Wall clock time and date at job start Tue Mar 31 2020 13:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00155 * 2 1 4 4 H 1.48493 * 109.47152 * 274.98319 * 3 2 1 5 5 H 1.48498 * 109.46744 * 34.98889 * 3 2 1 6 6 H 1.48506 * 109.46665 * 154.98211 * 3 2 1 7 7 C 1.38814 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99314 * 173.10544 * 7 2 1 9 9 N 1.36926 * 120.00159 * 353.09880 * 7 2 1 10 10 C 1.47867 * 126.94536 * 4.94027 * 9 7 2 11 11 C 1.56020 * 105.10714 * 182.02308 * 10 9 7 12 12 H 1.09003 * 116.25241 * 159.67755 * 11 10 9 13 13 C 1.57093 * 99.60553 * 32.80464 * 11 10 9 14 14 C 1.49243 * 126.85385 * 184.90980 * 9 7 2 15 15 H 1.09003 * 116.21044 * 15.78038 * 14 9 7 16 16 C 1.56024 * 104.11631 * 246.58307 * 14 9 7 17 17 N 1.47864 * 105.19033 * 288.90917 * 16 14 9 18 18 C 1.34780 * 126.94715 * 181.95344 * 17 16 14 19 19 O 1.21566 * 120.00074 * 174.61786 * 18 17 16 20 20 C 1.47700 * 119.99517 * 354.61770 * 18 17 16 21 21 C 1.39677 * 120.16034 * 318.68931 * 20 18 17 22 22 C 1.37851 * 119.90228 * 179.97438 * 21 20 18 23 23 C 1.38456 * 120.22555 * 0.02562 * 22 21 20 24 24 C 1.38293 * 120.33215 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 119.95536 * 180.02562 * 24 23 22 26 26 C 1.38440 * 120.08959 * 359.74305 * 24 23 22 27 27 F 1.35100 * 120.11590 * 180.27856 * 26 24 23 28 28 H 0.97004 * 119.99410 * 0.02562 * 1 2 3 29 29 H 1.09002 * 110.31751 * 63.11974 * 10 9 7 30 30 H 1.08999 * 110.31795 * 300.92605 * 10 9 7 31 31 H 1.08999 * 112.36429 * 64.27265 * 13 11 10 32 32 H 1.08994 * 112.36743 * 191.71878 * 13 11 10 33 33 H 1.09001 * 110.31219 * 169.95072 * 16 14 9 34 34 H 1.08998 * 110.31610 * 47.86853 * 16 14 9 35 35 H 1.07996 * 120.04797 * 0.02562 * 21 20 18 36 36 H 1.07994 * 119.89116 * 180.02562 * 22 21 20 37 37 H 1.08005 * 119.83125 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0844 -1.2055 -0.1128 9 7 1.3329 -2.3838 0.1414 10 6 -0.1332 -2.5659 0.2035 11 6 -0.3439 -4.0964 0.4212 12 1 -1.3087 -4.3969 0.8300 13 6 0.9311 -4.4169 1.2811 14 6 1.9275 -3.7472 0.2639 15 1 2.9899 -3.7893 0.5039 16 6 1.4863 -4.4736 -1.0445 17 7 0.0343 -4.7053 -0.8884 18 6 -0.7827 -5.3383 -1.7535 19 8 -1.9426 -5.5448 -1.4539 20 6 -0.2686 -5.7810 -3.0654 21 6 0.5859 -4.9551 -3.7994 22 6 1.0630 -5.3739 -5.0230 23 6 0.6976 -6.6104 -5.5275 24 6 -0.1479 -7.4358 -4.8089 25 17 -0.5992 -8.9844 -5.4504 26 6 -0.6303 -7.0311 -3.5759 27 9 -1.4518 -7.8394 -2.8709 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5938 -2.2499 -0.7325 30 1 -0.5493 -2.0040 1.0397 31 1 0.9194 -3.9089 2.2454 32 1 1.1025 -5.4882 1.3853 33 1 2.0123 -5.4229 -1.1460 34 1 1.6776 -3.8412 -1.9114 35 1 0.8731 -3.9903 -3.4084 36 1 1.7240 -4.7353 -5.5901 37 1 1.0748 -6.9319 -6.4871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032599624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:08 Heat of formation + Delta-G solvation = 8.955426 kcal Electronic energy + Delta-G solvation = -25344.615277 eV Core-core repulsion = 21450.473123 eV Total energy + Delta-G solvation = -3894.142154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.01780 -40.41516 -39.09309 -37.69163 -36.70415 -33.75721 -32.12958 -30.91806 -30.67445 -29.03328 -28.60858 -25.38062 -24.64409 -23.14711 -22.95541 -20.90685 -19.96193 -18.94243 -17.90143 -17.46957 -16.86263 -16.56587 -16.07949 -15.69473 -15.49816 -15.05545 -14.59710 -14.48571 -14.00420 -13.51840 -13.42536 -13.30954 -13.10795 -12.52480 -12.32372 -12.10247 -11.87553 -11.70269 -11.61238 -11.35367 -11.28179 -11.10086 -10.91931 -10.82231 -10.67568 -10.31407 -10.14980 -9.72122 -9.71992 -9.22399 -8.93965 -8.75502 -8.11884 -7.01293 -5.85298 -3.19129 0.53737 0.74764 1.70824 2.76281 3.15152 3.32024 3.38078 3.40380 3.41128 3.84352 4.35404 4.35726 4.58700 4.68595 4.85676 4.98023 5.08425 5.22095 5.29726 5.46647 5.54218 5.55635 5.60690 5.69939 5.81402 5.83866 5.96153 6.11558 6.20183 6.31541 6.33327 6.43990 6.51725 6.59663 7.35167 7.38272 7.63977 7.90633 8.02030 8.37478 9.02178 9.63559 10.32315 11.27001 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021121 B = 0.003544 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.384643 B = 7899.811240 C = 8541.626488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.142 3.858 15 H 0.109 0.891 16 C 0.077 3.923 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.536 6.536 20 C -0.142 4.142 21 C -0.052 4.052 22 C -0.123 4.123 23 C -0.067 4.067 24 C -0.085 4.085 25 Cl -0.050 7.050 26 C 0.156 3.844 27 F -0.111 7.111 28 H 0.255 0.745 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -13.676 -8.587 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.127 0.873 16 C -0.048 4.048 17 N -0.330 5.330 18 C 0.359 3.641 19 O -0.414 6.414 20 C -0.146 4.146 21 C -0.070 4.070 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.113 4.113 25 Cl -0.021 7.021 26 C 0.135 3.865 27 F -0.089 7.089 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.368 -13.693 -8.515 16.472 hybrid contribution 0.193 0.655 -0.155 0.700 sum 3.561 -13.038 -8.670 16.057 Atomic orbital electron populations 1.69927 1.05006 1.25439 1.55895 1.24840 0.95644 0.97740 1.01792 0.86135 0.78731 0.83563 0.77493 1.21669 1.21619 1.20540 1.19033 0.91073 0.82164 1.44022 0.90085 1.45243 1.01291 1.00334 1.85256 1.21960 0.84837 0.87208 1.01222 1.24428 0.98141 0.96052 0.81669 0.86592 1.24196 0.96350 0.99528 0.98910 1.23234 0.96671 0.86127 0.90708 0.87314 1.23516 0.79791 0.99082 1.02386 1.49099 1.09671 1.54129 1.20130 1.17438 0.85311 0.78385 0.82917 1.90803 1.16966 1.56698 1.76948 1.20094 1.02279 0.94306 0.97939 1.21670 0.92080 0.99719 0.93578 1.21173 1.01059 0.95869 0.95989 1.21127 0.94749 0.93073 0.99627 1.20846 1.04387 0.91138 0.94914 1.98385 1.91749 1.26212 1.85756 1.17324 0.91463 0.88518 0.89230 1.91594 1.68728 1.71174 1.77418 0.93505 0.93540 0.92242 0.89552 0.91558 0.92602 0.90697 0.82916 0.83610 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.72 10.60 55.49 0.59 -25.13 16 2 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 3 Si 0.91 20.85 29.56 -169.99 -5.02 15.83 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.24 -5.93 10.36 -15.06 -0.16 -6.09 16 8 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 9 N -0.60 -13.54 3.02 -156.21 -0.47 -14.01 16 10 C 0.17 3.96 4.77 -1.68 -0.01 3.95 16 11 C 0.10 1.86 5.25 -62.54 -0.33 1.54 16 12 H 0.12 2.15 8.03 -51.93 -0.42 1.73 16 13 C -0.15 -2.45 6.82 -22.14 -0.15 -2.60 16 14 C 0.14 2.46 5.54 -62.42 -0.35 2.12 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 16 C 0.08 1.23 5.24 -1.68 -0.01 1.22 16 17 N -0.60 -10.77 2.94 -157.92 -0.47 -11.24 16 18 C 0.57 10.79 7.32 -12.39 -0.09 10.70 16 19 O -0.54 -11.86 16.68 5.31 0.09 -11.77 16 20 C -0.14 -2.20 5.49 -104.91 -0.58 -2.78 16 21 C -0.05 -0.66 8.53 -39.19 -0.33 -0.99 16 22 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 23 C -0.07 -0.63 9.82 -39.48 -0.39 -1.02 16 24 C -0.09 -1.02 6.32 -39.49 -0.25 -1.27 16 25 Cl -0.05 -0.55 28.61 -51.86 -1.48 -2.04 16 26 C 0.16 2.32 7.22 -38.93 -0.28 2.04 16 27 F -0.11 -1.86 15.86 2.25 0.04 -1.83 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.22 7.76 -51.93 -0.40 0.82 16 30 H 0.06 1.51 7.38 -51.93 -0.38 1.13 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.22 5.81 -51.93 -0.30 0.92 16 35 H 0.15 2.03 5.87 -52.49 -0.31 1.72 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -30.81 326.48 -9.12 -39.93 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -3.90 Total: 0.27 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.41 Total: 5.07 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.35 Total: -50.37 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.81 -9.12 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032599624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.882 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds