Wall clock time and date at job start Tue Mar 31 2020 13:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47007 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.46976 * 30.00465 * 3 2 1 6 6 H 1.48499 * 109.47082 * 150.00233 * 3 2 1 7 7 C 1.38812 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.47874 * 126.94354 * 359.97438 * 9 7 2 11 11 C 1.56019 * 105.10014 * 182.02189 * 10 9 7 12 12 H 1.09003 * 116.24510 * 159.68204 * 11 10 9 13 13 C 1.57084 * 99.60862 * 32.80587 * 11 10 9 14 14 C 1.49289 * 126.94523 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.15214 * 15.81478 * 14 9 7 16 16 C 1.56019 * 104.09038 * 246.67987 * 14 9 7 17 17 N 1.47870 * 105.10364 * 288.76362 * 16 14 9 18 18 C 1.34772 * 126.94873 * 182.00448 * 17 16 14 19 19 O 1.21562 * 120.00541 * 174.14485 * 18 17 16 20 20 C 1.47728 * 119.99677 * 354.13850 * 18 17 16 21 21 C 1.39666 * 120.11537 * 5.81670 * 20 18 17 22 22 C 1.37832 * 119.90156 * 179.73992 * 21 20 18 23 23 C 1.38638 * 120.13827 * 0.50914 * 22 21 20 24 24 F 1.35093 * 119.88798 * 179.74180 * 23 22 21 25 25 C 1.38741 * 120.22426 * 359.76480 * 23 22 21 26 26 Cl 1.73602 * 119.95063 * 180.02562 * 25 23 22 27 27 C 1.37960 * 120.09850 * 359.97438 * 25 23 22 28 28 H 0.97003 * 120.00071 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.31323 * 63.11345 * 10 9 7 30 30 H 1.09003 * 110.31162 * 300.92846 * 10 9 7 31 31 H 1.08999 * 112.36931 * 64.27343 * 13 11 10 32 32 H 1.09001 * 112.36601 * 191.71403 * 13 11 10 33 33 H 1.09002 * 110.31599 * 169.86267 * 16 14 9 34 34 H 1.09003 * 110.31881 * 47.66933 * 16 14 9 35 35 H 1.07997 * 120.04165 * 359.96677 * 21 20 18 36 36 H 1.08004 * 119.92761 * 180.25168 * 22 21 20 37 37 H 1.08001 * 120.06765 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3636 -4.1104 0.0531 12 1 -1.3407 -4.4456 0.4010 13 6 0.8849 -4.5252 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9647 -3.8351 0.2661 16 6 1.5079 -4.3458 -1.3902 17 7 0.0512 -4.5837 -1.3009 18 6 -0.7418 -5.1195 -2.2498 19 8 -1.9084 -5.3569 -2.0042 20 6 -0.1932 -5.4184 -3.5885 21 6 1.1721 -5.2610 -3.8374 22 6 1.6800 -5.5463 -5.0866 23 6 0.8371 -5.9787 -6.0987 24 9 1.3396 -6.2518 -7.3226 25 6 -0.5209 -6.1314 -5.8591 26 17 -1.5699 -6.6740 -7.1315 27 6 -1.0387 -5.8538 -4.6108 28 1 -0.4850 0.8401 0.0004 29 1 -0.5744 -2.1533 -0.9107 30 1 -0.5807 -2.0915 0.8780 31 1 0.8467 -4.1192 1.9223 32 1 1.0500 -5.6026 0.9096 33 1 2.0338 -5.2828 -1.5735 34 1 1.7263 -3.6274 -2.1803 35 1 1.8292 -4.9199 -3.0512 36 1 2.7364 -5.4286 -5.2784 37 1 -2.0958 -5.9733 -4.4247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032594449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:50 Heat of formation + Delta-G solvation = 6.977477 kcal Electronic energy + Delta-G solvation = -25074.558581 eV Core-core repulsion = 21180.330656 eV Total energy + Delta-G solvation = -3894.227924 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.16934 -41.97151 -40.27145 -38.93826 -37.67245 -35.55821 -33.66403 -32.24923 -31.93185 -30.37989 -30.24564 -27.09465 -26.02049 -24.60059 -24.02680 -22.28610 -21.43405 -20.57169 -19.20309 -18.79119 -18.27680 -17.88055 -17.23933 -16.96698 -16.74718 -16.34914 -15.97218 -15.64648 -15.08960 -15.04405 -14.88627 -14.83180 -14.25894 -14.07115 -13.73524 -13.50065 -13.28950 -13.08970 -12.86874 -12.70481 -12.64394 -12.58090 -12.25124 -12.17469 -12.10578 -11.96478 -11.64273 -11.50022 -11.16144 -10.68936 -10.25485 -9.95530 -9.57023 -8.87922 -7.82233 -5.17499 -0.59651 -0.14133 0.77497 1.50128 1.50420 1.53259 1.59196 1.86306 2.47515 2.51007 2.81542 3.25636 3.35493 3.45511 3.47603 3.76187 3.78655 3.90657 3.94850 4.03142 4.22171 4.29069 4.50102 4.57160 4.62350 4.65147 4.79908 4.83287 4.92413 4.99713 5.05904 5.16976 5.25096 5.42208 5.48376 5.55051 5.68990 6.12203 6.54269 7.00844 7.05448 7.74169 8.43605 9.28975 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003527 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.845689 B = 7937.692798 C = 8524.084209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.305 1.305 6 H -0.261 1.261 7 C -0.226 4.226 8 H 0.100 0.900 9 N -0.616 5.616 10 C 0.185 3.815 11 C 0.101 3.899 12 H 0.115 0.885 13 C -0.129 4.129 14 C 0.136 3.864 15 H 0.144 0.856 16 C 0.071 3.929 17 N -0.600 5.600 18 C 0.567 3.433 19 O -0.586 6.586 20 C -0.137 4.137 21 C -0.076 4.076 22 C -0.133 4.133 23 C 0.127 3.873 24 F -0.124 7.124 25 C -0.091 4.091 26 Cl -0.045 7.045 27 C -0.034 4.034 28 H 0.242 0.758 29 H -0.002 1.002 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.192 0.808 36 H 0.188 0.812 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -15.289 -8.192 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.185 1.185 7 C -0.355 4.355 8 H 0.118 0.882 9 N -0.340 5.340 10 C 0.059 3.941 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.168 4.168 14 C 0.030 3.970 15 H 0.161 0.839 16 C -0.052 4.052 17 N -0.331 5.331 18 C 0.358 3.642 19 O -0.468 6.468 20 C -0.141 4.141 21 C -0.093 4.093 22 C -0.151 4.151 23 C 0.106 3.894 24 F -0.102 7.102 25 C -0.118 4.118 26 Cl -0.016 7.016 27 C -0.054 4.054 28 H 0.051 0.949 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.208 0.792 36 H 0.205 0.795 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.935 -15.237 -8.282 18.330 hybrid contribution -0.672 1.423 -0.500 1.651 sum 5.264 -13.814 -8.783 17.195 Atomic orbital electron populations 1.70147 1.06625 1.25034 1.58904 1.25612 0.96273 1.01075 1.03286 0.85153 0.77916 0.79572 0.77140 1.21886 1.23273 1.18536 1.19553 0.91369 0.82950 1.41624 0.88248 1.45506 1.01320 1.01180 1.86015 1.21545 0.85221 0.90013 0.97307 1.24250 0.99724 0.94215 0.81962 0.86745 1.24070 0.93519 1.01061 0.98177 1.23691 0.98571 0.83011 0.91741 0.83900 1.23805 0.79186 1.01140 1.01075 1.49115 1.10343 1.58729 1.14926 1.18058 0.84861 0.77201 0.84114 1.90728 1.18236 1.56120 1.81765 1.19846 0.95306 1.05661 0.93278 1.22927 0.94350 0.93179 0.98867 1.21492 1.02252 1.00479 0.90895 1.17848 0.90091 0.99663 0.81775 1.91553 1.87342 1.90905 1.40400 1.20840 0.90670 1.08426 0.91888 1.98388 1.65524 1.88217 1.49429 1.20978 1.01225 0.93866 0.89299 0.94853 0.98423 0.96330 0.89994 0.87647 0.86375 0.90832 0.79191 0.79526 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.63 10.56 21.65 0.23 -56.40 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.97 43.58 29.55 68.60 2.03 45.61 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.31 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.23 -11.20 10.38 84.03 0.87 -10.33 16 8 H 0.10 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -27.16 3.02 -648.60 -1.96 -29.12 16 10 C 0.19 8.72 4.76 87.16 0.42 9.13 16 11 C 0.10 3.63 5.26 46.93 0.25 3.88 16 12 H 0.11 4.13 8.03 -2.39 -0.02 4.11 16 13 C -0.13 -3.58 6.81 33.45 0.23 -3.35 16 14 C 0.14 4.03 5.53 46.92 0.26 4.28 16 15 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 16 C 0.07 1.84 4.23 87.16 0.37 2.21 16 17 N -0.60 -19.63 2.95 -775.09 -2.29 -21.92 16 18 C 0.57 19.68 7.85 86.75 0.68 20.36 16 19 O -0.59 -24.38 16.70 -3.91 -0.07 -24.44 16 20 C -0.14 -3.81 5.87 -20.09 -0.12 -3.93 16 21 C -0.08 -1.57 8.77 22.52 0.20 -1.37 16 22 C -0.13 -2.30 10.01 22.27 0.22 -2.08 16 23 C 0.13 2.68 7.28 22.49 0.16 2.84 16 24 F -0.12 -2.61 16.83 44.97 0.76 -1.85 16 25 C -0.09 -2.16 6.32 22.32 0.14 -2.01 16 26 Cl -0.04 -1.00 28.60 -2.72 -0.08 -1.08 16 27 C -0.03 -0.91 9.37 22.54 0.21 -0.70 16 28 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.00 -0.14 7.68 -2.39 -0.02 -0.16 16 30 H 0.02 1.00 7.46 -2.39 -0.02 0.98 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.12 1.92 6.88 -2.39 -0.02 1.90 16 34 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 35 H 0.19 3.36 2.80 -4.24 -0.01 3.35 16 36 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.15 4.08 7.66 -2.91 -0.02 4.05 16 Total: -1.00 -69.53 323.45 4.10 -65.42 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.12 Total: 8.13 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 4.35 Total: 15.65 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -4.01 Total: -107.43 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.44 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.76 Total: -1.85 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -69.53 4.10 -65.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032594449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.399 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds