Wall clock time and date at job start Tue Mar 31 2020 14:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48496 * 109.47285 * 270.00301 * 3 2 1 5 5 H 1.48495 * 109.46993 * 30.00622 * 3 2 1 6 6 H 1.48502 * 109.46775 * 150.00362 * 3 2 1 7 7 C 1.38813 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99779 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99901 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.77795 * 36.78924 * 10 9 7 12 12 C 1.55397 * 110.85331 * 160.08686 * 10 9 7 13 13 C 1.54907 * 101.66531 * 153.70170 * 12 10 9 14 14 N 1.47422 * 104.83197 * 323.07728 * 13 12 10 15 15 C 1.34777 * 125.64506 * 204.08702 * 14 13 12 16 16 O 1.21779 * 120.00131 * 355.33028 * 15 14 13 17 17 C 1.41716 * 119.99652 * 175.31997 * 15 14 13 18 18 S 1.75654 * 125.10316 * 5.92054 * 17 15 14 19 19 C 1.75556 * 91.21203 * 179.97438 * 18 17 15 20 20 C 1.34200 * 110.67895 * 359.97438 * 19 18 17 21 21 C 1.37154 * 125.10138 * 185.61887 * 17 15 14 22 22 O 1.37658 * 124.47962 * 0.86447 * 21 17 15 23 23 C 1.43381 * 114.57549 * 162.89174 * 22 21 17 24 24 C 1.53215 * 109.14383 * 46.25907 * 23 22 21 25 25 O 1.38253 * 124.14295 * 180.13913 * 20 19 18 26 26 C 1.47019 * 108.70334 * 24.12815 * 14 13 12 27 27 H 0.96996 * 119.99695 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00176 * 0.02562 * 9 7 2 29 29 H 1.09000 * 110.88890 * 35.63258 * 12 10 9 30 30 H 1.09001 * 111.07352 * 271.85511 * 12 10 9 31 31 H 1.09000 * 110.36693 * 204.23279 * 13 12 10 32 32 H 1.09004 * 110.45929 * 81.96356 * 13 12 10 33 33 H 1.08004 * 124.65911 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.52578 * 286.35072 * 23 22 21 35 35 H 1.09008 * 109.52130 * 166.15397 * 23 22 21 36 36 H 1.08999 * 109.52843 * 177.84120 * 24 23 22 37 37 H 1.09001 * 109.52047 * 57.64646 * 24 23 22 38 38 H 1.09000 * 109.87986 * 118.36310 * 26 14 13 39 39 H 1.09001 * 109.88119 * 239.36609 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4704 -2.1375 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1123 -2.4708 -0.0011 11 1 3.5986 -3.2139 -0.6110 12 6 5.5711 -2.2673 -0.4963 13 6 6.3050 -3.4399 0.2009 14 7 5.6625 -3.5547 1.5227 15 6 6.2233 -4.0911 2.6247 16 8 7.3230 -4.6098 2.5573 17 6 5.5331 -4.0513 3.8618 18 16 3.8893 -3.4732 4.0833 19 6 3.9641 -3.8074 5.8051 20 6 5.1605 -4.3166 6.1375 21 6 6.0465 -4.4638 5.0649 22 8 7.3180 -4.9613 5.2402 23 6 7.7738 -4.9673 6.5996 24 6 6.6692 -5.5343 7.4974 25 8 5.5183 -4.6825 7.4218 26 6 4.3084 -2.9881 1.4395 27 1 -0.4849 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 5.9642 -1.3069 -0.1629 30 1 5.6330 -2.3571 -1.5808 31 1 7.3648 -3.2112 0.3127 32 1 6.1744 -4.3619 -0.3658 33 1 3.1580 -3.6280 6.5012 34 1 8.0087 -3.9491 6.9096 35 1 8.6654 -5.5892 6.6821 36 1 7.0232 -5.5775 8.5274 37 1 6.4041 -6.5362 7.1600 38 1 3.5699 -3.7587 1.6606 39 1 4.2072 -2.1644 2.1462 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019599700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:24 Heat of formation + Delta-G solvation = -61.375446 kcal Electronic energy + Delta-G solvation = -25336.241083 eV Core-core repulsion = 21564.553165 eV Total energy + Delta-G solvation = -3771.687918 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14414 -41.08063 -38.86787 -38.05352 -36.65897 -35.94316 -33.56118 -32.22789 -30.81179 -30.36642 -29.31037 -26.49607 -25.31319 -24.74591 -23.57790 -21.98485 -21.49806 -20.40965 -19.69085 -19.47220 -18.31846 -18.12604 -17.56618 -17.37031 -16.80576 -16.45359 -16.01161 -15.83896 -15.67559 -15.51362 -15.39384 -14.95492 -14.73557 -14.44597 -14.21354 -14.01265 -13.84908 -13.63389 -13.38013 -12.93667 -12.69994 -12.37854 -12.20857 -12.13443 -12.06984 -11.91919 -11.79462 -11.76630 -11.58414 -11.22009 -10.96083 -9.94882 -9.58755 -9.36592 -9.02976 -7.97969 -5.33788 -0.74582 0.28236 0.58462 1.03035 1.44172 1.45552 1.52511 1.86235 1.97809 2.21299 2.45463 2.52387 3.01514 3.30861 3.39936 3.55457 3.68143 3.80822 3.91251 3.94762 4.01793 4.21340 4.27513 4.28161 4.39253 4.46725 4.49692 4.57452 4.66847 4.79117 4.84663 4.92979 5.08960 5.18901 5.34596 5.58927 5.82153 5.96987 6.24841 6.34624 6.98112 7.10192 7.83303 8.02108 9.22531 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003822 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.749072 B = 7324.628715 C = 8394.514940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.054 4.054 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.176 3.824 11 H 0.079 0.921 12 C -0.129 4.129 13 C 0.113 3.887 14 N -0.614 5.614 15 C 0.601 3.399 16 O -0.566 6.566 17 C -0.319 4.319 18 S 0.263 5.737 19 C -0.219 4.219 20 C 0.017 3.983 21 C 0.124 3.876 22 O -0.291 6.291 23 C 0.003 3.997 24 C 0.015 3.985 25 O -0.302 6.302 26 C 0.066 3.934 27 H 0.257 0.743 28 H 0.369 0.631 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.204 0.796 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.862 -9.689 13.114 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.246 4.246 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.176 1.176 7 C -0.362 4.362 8 H 0.085 0.915 9 N -0.380 5.380 10 C 0.066 3.934 11 H 0.097 0.903 12 C -0.167 4.167 13 C -0.009 4.009 14 N -0.348 5.348 15 C 0.393 3.607 16 O -0.448 6.448 17 C -0.439 4.439 18 S 0.528 5.472 19 C -0.356 4.356 20 C -0.039 4.039 21 C 0.061 3.939 22 O -0.205 6.205 23 C -0.072 4.072 24 C -0.060 4.060 25 O -0.218 6.218 26 C -0.061 4.061 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.099 0.901 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.174 -9.494 12.210 20.979 hybrid contribution 1.072 0.476 1.168 1.655 sum 15.245 -9.018 13.379 22.198 Atomic orbital electron populations 1.69862 1.07061 1.26601 1.59310 1.25388 0.95886 1.00846 1.02466 0.85572 0.78812 0.80317 0.78047 1.20542 1.22760 1.17587 1.19030 0.82100 0.93683 1.41425 0.91513 1.42692 1.02717 1.03246 1.89336 1.21322 0.92380 0.88311 0.91392 0.90292 1.23104 0.93347 0.98090 1.02201 1.22308 0.97753 0.99247 0.81623 1.48423 1.16581 1.59264 1.10492 1.15396 0.84775 0.78333 0.82210 1.90810 1.21454 1.46835 1.85742 1.22574 1.03756 1.20752 0.96771 1.85277 1.05199 1.59225 0.97458 1.25881 0.99872 1.06823 1.03048 1.18232 0.93758 1.06578 0.85293 1.19070 0.86481 0.96171 0.92212 1.87118 1.25644 1.77697 1.30018 1.24105 0.99393 1.04494 0.79165 1.23918 0.84107 0.93237 1.04730 1.87045 1.47945 1.66471 1.20349 1.23170 0.82049 0.98400 1.02515 0.93381 0.79709 0.90465 0.87007 0.90236 0.89819 0.77922 0.90050 0.82761 0.81981 0.90266 0.91073 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.38 13.97 21.65 0.30 -59.08 16 2 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 3 Si 0.94 42.63 27.74 68.60 1.90 44.54 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 7 C -0.23 -11.95 10.46 84.03 0.88 -11.07 16 8 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 9 N -0.74 -30.52 4.98 -316.93 -1.58 -32.10 16 10 C 0.18 5.82 3.60 46.26 0.17 5.99 16 11 H 0.08 2.63 8.12 -2.38 -0.02 2.61 16 12 C -0.13 -3.30 6.71 32.07 0.22 -3.08 16 13 C 0.11 2.98 6.89 86.85 0.60 3.58 16 14 N -0.61 -19.56 3.33 -822.25 -2.73 -22.30 16 15 C 0.60 21.53 7.63 85.10 0.65 22.18 16 16 O -0.57 -23.18 16.17 11.47 0.19 -22.99 16 17 C -0.32 -10.37 6.20 22.87 0.14 -10.22 16 18 S 0.26 7.27 18.35 -56.49 -1.04 6.23 16 19 C -0.22 -5.23 11.17 66.90 0.75 -4.48 16 20 C 0.02 0.44 6.55 21.75 0.14 0.58 16 21 C 0.12 3.76 6.57 22.42 0.15 3.91 16 22 O -0.29 -8.52 9.62 -90.70 -0.87 -9.39 16 23 C 0.00 0.06 7.14 72.05 0.51 0.57 16 24 C 0.02 0.22 7.14 72.05 0.51 0.73 16 25 O -0.30 -6.61 10.77 -113.13 -1.22 -7.83 16 26 C 0.07 2.14 4.88 86.73 0.42 2.56 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.37 14.77 5.58 -92.71 -0.52 14.25 16 29 H 0.08 1.98 8.01 -2.39 -0.02 1.96 16 30 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 2.29 7.04 -2.39 -0.02 2.27 16 39 H 0.07 2.54 6.48 -3.22 -0.02 2.52 16 Total: -1.00 -73.40 332.69 1.07 -72.33 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.52 Total: 21.83 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.61 Total: 8.75 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.01 Total: -113.47 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.90 Total: -40.20 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.90 Total: 44.54 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.04 Total: 6.23 kcal Total: -73.40 1.07 -72.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019599700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds