Wall clock time and date at job start Tue Mar 31 2020 13:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00590 * 2 1 4 4 H 1.48503 * 109.47147 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.46587 * 29.99459 * 3 2 1 6 6 H 1.48500 * 109.47624 * 149.99459 * 3 2 1 7 7 C 1.38815 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00122 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47868 * 126.94448 * 359.96687 * 9 7 2 11 11 C 1.56022 * 105.10235 * 182.04378 * 10 9 7 12 12 H 1.08998 * 116.24545 * 158.83908 * 11 10 9 13 13 C 1.57076 * 99.60831 * 32.80481 * 11 10 9 14 14 C 1.49296 * 126.94357 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15191 * 15.79914 * 14 9 7 16 16 C 1.56021 * 104.08932 * 246.65791 * 14 9 7 17 17 N 1.49287 * 104.09133 * 287.91935 * 11 10 9 18 18 C 1.34780 * 126.94672 * 247.56052 * 17 11 10 19 19 O 1.21577 * 119.99713 * 354.74199 * 18 17 11 20 20 C 1.47633 * 119.99801 * 174.73802 * 18 17 11 21 21 C 1.39697 * 120.15822 * 319.24851 * 20 18 17 22 22 C 1.37790 * 119.89456 * 179.97438 * 21 20 18 23 23 C 1.38620 * 120.20387 * 0.03212 * 22 21 20 24 24 Cl 1.73595 * 119.84392 * 179.97438 * 23 22 21 25 25 C 1.38353 * 120.31039 * 359.97438 * 23 22 21 26 26 C 1.38259 * 120.10482 * 359.70776 * 25 23 22 27 27 F 1.35100 * 120.10697 * 180.29328 * 26 25 23 28 28 H 0.97003 * 119.99793 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.31523 * 63.13458 * 10 9 7 30 30 H 1.09004 * 110.40116 * 300.98925 * 10 9 7 31 31 H 1.09001 * 112.36707 * 64.27778 * 13 11 10 32 32 H 1.09002 * 112.37181 * 191.71621 * 13 11 10 33 33 H 1.09000 * 110.31586 * 47.67025 * 16 14 9 34 34 H 1.08995 * 110.31536 * 169.76079 * 16 14 9 35 35 H 1.07999 * 120.05175 * 359.96281 * 21 20 18 36 36 H 1.07999 * 119.89785 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.94850 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1424 -2.5668 0.0007 11 6 -0.3640 -4.1102 0.0543 12 1 -1.3364 -4.4453 0.4152 13 6 0.8838 -4.5245 0.9138 14 6 1.9101 -3.7618 0.0016 15 1 2.9642 -3.8351 0.2688 16 6 1.5082 -4.3467 -1.3879 17 7 0.0312 -4.5817 -1.3059 18 6 -0.7783 -5.1008 -2.2503 19 8 -1.9486 -5.3128 -1.9981 20 6 -0.2439 -5.4118 -3.5909 21 6 0.6519 -4.5366 -4.2097 22 6 1.1478 -4.8325 -5.4608 23 6 0.7599 -5.9956 -6.1074 24 17 1.3898 -6.3589 -7.6837 25 6 -0.1270 -6.8684 -5.5025 26 6 -0.6273 -6.5873 -4.2446 27 9 -1.4888 -7.4424 -3.6513 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5740 -2.1539 -0.9111 30 1 -0.5831 -2.0906 0.8766 31 1 0.8449 -4.1178 1.9244 32 1 1.0490 -5.6020 0.9129 33 1 1.7269 -3.6287 -2.1783 34 1 2.0354 -5.2828 -1.5712 35 1 0.9552 -3.6293 -3.7084 36 1 1.8400 -4.1557 -5.9394 37 1 -0.4256 -7.7727 -6.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032506116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:05 Heat of formation + Delta-G solvation = -9.664330 kcal Electronic energy + Delta-G solvation = -25257.057122 eV Core-core repulsion = 21362.107555 eV Total energy + Delta-G solvation = -3894.949567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.15026 -41.73615 -40.26322 -39.10430 -37.55120 -35.45018 -33.60094 -32.24220 -31.77485 -30.49716 -30.25711 -27.00783 -25.96486 -24.51583 -24.11849 -22.27240 -21.43115 -20.39831 -19.26773 -18.76063 -18.14220 -17.93934 -17.32783 -16.98788 -16.75151 -16.37371 -16.10583 -15.76975 -15.35689 -15.03929 -14.71240 -14.64472 -14.32587 -13.89651 -13.73204 -13.50013 -13.37766 -13.09496 -12.85889 -12.74807 -12.65678 -12.51000 -12.27994 -12.16777 -12.12558 -12.01705 -11.83246 -11.51429 -11.19579 -10.72242 -10.24704 -9.96309 -9.60577 -8.90741 -7.82612 -5.18445 -0.58267 -0.11396 0.82194 1.48421 1.50140 1.50937 1.59591 1.77391 2.28364 2.50460 2.95313 3.19963 3.35590 3.40495 3.49402 3.75033 3.79216 3.86874 3.90650 4.00866 4.18773 4.24591 4.47635 4.57066 4.60827 4.74179 4.80445 4.88276 4.91335 4.94924 5.00015 5.12699 5.22552 5.40397 5.46408 5.51010 5.67098 6.10532 6.48501 6.94481 7.04438 7.72702 8.42765 9.28648 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.003870 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.247357 B = 7232.759644 C = 8409.383126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.228 4.228 8 H 0.098 0.902 9 N -0.615 5.615 10 C 0.189 3.811 11 C 0.098 3.902 12 H 0.110 0.890 13 C -0.129 4.129 14 C 0.138 3.862 15 H 0.141 0.859 16 C 0.087 3.913 17 N -0.602 5.602 18 C 0.566 3.434 19 O -0.583 6.583 20 C -0.168 4.168 21 C -0.044 4.044 22 C -0.110 4.110 23 C 0.014 3.986 24 Cl -0.035 7.035 25 C -0.143 4.143 26 C 0.145 3.855 27 F -0.131 7.131 28 H 0.243 0.757 29 H 0.000 1.000 30 H 0.019 0.981 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -14.745 -11.206 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.187 1.187 7 C -0.356 4.356 8 H 0.116 0.884 9 N -0.339 5.339 10 C 0.063 3.937 11 C -0.006 4.006 12 H 0.128 0.872 13 C -0.169 4.169 14 C 0.031 3.969 15 H 0.158 0.842 16 C -0.036 4.036 17 N -0.334 5.334 18 C 0.356 3.644 19 O -0.465 6.465 20 C -0.172 4.172 21 C -0.063 4.063 22 C -0.129 4.129 23 C -0.013 4.013 24 Cl -0.006 7.006 25 C -0.162 4.162 26 C 0.124 3.876 27 F -0.110 7.110 28 H 0.052 0.948 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.165 0.835 36 H 0.191 0.809 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.556 -14.695 -11.253 19.635 hybrid contribution -0.608 1.254 0.150 1.402 sum 5.948 -13.440 -11.103 18.420 Atomic orbital electron populations 1.70150 1.06632 1.25107 1.58771 1.25613 0.96277 1.01049 1.03131 0.85130 0.77815 0.79430 0.77255 1.21621 1.23231 1.18706 1.19540 0.91315 0.82894 1.41893 0.88385 1.45493 1.01264 1.01049 1.86096 1.21514 0.85172 0.89609 0.97428 1.24205 0.99598 0.94614 0.82134 0.87205 1.24058 0.93723 1.00818 0.98263 1.23600 0.98339 0.83203 0.91709 0.84159 1.23832 0.77798 1.00937 1.01064 1.49604 1.10375 1.59139 1.14331 1.18010 0.84894 0.77258 0.84241 1.90765 1.18064 1.56000 1.81624 1.20054 1.03563 0.97660 0.95926 1.21381 0.92054 0.98125 0.94712 1.21319 1.01198 0.96456 0.93903 1.20859 0.96443 0.95307 0.88717 1.98412 1.85168 1.94341 1.22640 1.21059 0.99271 1.02844 0.93014 1.17572 0.90519 0.87577 0.91934 1.91546 1.67219 1.68527 1.83685 0.94777 0.98156 0.96267 0.89775 0.88187 0.91107 0.88425 0.83482 0.80906 0.80780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.69 10.56 21.65 0.23 -56.46 16 2 C -0.07 -3.67 5.49 84.86 0.47 -3.20 16 3 Si 0.97 43.61 29.55 68.60 2.03 45.64 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.23 -11.43 10.37 84.03 0.87 -10.56 16 8 H 0.10 4.50 7.83 -2.91 -0.02 4.47 16 9 N -0.61 -27.88 3.02 -648.53 -1.96 -29.84 16 10 C 0.19 9.12 4.76 87.16 0.41 9.53 16 11 C 0.10 3.74 5.20 46.93 0.24 3.98 16 12 H 0.11 4.26 8.04 -2.39 -0.02 4.25 16 13 C -0.13 -3.93 6.82 33.46 0.23 -3.71 16 14 C 0.14 4.44 5.53 46.93 0.26 4.70 16 15 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 16 C 0.09 2.55 5.36 86.79 0.47 3.01 16 17 N -0.60 -21.54 3.01 -766.98 -2.31 -23.85 16 18 C 0.57 21.56 7.34 86.72 0.64 22.19 16 19 O -0.58 -26.67 16.66 -3.96 -0.07 -26.73 16 20 C -0.17 -5.04 5.53 -20.05 -0.11 -5.15 16 21 C -0.04 -1.07 8.57 22.52 0.19 -0.88 16 22 C -0.11 -2.01 9.81 22.25 0.22 -1.79 16 23 C 0.01 0.25 6.32 22.39 0.14 0.39 16 24 Cl -0.03 -0.51 28.94 -2.72 -0.08 -0.59 16 25 C -0.14 -2.79 9.79 22.30 0.22 -2.57 16 26 C 0.14 3.91 7.24 22.67 0.16 4.07 16 27 F -0.13 -4.11 16.28 44.97 0.73 -3.38 16 28 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.00 0.01 7.67 -2.39 -0.02 0.00 16 30 H 0.02 1.06 7.46 -2.39 -0.02 1.04 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.20 5.86 -2.39 -0.01 2.18 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.15 3.86 5.84 -2.91 -0.02 3.85 16 36 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.17 327.17 4.11 -66.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.12 Total: 9.13 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 4.41 Total: 20.02 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.04 Total: -110.15 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.07 Total: -26.73 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.73 Total: -3.38 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -70.17 4.11 -66.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032506116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.398 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds