Wall clock time and date at job start Tue Mar 31 2020 13:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00590 * 2 1 4 4 H 1.48503 * 109.47147 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.46587 * 29.99459 * 3 2 1 6 6 H 1.48500 * 109.47624 * 149.99459 * 3 2 1 7 7 C 1.38815 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47868 * 126.94448 * 359.96687 * 9 7 2 11 11 C 1.56022 * 105.10235 * 182.04378 * 10 9 7 12 12 H 1.08998 * 116.24545 * 158.83908 * 11 10 9 13 13 C 1.57076 * 99.60831 * 32.80481 * 11 10 9 14 14 C 1.49296 * 126.94357 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15191 * 15.79914 * 14 9 7 16 16 C 1.56021 * 104.08932 * 246.65791 * 14 9 7 17 17 N 1.49287 * 104.09133 * 287.91935 * 11 10 9 18 18 C 1.34780 * 126.94672 * 247.56052 * 17 11 10 19 19 O 1.21577 * 119.99713 * 354.74199 * 18 17 11 20 20 C 1.47633 * 119.99801 * 174.73802 * 18 17 11 21 21 C 1.39697 * 120.15822 * 319.24851 * 20 18 17 22 22 C 1.37790 * 119.89456 * 179.97438 * 21 20 18 23 23 C 1.38620 * 120.20387 * 0.03212 * 22 21 20 24 24 Cl 1.73595 * 119.84392 * 179.97438 * 23 22 21 25 25 C 1.38353 * 120.31039 * 359.97438 * 23 22 21 26 26 C 1.38259 * 120.10482 * 359.70776 * 25 23 22 27 27 F 1.35100 * 120.10697 * 180.29328 * 26 25 23 28 28 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.31523 * 63.13458 * 10 9 7 30 30 H 1.09004 * 110.40116 * 300.98925 * 10 9 7 31 31 H 1.09001 * 112.36707 * 64.27778 * 13 11 10 32 32 H 1.09002 * 112.37181 * 191.71621 * 13 11 10 33 33 H 1.09000 * 110.31586 * 47.67025 * 16 14 9 34 34 H 1.08995 * 110.31536 * 169.76079 * 16 14 9 35 35 H 1.07999 * 120.05175 * 359.96281 * 21 20 18 36 36 H 1.07999 * 119.89785 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.94850 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1424 -2.5668 0.0007 11 6 -0.3640 -4.1102 0.0543 12 1 -1.3364 -4.4453 0.4152 13 6 0.8838 -4.5245 0.9138 14 6 1.9101 -3.7618 0.0016 15 1 2.9642 -3.8351 0.2688 16 6 1.5082 -4.3467 -1.3879 17 7 0.0312 -4.5817 -1.3059 18 6 -0.7783 -5.1008 -2.2503 19 8 -1.9486 -5.3128 -1.9981 20 6 -0.2439 -5.4118 -3.5909 21 6 0.6519 -4.5366 -4.2097 22 6 1.1478 -4.8325 -5.4608 23 6 0.7599 -5.9956 -6.1074 24 17 1.3898 -6.3589 -7.6837 25 6 -0.1270 -6.8684 -5.5025 26 6 -0.6273 -6.5873 -4.2446 27 9 -1.4888 -7.4424 -3.6513 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5740 -2.1539 -0.9111 30 1 -0.5831 -2.0906 0.8766 31 1 0.8449 -4.1178 1.9244 32 1 1.0490 -5.6020 0.9129 33 1 1.7269 -3.6287 -2.1783 34 1 2.0354 -5.2828 -1.5712 35 1 0.9552 -3.6293 -3.7084 36 1 1.8400 -4.1557 -5.9394 37 1 -0.4256 -7.7727 -6.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032506116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:06 Heat of formation + Delta-G solvation = 7.389592 kcal Electronic energy + Delta-G solvation = -25256.317608 eV Core-core repulsion = 21362.107555 eV Total energy + Delta-G solvation = -3894.210054 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.03728 -40.33691 -39.10557 -37.71508 -36.68437 -33.69827 -32.10331 -31.00817 -30.69037 -28.98157 -28.61714 -25.37023 -24.53692 -23.19577 -23.02933 -20.86235 -19.92900 -18.92449 -17.91979 -17.53732 -16.85874 -16.51448 -15.99960 -15.65027 -15.53471 -15.13458 -14.56897 -14.28256 -13.98878 -13.68932 -13.51555 -13.42525 -13.16694 -12.65832 -12.29373 -12.05982 -11.84142 -11.64439 -11.56011 -11.38971 -11.28344 -11.07396 -10.91543 -10.81010 -10.67348 -10.31898 -10.13477 -9.72876 -9.69081 -9.29941 -8.95078 -8.78107 -8.12591 -7.01027 -5.83635 -3.18805 0.44373 0.83039 1.66733 2.73412 3.12088 3.32566 3.37836 3.40479 3.41259 3.96690 4.35403 4.39720 4.45473 4.65206 4.87335 4.97938 5.09814 5.19762 5.28374 5.47512 5.49970 5.55983 5.67565 5.70374 5.76378 5.83527 5.87878 6.10023 6.19381 6.31697 6.33026 6.43310 6.51132 6.58824 7.35101 7.39583 7.64689 7.90305 8.02494 8.38643 9.03029 9.64021 10.32471 11.28330 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.003870 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.247357 B = 7232.759644 C = 8409.383126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.098 3.902 12 H 0.114 0.886 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.109 0.891 16 C 0.080 3.920 17 N -0.601 5.601 18 C 0.573 3.427 19 O -0.537 6.537 20 C -0.148 4.148 21 C -0.044 4.044 22 C -0.125 4.125 23 C 0.007 3.993 24 Cl -0.057 7.057 25 C -0.157 4.157 26 C 0.160 3.840 27 F -0.116 7.116 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -12.980 -9.584 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.005 4.005 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.127 0.873 16 C -0.044 4.044 17 N -0.334 5.334 18 C 0.360 3.640 19 O -0.416 6.416 20 C -0.152 4.152 21 C -0.062 4.062 22 C -0.144 4.144 23 C -0.020 4.020 24 Cl -0.027 7.027 25 C -0.177 4.177 26 C 0.139 3.861 27 F -0.094 7.094 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.444 -12.886 -9.624 16.448 hybrid contribution 0.288 0.766 -0.253 0.856 sum 3.732 -12.120 -9.877 16.074 Atomic orbital electron populations 1.69908 1.04972 1.25431 1.56162 1.24818 0.95660 0.97732 1.01867 0.86126 0.78604 0.83430 0.77585 1.21584 1.21660 1.20604 1.19044 0.90413 0.81999 1.44770 0.90085 1.45264 1.01298 0.99282 1.86300 1.21951 0.84733 0.86981 1.01477 1.24375 0.98105 0.97671 0.80304 0.86791 1.24148 0.96511 0.99035 0.99277 1.23184 0.96679 0.86293 0.90644 0.87305 1.23859 0.79019 0.99199 1.02361 1.49537 1.09347 1.59670 1.14871 1.17421 0.85403 0.78081 0.83056 1.90806 1.16185 1.54012 1.80595 1.20254 1.01645 0.96034 0.97273 1.21501 0.92108 0.98866 0.93773 1.21095 1.01871 0.96270 0.95144 1.20774 0.97313 0.95837 0.88090 1.98392 1.85603 1.94503 1.24247 1.20865 1.00273 1.02127 0.94437 1.17377 0.89991 0.87810 0.90885 1.91587 1.66523 1.68127 1.83192 0.93501 0.93413 0.92410 0.89539 0.91553 0.90626 0.92396 0.82573 0.83533 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.56 55.49 0.59 -25.25 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.23 -5.92 10.37 -15.06 -0.16 -6.08 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.60 -13.54 3.02 -156.34 -0.47 -14.02 16 10 C 0.17 3.98 4.76 -1.67 -0.01 3.98 16 11 C 0.10 1.83 5.20 -62.55 -0.33 1.51 16 12 H 0.11 2.11 8.04 -51.93 -0.42 1.69 16 13 C -0.15 -2.43 6.82 -22.31 -0.15 -2.58 16 14 C 0.14 2.44 5.53 -62.55 -0.35 2.09 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C 0.08 1.27 5.36 -0.60 0.00 1.26 16 17 N -0.60 -10.78 3.01 -156.39 -0.47 -11.25 16 18 C 0.57 10.70 7.34 -12.42 -0.09 10.61 16 19 O -0.54 -11.79 16.66 5.30 0.09 -11.70 16 20 C -0.15 -2.26 5.53 -104.91 -0.58 -2.84 16 21 C -0.04 -0.57 8.57 -39.20 -0.34 -0.90 16 22 C -0.13 -1.33 9.81 -39.60 -0.39 -1.72 16 23 C 0.01 0.07 6.32 -39.40 -0.25 -0.18 16 24 Cl -0.06 -0.52 28.94 -51.86 -1.50 -2.02 16 25 C -0.16 -1.75 9.79 -39.53 -0.39 -2.14 16 26 C 0.16 2.25 7.24 -38.96 -0.28 1.97 16 27 F -0.12 -1.82 16.28 2.25 0.04 -1.79 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.26 7.67 -51.93 -0.40 0.86 16 30 H 0.06 1.47 7.46 -51.93 -0.39 1.09 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.23 5.86 -51.93 -0.30 0.93 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.16 2.11 5.84 -52.49 -0.31 1.80 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -30.31 327.17 -9.12 -39.43 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.90 Total: 0.96 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -3.40 Total: 4.79 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.36 Total: -50.52 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.31 -9.12 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032506116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.818 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds