Wall clock time and date at job start Tue Mar 31 2020 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00315 * 2 1 4 4 H 1.48495 * 109.47178 * 239.99916 * 3 2 1 5 5 H 1.48501 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47115 * 119.99872 * 3 2 1 7 7 C 1.38815 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.47867 * 126.94311 * 0.02562 * 9 7 2 11 11 C 1.55482 * 105.17128 * 181.92248 * 10 9 7 12 12 H 1.08996 * 116.03877 * 159.75226 * 11 10 9 13 13 C 1.57432 * 99.68528 * 32.85610 * 11 10 9 14 14 C 1.49287 * 126.94374 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15520 * 15.84637 * 14 9 7 16 16 C 1.56018 * 104.09263 * 246.70045 * 14 9 7 17 17 N 1.47869 * 105.10314 * 288.76720 * 16 14 9 18 18 C 1.34780 * 126.94828 * 181.97804 * 17 16 14 19 19 O 1.21561 * 120.00500 * 184.89393 * 18 17 16 20 20 C 1.47777 * 119.99438 * 4.88838 * 18 17 16 21 21 C 1.39606 * 120.14341 * 315.14751 * 20 18 17 22 22 C 1.38122 * 119.83406 * 180.02562 * 21 20 18 23 23 F 1.35104 * 119.93479 * 179.97438 * 22 21 20 24 24 C 1.38621 * 120.13551 * 359.97438 * 22 21 20 25 25 C 1.38246 * 120.28890 * 0.04328 * 24 22 21 26 26 C 1.38149 * 120.15724 * 359.95657 * 25 24 22 27 27 Cl 1.73604 * 120.06376 * 180.02562 * 26 25 24 28 28 H 0.96996 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09006 * 110.31626 * 300.90783 * 10 9 7 30 30 H 1.08998 * 110.31338 * 62.98905 * 10 9 7 31 31 H 1.09002 * 112.53808 * 191.70607 * 13 11 10 32 32 H 1.09001 * 112.31786 * 64.17470 * 13 11 10 33 33 H 1.08999 * 110.31906 * 169.86215 * 16 14 9 34 34 H 1.08996 * 110.40261 * 47.71444 * 16 14 9 35 35 H 1.08000 * 120.08583 * 359.75504 * 21 20 18 36 36 H 1.08001 * 119.85711 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.91841 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5669 -0.0005 11 6 -0.3650 -4.1049 0.0498 12 1 -1.3442 -4.4355 0.3960 13 6 0.8839 -4.5252 0.9113 14 6 1.9101 -3.7618 -0.0005 15 1 2.9643 -3.8353 0.2666 16 6 1.5082 -4.3457 -1.3904 17 7 0.0514 -4.5836 -1.3016 18 6 -0.7414 -5.1188 -2.2511 19 8 -1.9432 -5.1761 -2.0782 20 6 -0.1494 -5.6361 -3.5025 21 6 0.8223 -4.8947 -4.1771 22 6 1.3709 -5.3840 -5.3465 23 9 2.3111 -4.6681 -6.0013 24 6 0.9589 -6.6082 -5.8496 25 6 -0.0033 -7.3466 -5.1861 26 6 -0.5600 -6.8687 -4.0156 27 17 -1.7676 -7.7982 -3.1840 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5815 -2.0914 0.8765 30 1 -0.5741 -2.1518 -0.9112 31 1 1.0490 -5.6026 0.9097 32 1 0.8451 -4.1191 1.9221 33 1 2.0341 -5.2827 -1.5737 34 1 1.7270 -3.6286 -2.1815 35 1 1.1412 -3.9391 -3.7880 36 1 1.3905 -6.9863 -6.7645 37 1 -0.3202 -8.2994 -5.5837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032645071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:43 Heat of formation + Delta-G solvation = -7.808000 kcal Electronic energy + Delta-G solvation = -25395.735751 eV Core-core repulsion = 21500.866680 eV Total energy + Delta-G solvation = -3894.869071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05005 -41.86246 -40.33591 -38.87257 -37.48738 -35.51152 -33.69631 -32.38667 -31.40415 -30.59548 -30.26411 -27.03117 -26.07047 -24.59938 -23.96150 -22.26112 -21.46608 -20.45292 -19.34583 -18.30773 -18.16472 -17.76300 -17.39184 -17.20899 -16.75598 -16.54121 -16.11593 -15.69419 -15.19219 -15.06375 -14.90566 -14.42695 -14.21108 -13.84066 -13.66249 -13.61721 -13.38288 -13.14878 -12.86573 -12.72168 -12.67469 -12.41144 -12.26377 -12.18214 -12.10260 -12.09594 -11.85532 -11.53995 -11.07289 -10.72048 -10.38445 -9.76937 -9.59028 -8.92523 -7.85023 -5.20907 -0.47053 -0.17125 0.97684 1.46830 1.49290 1.52779 1.55467 1.81784 2.28264 2.48158 2.96450 3.26158 3.32688 3.38209 3.54033 3.72702 3.82654 3.84726 3.95417 4.01865 4.18627 4.24763 4.51671 4.53035 4.64387 4.73352 4.78376 4.83787 4.91248 4.94427 5.00674 5.11124 5.21833 5.43771 5.49026 5.51757 5.64876 6.09006 6.51400 6.97970 7.02336 7.70311 8.40362 9.25983 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.004291 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.459636 B = 6523.548767 C = 7599.996327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.096 0.904 9 N -0.616 5.616 10 C 0.187 3.813 11 C 0.104 3.896 12 H 0.117 0.883 13 C -0.126 4.126 14 C 0.136 3.864 15 H 0.137 0.863 16 C 0.088 3.912 17 N -0.601 5.601 18 C 0.564 3.436 19 O -0.562 6.562 20 C -0.101 4.101 21 C -0.122 4.122 22 C 0.097 3.903 23 F -0.135 7.135 24 C -0.101 4.101 25 C -0.073 4.073 26 C -0.016 4.016 27 Cl -0.049 7.049 28 H 0.244 0.756 29 H 0.021 0.979 30 H -0.004 1.004 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.136 0.864 36 H 0.189 0.811 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -18.884 -9.609 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.360 4.360 8 H 0.114 0.886 9 N -0.340 5.340 10 C 0.061 3.939 11 C 0.001 3.999 12 H 0.135 0.865 13 C -0.165 4.165 14 C 0.029 3.971 15 H 0.155 0.845 16 C -0.036 4.036 17 N -0.333 5.333 18 C 0.353 3.647 19 O -0.442 6.442 20 C -0.105 4.105 21 C -0.142 4.142 22 C 0.078 3.922 23 F -0.113 7.113 24 C -0.120 4.120 25 C -0.091 4.091 26 C -0.044 4.044 27 Cl -0.020 7.020 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.014 0.986 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.207 0.793 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.277 -18.729 -9.521 21.441 hybrid contribution -0.171 1.899 0.096 1.909 sum 4.106 -16.831 -9.425 19.722 Atomic orbital electron populations 1.70149 1.06606 1.25229 1.58628 1.25638 0.96340 1.01119 1.03042 0.85187 0.77025 0.78977 0.78361 1.20324 1.23023 1.19872 1.19497 0.91261 0.83077 1.42189 0.88648 1.45488 1.01403 1.01009 1.86103 1.21425 0.85012 0.90156 0.97325 1.24199 0.99572 0.94269 0.81885 0.86498 1.24108 0.93461 1.00836 0.98136 1.23610 0.98385 0.83347 0.91723 0.84511 1.23391 0.79100 1.00344 1.00794 1.49193 1.10202 1.58751 1.15172 1.18053 0.85708 0.77908 0.83038 1.90776 1.14948 1.58914 1.79605 1.19460 0.98863 0.95663 0.96473 1.21351 0.96170 1.01131 0.95501 1.17668 0.90474 0.92270 0.91830 1.91546 1.62186 1.77708 1.79890 1.21649 0.96825 0.91623 1.01904 1.21266 0.94784 1.01786 0.91254 1.21161 0.94723 0.92399 0.96073 1.98408 1.54109 1.71440 1.77998 0.94715 0.96123 0.98556 0.87858 0.89741 0.88781 0.92539 0.84583 0.79335 0.79629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.21 10.56 21.65 0.23 -57.98 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.07 29.55 68.60 2.03 47.09 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.23 -12.14 10.38 84.03 0.87 -11.27 16 8 H 0.10 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.62 -29.16 3.02 -649.62 -1.96 -31.12 16 10 C 0.19 9.27 4.75 86.97 0.41 9.68 16 11 C 0.10 3.98 5.22 46.87 0.24 4.22 16 12 H 0.12 4.44 8.07 -2.39 -0.02 4.42 16 13 C -0.13 -3.88 6.83 33.59 0.23 -3.65 16 14 C 0.14 4.61 5.53 46.93 0.26 4.87 16 15 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 16 C 0.09 2.79 5.00 87.16 0.44 3.23 16 17 N -0.60 -21.81 2.95 -772.08 -2.28 -24.09 16 18 C 0.56 20.95 7.06 86.77 0.61 21.57 16 19 O -0.56 -24.35 15.96 -3.91 -0.06 -24.41 16 20 C -0.10 -2.97 5.50 -20.07 -0.11 -3.08 16 21 C -0.12 -3.29 8.56 22.57 0.19 -3.10 16 22 C 0.10 2.06 7.29 22.33 0.16 2.22 16 23 F -0.13 -3.06 17.26 44.97 0.78 -2.28 16 24 C -0.10 -1.43 10.02 22.36 0.22 -1.20 16 25 C -0.07 -1.10 9.81 22.25 0.22 -0.88 16 26 C -0.02 -0.38 6.34 22.60 0.14 -0.23 16 27 Cl -0.05 -1.26 27.00 -2.72 -0.07 -1.33 16 28 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.02 1.15 7.46 -2.38 -0.02 1.14 16 30 H 0.00 -0.22 7.67 -2.39 -0.02 -0.24 16 31 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.01 6.12 -2.39 -0.01 2.00 16 35 H 0.14 4.16 5.81 -2.91 -0.02 4.14 16 36 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -72.10 325.35 4.13 -67.96 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.12 Total: 7.16 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 4.36 Total: 19.01 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.01 Total: -113.20 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -72.10 4.13 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.154 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds