Wall clock time and date at job start Tue Mar 31 2020 14:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99733 * 2 1 4 4 H 1.48496 * 109.47144 * 240.00468 * 3 2 1 5 5 H 1.48506 * 109.46714 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47118 * 120.00033 * 3 2 1 7 7 C 1.38810 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.47020 * 125.64793 * 359.97438 * 9 7 2 11 11 C 1.54328 * 107.27149 * 178.98286 * 10 9 7 12 12 C 1.55152 * 102.94174 * 337.81188 * 11 10 9 13 13 H 1.09003 * 111.00478 * 153.61285 * 12 11 10 14 14 N 1.46501 * 111.00551 * 277.42398 * 12 11 10 15 15 C 1.34774 * 120.00271 * 205.00349 * 14 12 11 16 16 O 1.21777 * 120.00036 * 359.97438 * 15 14 12 17 17 C 1.41719 * 120.00192 * 179.97438 * 15 14 12 18 18 S 1.75655 * 125.10075 * 359.97438 * 17 15 14 19 19 C 1.75555 * 91.21153 * 179.97438 * 18 17 15 20 20 C 1.34197 * 110.67990 * 359.97438 * 19 18 17 21 21 C 1.37151 * 125.10228 * 180.02562 * 17 15 14 22 22 O 1.37654 * 124.48644 * 0.20065 * 21 17 15 23 23 C 1.43378 * 114.55603 * 163.29330 * 22 21 17 24 24 C 1.53227 * 109.14043 * 46.40076 * 23 22 21 25 25 O 1.38243 * 124.14542 * 180.11741 * 20 19 18 26 26 C 1.47425 * 125.64936 * 180.02562 * 9 7 2 27 27 H 0.97001 * 120.00812 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.88178 * 59.57321 * 10 9 7 29 29 H 1.08992 * 110.01811 * 298.47862 * 10 9 7 30 30 H 1.08991 * 110.72104 * 219.44482 * 11 10 9 31 31 H 1.09002 * 110.71555 * 96.17459 * 11 10 9 32 32 H 0.97004 * 119.99938 * 24.99918 * 14 12 11 33 33 H 1.08006 * 124.65723 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.47375 * 286.53611 * 23 22 21 35 35 H 1.08994 * 109.57549 * 166.32947 * 23 22 21 36 36 H 1.09002 * 109.52244 * 177.90365 * 24 23 22 37 37 H 1.08995 * 109.52261 * 57.77764 * 24 23 22 38 38 H 1.09001 * 110.36323 * 85.24290 * 26 9 7 39 39 H 1.09002 * 110.36707 * 322.92429 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2849 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1373 -2.5328 0.0005 11 6 -0.4482 -4.0442 -0.0261 12 6 0.8518 -4.6561 -0.6116 13 1 0.9836 -5.6856 -0.2784 14 7 0.8575 -4.5758 -2.0744 15 6 1.5889 -5.4493 -2.7944 16 8 2.2454 -6.3050 -2.2291 17 6 1.5940 -5.3719 -4.2095 18 16 0.6996 -4.1963 -5.1600 19 6 1.3172 -4.8794 -6.6546 20 6 2.1331 -5.9143 -6.4011 21 6 2.2973 -6.2043 -5.0423 22 8 3.0978 -7.2395 -4.6152 23 6 3.4290 -8.1950 -5.6316 24 6 3.8649 -7.4506 -6.8980 25 8 2.7743 -6.6540 -7.3772 26 6 1.9337 -3.7311 -0.0005 27 1 -0.4851 0.8400 0.0004 28 1 -0.5581 -2.0523 -0.8829 29 1 -0.5560 -2.0840 0.9012 30 1 -1.2986 -4.2516 -0.6754 31 1 -0.6307 -4.4181 0.9814 32 1 0.3348 -3.8939 -2.5247 33 1 1.0738 -4.5166 -7.6424 34 1 2.5555 -8.8084 -5.8522 35 1 4.2434 -8.8304 -5.2840 36 1 4.1539 -8.1714 -7.6630 37 1 4.7122 -6.8049 -6.6675 38 1 2.1673 -4.0416 1.0178 39 1 2.8329 -3.7404 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015936768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:31 Heat of formation + Delta-G solvation = -33.727548 kcal Electronic energy + Delta-G solvation = -25318.633527 eV Core-core repulsion = 21548.144512 eV Total energy + Delta-G solvation = -3770.489015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21233 -39.50686 -37.39324 -37.02594 -35.69735 -33.68775 -31.89278 -30.11202 -29.91559 -29.03351 -27.23865 -25.06799 -24.20539 -23.95385 -21.43724 -20.08114 -19.90187 -19.37143 -19.11922 -17.42636 -17.16874 -16.71603 -16.50077 -15.73884 -15.33983 -15.02767 -14.89109 -14.62003 -14.50059 -14.34059 -13.80270 -13.75674 -13.30766 -13.14137 -12.88458 -12.36705 -11.90626 -11.79114 -11.45913 -11.28744 -11.17439 -10.98380 -10.92884 -10.86436 -10.67754 -10.32051 -10.13912 -9.93477 -9.66318 -9.64319 -8.82715 -8.64568 -8.44930 -8.12606 -6.79648 -5.69622 -3.02052 0.31053 1.22459 1.46430 2.03849 3.02478 3.23482 3.42285 3.43386 3.46653 3.47772 3.54201 3.92767 4.32403 4.52423 4.55998 4.60894 4.99050 5.11986 5.14759 5.24233 5.28670 5.39926 5.49914 5.52447 5.78823 5.81382 5.87060 6.22938 6.39520 6.41767 6.52399 6.54511 6.73452 6.87460 7.07488 7.55491 7.58015 7.81177 7.87052 8.27037 8.52394 9.24457 9.84325 10.50375 11.42283 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.003528 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.491842 B = 7933.798297 C = 8497.025294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.130 3.870 13 H 0.092 0.908 14 N -0.702 5.702 15 C 0.588 3.412 16 O -0.527 6.527 17 C -0.271 4.271 18 S 0.228 5.772 19 C -0.216 4.216 20 C 0.032 3.968 21 C 0.121 3.879 22 O -0.259 6.259 23 C 0.013 3.987 24 C 0.017 3.983 25 O -0.293 6.293 26 C 0.125 3.875 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.181 0.819 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.029 0.971 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -14.771 -15.006 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.024 3.976 13 H 0.110 0.890 14 N -0.353 5.353 15 C 0.375 3.625 16 O -0.406 6.406 17 C -0.391 4.391 18 S 0.492 5.508 19 C -0.354 4.354 20 C -0.025 4.025 21 C 0.060 3.940 22 O -0.172 6.172 23 C -0.063 4.063 24 C -0.059 4.059 25 O -0.208 6.208 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.761 -13.983 -14.221 19.958 hybrid contribution 1.335 0.026 -0.723 1.518 sum 2.096 -13.957 -14.944 20.555 Atomic orbital electron populations 1.69934 1.04793 1.25054 1.57403 1.24757 0.95706 0.97516 1.02410 0.86216 0.78461 0.83287 0.77906 1.21232 1.21623 1.21244 1.19016 0.90418 0.82408 1.43452 0.90614 1.44470 1.01466 0.99890 1.87240 1.21173 0.84579 0.87913 1.01274 1.23239 0.95692 1.00080 1.00314 1.22152 0.97475 0.99617 0.78321 0.88961 1.45731 1.48519 1.33401 1.07605 1.15500 0.80312 0.82125 0.84530 1.90850 1.42254 1.36099 1.71387 1.22696 1.11059 1.07050 0.98330 1.84425 1.44469 1.29808 0.92092 1.24988 1.05951 0.99945 1.04494 1.18204 1.01026 0.96476 0.86800 1.18839 0.93873 0.91194 0.90112 1.87201 1.62996 1.32891 1.34108 1.23704 1.02924 0.91161 0.88559 1.23611 0.88879 0.95378 0.98011 1.87028 1.45775 1.57672 1.30360 1.21952 0.94834 0.86339 0.97116 0.93777 0.93636 0.93697 0.91570 0.90815 0.76716 0.80185 0.90401 0.85721 0.85897 0.90397 0.95338 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 10 C 0.18 4.11 5.36 -3.06 -0.02 4.10 16 11 C -0.15 -2.79 6.55 -24.90 -0.16 -2.95 16 12 C 0.13 2.43 3.43 -65.79 -0.23 2.20 16 13 H 0.09 1.67 7.54 -51.93 -0.39 1.28 16 14 N -0.70 -12.58 5.17 -54.58 -0.28 -12.87 16 15 C 0.59 10.87 7.59 -14.93 -0.11 10.75 16 16 O -0.53 -11.19 15.50 -11.90 -0.18 -11.37 16 17 C -0.27 -4.29 6.25 -38.65 -0.24 -4.53 16 18 S 0.23 2.81 22.17 -107.50 -2.38 0.42 16 19 C -0.22 -2.39 11.17 29.31 0.33 -2.06 16 20 C 0.03 0.40 6.55 -40.38 -0.26 0.13 16 21 C 0.12 1.81 6.58 -39.35 -0.26 1.55 16 22 O -0.26 -3.84 9.60 -49.14 -0.47 -4.31 16 23 C 0.01 0.12 7.15 37.27 0.27 0.38 16 24 C 0.02 0.14 7.13 37.27 0.27 0.41 16 25 O -0.29 -3.26 10.77 -35.40 -0.38 -3.64 16 26 C 0.12 2.74 6.93 -2.53 -0.02 2.72 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 1.15 7.38 -51.92 -0.38 0.77 16 29 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.40 6.81 7.60 -40.82 -0.31 6.50 16 33 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -34.21 337.59 -9.16 -43.37 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.83 Total: 2.26 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.69 Total: 5.94 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.29 Total: -54.86 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.04 Total: -19.33 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.38 Total: 0.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.21 -9.16 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015936768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.646 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds