 -31.70 3.38 -688.07 -2.32 -34.02 16 10 C 0.19 9.12 5.70 86.53 0.49 9.61 16 11 C -0.18 -6.14 7.05 -9.94 -0.07 -6.21 16 12 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 13 C -0.16 -5.24 7.05 -9.92 -0.07 -5.31 16 14 H 0.14 3.54 8.14 -2.38 -0.02 3.52 16 15 C 0.15 6.07 7.04 86.55 0.61 6.68 16 16 C 0.12 3.68 5.98 44.99 0.27 3.95 16 17 H 0.11 3.99 7.40 -2.39 -0.02 3.98 16 18 N -0.67 -15.20 5.51 -445.61 -2.46 -17.66 16 19 C 0.55 14.26 7.76 86.73 0.67 14.93 16 20 O -0.55 -19.01 13.53 -3.97 -0.05 -19.07 16 21 C -0.15 -2.85 5.88 -20.07 -0.12 -2.97 16 22 C -0.03 -0.33 9.53 22.52 0.21 -0.11 16 23 C -0.14 -1.19 10.01 22.28 0.22 -0.97 16 24 C 0.14 1.66 7.30 22.46 0.16 1.83 16 25 F -0.13 -1.66 17.26 44.97 0.78 -0.89 16 26 C -0.16 -2.33 9.79 22.30 0.22 -2.11 16 27 C 0.02 0.49 6.35 22.59 0.14 0.63 16 28 Cl -0.04 -0.98 26.02 -2.72 -0.07 -1.05 16 29 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.06 3.28 6.51 -2.39 -0.02 3.27 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 5.88 6.85 -92.71 -0.64 5.25 16 35 H 0.18 0.65 6.40 -2.91 -0.02 0.63 16 36 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -72.89 332.80 2.71 -70.18 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.50 Total: 7.87 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 4.08 Total: 4.27 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.55 Total: -108.39 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.78 Total: -0.89 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -72.89 2.71 -70.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962461691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.108 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds