Wall clock time and date at job start Tue Mar 31 2020 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00315 * 2 1 4 4 H 1.48495 * 109.47178 * 239.99916 * 3 2 1 5 5 H 1.48501 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47115 * 119.99872 * 3 2 1 7 7 C 1.38815 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.47867 * 126.94311 * 0.02562 * 9 7 2 11 11 C 1.55482 * 105.17128 * 181.92248 * 10 9 7 12 12 H 1.08996 * 116.03877 * 159.75226 * 11 10 9 13 13 C 1.57432 * 99.68528 * 32.85610 * 11 10 9 14 14 C 1.49287 * 126.94374 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15520 * 15.84637 * 14 9 7 16 16 C 1.56018 * 104.09263 * 246.70045 * 14 9 7 17 17 N 1.47869 * 105.10314 * 288.76720 * 16 14 9 18 18 C 1.34780 * 126.94828 * 181.97804 * 17 16 14 19 19 O 1.21561 * 120.00500 * 184.89393 * 18 17 16 20 20 C 1.47777 * 119.99438 * 4.88838 * 18 17 16 21 21 C 1.39606 * 120.14341 * 315.14751 * 20 18 17 22 22 C 1.38122 * 119.83406 * 180.02562 * 21 20 18 23 23 F 1.35104 * 119.93479 * 179.97438 * 22 21 20 24 24 C 1.38621 * 120.13551 * 359.97438 * 22 21 20 25 25 C 1.38246 * 120.28890 * 0.04328 * 24 22 21 26 26 C 1.38149 * 120.15724 * 359.95657 * 25 24 22 27 27 Cl 1.73604 * 120.06376 * 180.02562 * 26 25 24 28 28 H 0.96996 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09006 * 110.31626 * 300.90783 * 10 9 7 30 30 H 1.08998 * 110.31338 * 62.98905 * 10 9 7 31 31 H 1.09002 * 112.53808 * 191.70607 * 13 11 10 32 32 H 1.09001 * 112.31786 * 64.17470 * 13 11 10 33 33 H 1.08999 * 110.31906 * 169.86215 * 16 14 9 34 34 H 1.08996 * 110.40261 * 47.71444 * 16 14 9 35 35 H 1.08000 * 120.08583 * 359.75504 * 21 20 18 36 36 H 1.08001 * 119.85711 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.91841 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5669 -0.0005 11 6 -0.3650 -4.1049 0.0498 12 1 -1.3442 -4.4355 0.3960 13 6 0.8839 -4.5252 0.9113 14 6 1.9101 -3.7618 -0.0005 15 1 2.9643 -3.8353 0.2666 16 6 1.5082 -4.3457 -1.3904 17 7 0.0514 -4.5836 -1.3016 18 6 -0.7414 -5.1188 -2.2511 19 8 -1.9432 -5.1761 -2.0782 20 6 -0.1494 -5.6361 -3.5025 21 6 0.8223 -4.8947 -4.1771 22 6 1.3709 -5.3840 -5.3465 23 9 2.3111 -4.6681 -6.0013 24 6 0.9589 -6.6082 -5.8496 25 6 -0.0033 -7.3466 -5.1861 26 6 -0.5600 -6.8687 -4.0156 27 17 -1.7676 -7.7982 -3.1840 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5815 -2.0914 0.8765 30 1 -0.5741 -2.1518 -0.9112 31 1 1.0490 -5.6026 0.9097 32 1 0.8451 -4.1191 1.9221 33 1 2.0341 -5.2827 -1.5737 34 1 1.7270 -3.6286 -2.1815 35 1 1.1412 -3.9391 -3.7880 36 1 1.3905 -6.9863 -6.7645 37 1 -0.3202 -8.2994 -5.5837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032645071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:43 Heat of formation + Delta-G solvation = 9.797046 kcal Electronic energy + Delta-G solvation = -25394.972339 eV Core-core repulsion = 21500.866680 eV Total energy + Delta-G solvation = -3894.105659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.10221 -40.47152 -39.13163 -37.49913 -36.48876 -33.74043 -32.23539 -31.02063 -30.43920 -29.03077 -28.58490 -25.38276 -24.66112 -23.17654 -22.94784 -20.86647 -19.93991 -18.97862 -17.89344 -17.08112 -16.83237 -16.71683 -16.10686 -15.78401 -15.62394 -15.20802 -14.45311 -14.16096 -13.95660 -13.85164 -13.56064 -13.27550 -13.01480 -12.60458 -12.32368 -12.07670 -11.78525 -11.64447 -11.39491 -11.33130 -11.06561 -11.03683 -10.90386 -10.79099 -10.65086 -10.30500 -10.12815 -9.67927 -9.65490 -9.41572 -8.79419 -8.74038 -8.09223 -6.97702 -5.80359 -3.15437 0.51557 0.75578 1.95958 2.75056 3.14286 3.35476 3.36588 3.40126 3.42161 3.94577 4.31596 4.38576 4.49053 4.69183 4.88164 4.98513 5.12008 5.23291 5.30203 5.44646 5.51323 5.58372 5.63780 5.70428 5.72935 5.77651 5.86499 6.10844 6.21989 6.34910 6.35257 6.44972 6.53956 6.61225 7.37769 7.43042 7.67803 7.93241 8.06086 8.40033 9.06248 9.67218 10.35541 11.31615 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.004291 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.459636 B = 6523.548767 C = 7599.996327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.172 3.828 11 C 0.101 3.899 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.079 3.921 17 N -0.597 5.597 18 C 0.569 3.431 19 O -0.526 6.526 20 C -0.078 4.078 21 C -0.113 4.113 22 C 0.101 3.899 23 F -0.131 7.131 24 C -0.129 4.129 25 C -0.090 4.090 26 C -0.008 4.008 27 Cl -0.039 7.039 28 H 0.255 0.745 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -15.964 -8.091 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.189 4.189 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.330 5.330 18 C 0.355 3.645 19 O -0.403 6.403 20 C -0.082 4.082 21 C -0.132 4.132 22 C 0.082 3.918 23 F -0.109 7.109 24 C -0.148 4.148 25 C -0.109 4.109 26 C -0.036 4.036 27 Cl -0.010 7.010 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.796 -15.764 -8.000 17.769 hybrid contribution 0.553 1.059 -0.291 1.230 sum 2.349 -14.705 -8.291 17.044 Atomic orbital electron populations 1.69899 1.04961 1.25529 1.56122 1.24816 0.95667 0.97724 1.01860 0.86200 0.78470 0.83146 0.77916 1.21128 1.21599 1.21075 1.18998 0.90382 0.82035 1.44842 0.90166 1.45249 1.01301 0.99263 1.86286 1.21848 0.84741 0.87135 1.01535 1.24367 0.97929 0.97708 0.80075 0.86620 1.24211 0.96496 0.98989 0.99244 1.23186 0.96672 0.86332 0.90589 0.87412 1.23507 0.79769 0.99015 1.02372 1.49131 1.09467 1.58911 1.15493 1.17494 0.86081 0.78627 0.82261 1.90812 1.13400 1.57431 1.78658 1.19749 0.97176 0.94095 0.97196 1.21561 0.95641 1.01741 0.94277 1.17563 0.90513 0.91368 0.92392 1.91551 1.62036 1.77347 1.80002 1.21214 0.98509 0.93583 1.01463 1.20840 0.96092 1.00751 0.93168 1.20940 0.94654 0.93009 0.95040 1.98409 1.53592 1.71503 1.77511 0.93463 0.92406 0.93363 0.91513 0.89587 0.92635 0.90890 0.82582 0.83496 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.56 55.49 0.59 -25.77 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.09 10.38 -15.06 -0.16 -6.24 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -13.89 3.02 -156.68 -0.47 -14.36 16 10 C 0.17 4.03 4.75 -1.97 -0.01 4.02 16 11 C 0.10 1.90 5.22 -62.64 -0.33 1.58 16 12 H 0.12 2.11 8.07 -51.93 -0.42 1.69 16 13 C -0.15 -2.44 6.83 -22.10 -0.15 -2.59 16 14 C 0.14 2.52 5.53 -62.55 -0.35 2.17 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.30 5.00 -1.68 -0.01 1.29 16 17 N -0.60 -10.78 2.95 -158.00 -0.47 -11.25 16 18 C 0.57 10.41 7.06 -12.36 -0.09 10.32 16 19 O -0.53 -11.01 15.96 5.31 0.08 -10.93 16 20 C -0.08 -1.18 5.50 -104.95 -0.58 -1.76 16 21 C -0.11 -1.57 8.56 -39.11 -0.33 -1.90 16 22 C 0.10 1.21 7.29 -39.48 -0.29 0.92 16 23 F -0.13 -1.64 17.26 2.25 0.04 -1.60 16 24 C -0.13 -1.21 10.02 -39.44 -0.40 -1.61 16 25 C -0.09 -0.88 9.81 -39.61 -0.39 -1.27 16 26 C -0.01 -0.11 6.34 -39.07 -0.25 -0.36 16 27 Cl -0.04 -0.54 27.00 -51.86 -1.40 -1.94 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.06 1.49 7.46 -51.93 -0.39 1.11 16 30 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.29 6.12 -51.93 -0.32 0.97 16 35 H 0.16 2.31 5.81 -52.49 -0.30 2.01 16 36 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -30.61 325.35 -9.07 -39.69 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.91 Total: 0.51 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -3.41 Total: 4.37 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.35 Total: -51.38 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.40 Total: -1.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.61 -9.07 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.482 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds