Wall clock time and date at job start Tue Mar 31 2020 14:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48496 * 109.47285 * 270.00301 * 3 2 1 5 5 H 1.48495 * 109.46993 * 30.00622 * 3 2 1 6 6 H 1.48502 * 109.46775 * 150.00362 * 3 2 1 7 7 C 1.38813 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99779 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99901 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.77795 * 36.78924 * 10 9 7 12 12 C 1.55397 * 110.85331 * 160.08686 * 10 9 7 13 13 C 1.54907 * 101.66531 * 153.70170 * 12 10 9 14 14 N 1.47422 * 104.83197 * 323.07728 * 13 12 10 15 15 C 1.34777 * 125.64506 * 204.08702 * 14 13 12 16 16 O 1.21779 * 120.00131 * 355.33028 * 15 14 13 17 17 C 1.41716 * 119.99652 * 175.31997 * 15 14 13 18 18 S 1.75654 * 125.10316 * 5.92054 * 17 15 14 19 19 C 1.75556 * 91.21203 * 179.97438 * 18 17 15 20 20 C 1.34200 * 110.67895 * 359.97438 * 19 18 17 21 21 C 1.37154 * 125.10138 * 185.61887 * 17 15 14 22 22 O 1.37658 * 124.47962 * 0.86447 * 21 17 15 23 23 C 1.43381 * 114.57549 * 162.89174 * 22 21 17 24 24 C 1.53215 * 109.14383 * 46.25907 * 23 22 21 25 25 O 1.38253 * 124.14295 * 180.13913 * 20 19 18 26 26 C 1.47019 * 108.70334 * 24.12815 * 14 13 12 27 27 H 0.96996 * 119.99695 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00176 * 0.02562 * 9 7 2 29 29 H 1.09000 * 110.88890 * 35.63258 * 12 10 9 30 30 H 1.09001 * 111.07352 * 271.85511 * 12 10 9 31 31 H 1.09000 * 110.36693 * 204.23279 * 13 12 10 32 32 H 1.09004 * 110.45929 * 81.96356 * 13 12 10 33 33 H 1.08004 * 124.65911 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.52578 * 286.35072 * 23 22 21 35 35 H 1.09008 * 109.52130 * 166.15397 * 23 22 21 36 36 H 1.08999 * 109.52843 * 177.84120 * 24 23 22 37 37 H 1.09001 * 109.52047 * 57.64646 * 24 23 22 38 38 H 1.09000 * 109.87986 * 118.36310 * 26 14 13 39 39 H 1.09001 * 109.88119 * 239.36609 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4704 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1123 -2.4708 -0.0011 11 1 3.5986 -3.2139 -0.6110 12 6 5.5711 -2.2673 -0.4963 13 6 6.3050 -3.4399 0.2009 14 7 5.6625 -3.5547 1.5227 15 6 6.2233 -4.0911 2.6247 16 8 7.3230 -4.6098 2.5573 17 6 5.5331 -4.0513 3.8618 18 16 3.8893 -3.4732 4.0833 19 6 3.9641 -3.8074 5.8051 20 6 5.1605 -4.3166 6.1375 21 6 6.0465 -4.4638 5.0649 22 8 7.3180 -4.9613 5.2402 23 6 7.7738 -4.9673 6.5996 24 6 6.6692 -5.5343 7.4974 25 8 5.5183 -4.6825 7.4218 26 6 4.3084 -2.9881 1.4395 27 1 -0.4849 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 5.9642 -1.3069 -0.1629 30 1 5.6330 -2.3571 -1.5808 31 1 7.3648 -3.2112 0.3127 32 1 6.1744 -4.3619 -0.3658 33 1 3.1580 -3.6280 6.5012 34 1 8.0087 -3.9491 6.9096 35 1 8.6654 -5.5892 6.6821 36 1 7.0232 -5.5775 8.5274 37 1 6.4041 -6.5362 7.1600 38 1 3.5699 -3.7587 1.6606 39 1 4.2072 -2.1644 2.1462 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019599700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:26 Heat of formation + Delta-G solvation = -37.997141 kcal Electronic energy + Delta-G solvation = -25335.227324 eV Core-core repulsion = 21564.553165 eV Total energy + Delta-G solvation = -3770.674159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15450 -39.79999 -37.55454 -37.02861 -35.61569 -34.22478 -31.82851 -30.79558 -30.02607 -29.15590 -27.87606 -25.28218 -23.89551 -23.65512 -22.27865 -20.52869 -20.36410 -19.39201 -18.46269 -17.72589 -17.22982 -17.02283 -16.35760 -16.25035 -15.60948 -15.06793 -14.94227 -14.67184 -14.49421 -14.36036 -13.97514 -13.68708 -13.25794 -13.22633 -12.98377 -12.76607 -12.50804 -12.31519 -11.92458 -11.53786 -11.33633 -11.15439 -11.05502 -10.94881 -10.85925 -10.68394 -10.52401 -10.14926 -9.84980 -9.69795 -9.09014 -8.72828 -8.43116 -7.93308 -7.46971 -5.89338 -3.28057 0.38105 1.38000 1.62986 2.10126 3.05584 3.09010 3.30128 3.32931 3.34308 3.37781 3.39552 3.93256 4.33065 4.48260 4.57753 4.61035 4.75539 4.98454 5.01838 5.09136 5.16870 5.20860 5.26479 5.41037 5.44954 5.49644 5.62039 5.81085 5.83753 5.92098 6.00643 6.15630 6.28508 6.41704 6.50955 6.64718 6.92850 7.66010 7.84535 8.29039 8.30758 9.05267 9.77472 9.95075 11.27983 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003822 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.749072 B = 7324.628715 C = 8394.514940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.094 0.906 9 N -0.736 5.736 10 C 0.185 3.815 11 H 0.079 0.921 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.615 5.615 15 C 0.604 3.396 16 O -0.532 6.532 17 C -0.283 4.283 18 S 0.269 5.731 19 C -0.236 4.236 20 C 0.025 3.975 21 C 0.122 3.878 22 O -0.263 6.263 23 C 0.013 3.987 24 C 0.018 3.982 25 O -0.295 6.295 26 C 0.056 3.944 27 H 0.261 0.739 28 H 0.365 0.635 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.040 -9.604 11.958 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.184 4.184 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.112 0.888 9 N -0.378 5.378 10 C 0.073 3.927 11 H 0.097 0.903 12 C -0.183 4.183 13 C -0.008 4.008 14 N -0.349 5.349 15 C 0.394 3.606 16 O -0.412 6.412 17 C -0.403 4.403 18 S 0.535 5.465 19 C -0.373 4.373 20 C -0.031 4.031 21 C 0.060 3.940 22 O -0.176 6.176 23 C -0.064 4.064 24 C -0.058 4.058 25 O -0.210 6.210 26 C -0.071 4.071 27 H 0.072 0.928 28 H 0.199 0.801 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.195 0.805 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.287 -9.379 11.058 19.006 hybrid contribution 1.566 0.621 1.408 2.195 sum 13.853 -8.759 12.466 20.592 Atomic orbital electron populations 1.69694 1.05130 1.26087 1.56408 1.24671 0.95193 0.97236 1.01315 0.86612 0.79317 0.85009 0.77955 1.20891 1.21588 1.20195 1.19069 0.80198 0.94936 1.44370 0.88830 1.42751 1.04245 1.01513 1.89244 1.21127 0.90734 0.89955 0.90885 0.90333 1.23164 0.96322 0.98061 1.00776 1.22145 0.97637 0.98496 0.82515 1.48396 1.16752 1.59824 1.09944 1.15172 0.85083 0.78812 0.81517 1.90848 1.20064 1.45114 1.85136 1.22576 1.02555 1.18360 0.96849 1.85376 1.06185 1.58902 0.95996 1.25635 0.99457 1.08473 1.03730 1.18194 0.93813 1.06230 0.84853 1.18791 0.85944 0.97325 0.91949 1.87162 1.25806 1.78037 1.26591 1.23694 0.98008 1.03300 0.81356 1.23584 0.85622 0.93960 1.02622 1.87053 1.46521 1.65849 1.21620 1.23433 0.81704 0.98611 1.03399 0.92841 0.80127 0.90698 0.89461 0.90655 0.91257 0.80508 0.90454 0.85877 0.86042 0.90544 0.91134 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.97 55.49 0.78 -26.71 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 20.78 27.74 -169.99 -4.71 16.07 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 7 C -0.26 -6.60 10.46 -15.06 -0.16 -6.76 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.74 -15.71 4.98 -51.52 -0.26 -15.96 16 10 C 0.19 3.18 3.60 -65.97 -0.24 2.94 16 11 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 12 C -0.14 -2.02 6.71 -24.45 -0.16 -2.19 16 13 C 0.11 1.62 6.89 -2.53 -0.02 1.60 16 14 N -0.61 -10.00 3.33 -173.89 -0.58 -10.58 16 15 C 0.60 10.80 7.63 -14.93 -0.11 10.69 16 16 O -0.53 -10.82 16.17 -11.69 -0.19 -11.01 16 17 C -0.28 -4.60 6.20 -38.65 -0.24 -4.84 16 18 S 0.27 3.77 18.35 -107.50 -1.97 1.80 16 19 C -0.24 -2.99 11.17 29.31 0.33 -2.66 16 20 C 0.02 0.34 6.55 -40.38 -0.26 0.08 16 21 C 0.12 1.88 6.57 -39.35 -0.26 1.62 16 22 O -0.26 -3.93 9.62 -49.03 -0.47 -4.40 16 23 C 0.01 0.12 7.14 37.27 0.27 0.39 16 24 C 0.02 0.16 7.14 37.27 0.27 0.42 16 25 O -0.29 -3.55 10.77 -35.43 -0.38 -3.94 16 26 C 0.06 0.93 4.88 -3.07 -0.01 0.91 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.37 7.73 5.58 -40.82 -0.23 7.50 16 29 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.18 1.81 8.06 -52.48 -0.42 1.38 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.14 7.04 -51.93 -0.37 0.77 16 39 H 0.08 1.43 6.48 -50.62 -0.33 1.11 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -33.34 332.69 -8.21 -41.55 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.73 Total: 5.71 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.70 Total: 2.45 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.06 Total: -53.25 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.04 Total: -19.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.71 Total: 16.07 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.97 Total: 1.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.34 -8.21 -41.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019599700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.554 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds