Wall clock time and date at job start Tue Mar 31 2020 13:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47007 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.46976 * 30.00465 * 3 2 1 6 6 H 1.48499 * 109.47082 * 150.00233 * 3 2 1 7 7 C 1.38812 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.47874 * 126.94354 * 359.97438 * 9 7 2 11 11 C 1.56019 * 105.10014 * 182.02189 * 10 9 7 12 12 H 1.09003 * 116.24510 * 159.68204 * 11 10 9 13 13 C 1.57084 * 99.60862 * 32.80587 * 11 10 9 14 14 C 1.49289 * 126.94523 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.15214 * 15.81478 * 14 9 7 16 16 C 1.56019 * 104.09038 * 246.67987 * 14 9 7 17 17 N 1.47870 * 105.10364 * 288.76362 * 16 14 9 18 18 C 1.34772 * 126.94873 * 182.00448 * 17 16 14 19 19 O 1.21562 * 120.00541 * 174.14485 * 18 17 16 20 20 C 1.47728 * 119.99677 * 354.13850 * 18 17 16 21 21 C 1.39666 * 120.11537 * 5.81670 * 20 18 17 22 22 C 1.37832 * 119.90156 * 179.73992 * 21 20 18 23 23 C 1.38638 * 120.13827 * 0.50914 * 22 21 20 24 24 F 1.35093 * 119.88798 * 179.74180 * 23 22 21 25 25 C 1.38741 * 120.22426 * 359.76480 * 23 22 21 26 26 Cl 1.73602 * 119.95063 * 180.02562 * 25 23 22 27 27 C 1.37960 * 120.09850 * 359.97438 * 25 23 22 28 28 H 0.97003 * 120.00071 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.31323 * 63.11345 * 10 9 7 30 30 H 1.09003 * 110.31162 * 300.92846 * 10 9 7 31 31 H 1.08999 * 112.36931 * 64.27343 * 13 11 10 32 32 H 1.09001 * 112.36601 * 191.71403 * 13 11 10 33 33 H 1.09002 * 110.31599 * 169.86267 * 16 14 9 34 34 H 1.09003 * 110.31881 * 47.66933 * 16 14 9 35 35 H 1.07997 * 120.04165 * 359.96677 * 21 20 18 36 36 H 1.08004 * 119.92761 * 180.25168 * 22 21 20 37 37 H 1.08001 * 120.06765 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3636 -4.1104 0.0531 12 1 -1.3407 -4.4456 0.4010 13 6 0.8849 -4.5252 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9647 -3.8351 0.2661 16 6 1.5079 -4.3458 -1.3902 17 7 0.0512 -4.5837 -1.3009 18 6 -0.7418 -5.1195 -2.2498 19 8 -1.9084 -5.3569 -2.0042 20 6 -0.1932 -5.4184 -3.5885 21 6 1.1721 -5.2610 -3.8374 22 6 1.6800 -5.5463 -5.0866 23 6 0.8371 -5.9787 -6.0987 24 9 1.3396 -6.2518 -7.3226 25 6 -0.5209 -6.1314 -5.8591 26 17 -1.5699 -6.6740 -7.1315 27 6 -1.0387 -5.8538 -4.6108 28 1 -0.4850 0.8401 0.0004 29 1 -0.5744 -2.1533 -0.9107 30 1 -0.5807 -2.0915 0.8780 31 1 0.8467 -4.1192 1.9223 32 1 1.0500 -5.6026 0.9096 33 1 2.0338 -5.2828 -1.5735 34 1 1.7263 -3.6274 -2.1803 35 1 1.8292 -4.9199 -3.0512 36 1 2.7364 -5.4286 -5.2784 37 1 -2.0958 -5.9733 -4.4247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032594449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:51 Heat of formation + Delta-G solvation = 23.712944 kcal Electronic energy + Delta-G solvation = -25073.832877 eV Core-core repulsion = 21180.330656 eV Total energy + Delta-G solvation = -3893.502220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.22663 -40.66075 -39.07993 -37.62499 -36.69770 -33.89240 -32.12266 -31.24861 -30.61559 -29.00067 -28.66778 -25.55875 -24.53177 -23.46871 -22.82401 -20.96894 -20.00264 -19.14600 -17.83077 -17.76669 -16.83706 -16.64833 -16.03716 -15.82881 -15.32067 -14.96201 -14.59978 -14.14950 -14.09308 -13.79814 -13.59739 -13.46875 -13.15059 -12.99247 -12.25695 -12.02035 -11.83564 -11.67811 -11.55421 -11.36116 -11.24811 -11.11682 -10.94840 -10.72905 -10.66836 -10.27333 -10.14968 -9.77964 -9.70427 -9.28672 -8.93876 -8.78799 -8.17820 -7.02635 -5.85230 -3.20559 0.43555 0.81410 1.73723 2.68810 3.15132 3.32295 3.37155 3.40056 3.62102 3.77278 4.34021 4.37415 4.43439 4.76931 4.89140 4.93422 5.03549 5.19870 5.30379 5.43976 5.46044 5.51108 5.64602 5.64666 5.69229 5.78937 5.93409 5.97629 6.13708 6.27669 6.30398 6.39974 6.46742 6.55203 7.32658 7.37581 7.63047 7.86806 8.00741 8.35798 9.01159 9.62395 10.29885 11.26765 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003527 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.845689 B = 7937.692798 C = 8524.084209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.099 3.901 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.110 0.890 16 C 0.068 3.932 17 N -0.597 5.597 18 C 0.572 3.428 19 O -0.547 6.547 20 C -0.120 4.120 21 C -0.085 4.085 22 C -0.149 4.149 23 C 0.126 3.874 24 F -0.126 7.126 25 C -0.085 4.085 26 Cl -0.049 7.049 27 C -0.027 4.027 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.151 0.849 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -13.368 -7.537 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.057 4.057 17 N -0.329 5.329 18 C 0.361 3.639 19 O -0.426 6.426 20 C -0.124 4.124 21 C -0.102 4.102 22 C -0.168 4.168 23 C 0.106 3.894 24 F -0.104 7.104 25 C -0.113 4.113 26 Cl -0.020 7.020 27 C -0.047 4.047 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.195 0.805 36 H 0.168 0.832 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.450 -13.267 -7.621 15.495 hybrid contribution 0.376 0.891 -0.648 1.165 sum 2.826 -12.375 -8.269 15.150 Atomic orbital electron populations 1.69903 1.04989 1.25481 1.56038 1.24824 0.95671 0.97780 1.01745 0.86122 0.78597 0.83384 0.77609 1.21559 1.21635 1.20582 1.19039 0.90420 0.81976 1.44936 0.90046 1.45258 1.01309 0.99269 1.86211 1.21971 0.84768 0.86991 1.01558 1.24444 0.98096 0.97693 0.80041 0.86484 1.24156 0.96436 0.99049 0.99351 1.23232 0.96798 0.86400 0.90462 0.87238 1.23763 0.80355 0.98890 1.02728 1.49066 1.09230 1.59153 1.15480 1.17564 0.85300 0.77845 0.83164 1.90758 1.16535 1.54357 1.80992 1.20020 0.93918 1.03643 0.94770 1.22852 0.95610 0.93873 0.97904 1.21163 1.00770 1.02572 0.92262 1.17690 0.90293 1.00057 0.81405 1.91542 1.87474 1.90979 1.40397 1.20809 0.90049 1.08305 0.92145 1.98386 1.65466 1.88286 1.49838 1.21058 1.01523 0.93285 0.88802 0.93472 0.93336 0.92339 0.89510 0.91454 0.91718 0.89896 0.80509 0.83155 0.82728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.78 10.56 55.49 0.59 -25.19 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.24 -5.93 10.38 -15.06 -0.16 -6.08 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -13.32 3.02 -156.36 -0.47 -13.79 16 10 C 0.17 3.88 4.76 -1.67 -0.01 3.87 16 11 C 0.10 1.78 5.26 -62.54 -0.33 1.45 16 12 H 0.12 2.05 8.03 -51.93 -0.42 1.64 16 13 C -0.15 -2.30 6.81 -22.32 -0.15 -2.45 16 14 C 0.14 2.32 5.53 -62.57 -0.35 1.97 16 15 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 16 C 0.07 1.00 4.23 -1.67 -0.01 0.99 16 17 N -0.60 -10.14 2.95 -158.95 -0.47 -10.61 16 18 C 0.57 10.01 7.85 -12.38 -0.10 9.92 16 19 O -0.55 -11.06 16.70 5.31 0.09 -10.97 16 20 C -0.12 -1.74 5.87 -104.97 -0.62 -2.36 16 21 C -0.08 -1.02 8.77 -39.20 -0.34 -1.37 16 22 C -0.15 -1.60 10.01 -39.58 -0.40 -1.99 16 23 C 0.13 1.51 7.28 -39.25 -0.29 1.22 16 24 F -0.13 -1.51 16.83 2.25 0.04 -1.47 16 25 C -0.09 -1.08 6.32 -39.50 -0.25 -1.33 16 26 Cl -0.05 -0.57 28.60 -51.86 -1.48 -2.05 16 27 C -0.03 -0.37 9.37 -39.16 -0.37 -0.74 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 30 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 34 H 0.08 1.32 6.86 -51.93 -0.36 0.96 16 35 H 0.18 1.97 2.80 -53.90 -0.15 1.82 16 36 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.16 2.09 7.66 -52.49 -0.40 1.69 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -29.83 323.45 -9.02 -38.85 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.71 Total: 1.53 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.45 Total: 2.94 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.35 Total: -49.60 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.83 -9.02 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032594449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.564 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds