Wall clock time and date at job start Tue Mar 31 2020 13:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48503 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47125 * 299.99698 * 3 2 1 6 6 H 1.48497 * 109.47177 * 59.99791 * 3 2 1 7 7 C 1.38821 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00104 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47875 * 126.94811 * 359.97053 * 9 7 2 11 11 C 1.56007 * 105.10748 * 182.02681 * 10 9 7 12 12 H 1.08996 * 116.25543 * 159.68396 * 11 10 9 13 13 C 1.57083 * 99.60833 * 32.80148 * 11 10 9 14 14 C 1.49289 * 126.94419 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15061 * 15.81981 * 14 9 7 16 16 C 1.56018 * 104.09086 * 246.67297 * 14 9 7 17 17 N 1.47866 * 105.10918 * 288.76419 * 16 14 9 18 18 C 1.34769 * 126.94926 * 182.00170 * 17 16 14 19 19 O 1.21563 * 120.00362 * 174.13338 * 18 17 16 20 20 C 1.47791 * 119.99889 * 354.13083 * 18 17 16 21 21 C 1.39623 * 120.12378 * 185.63242 * 20 18 17 22 22 C 1.37892 * 119.92024 * 179.76847 * 21 20 18 23 23 C 1.38483 * 120.15846 * 0.48639 * 22 21 20 24 24 Cl 1.73604 * 119.88180 * 179.76469 * 23 22 21 25 25 C 1.38703 * 120.24243 * 359.79060 * 23 22 21 26 26 F 1.35095 * 119.95871 * 179.97438 * 25 23 22 27 27 C 1.38135 * 120.07757 * 359.95158 * 25 23 22 28 28 H 0.96995 * 119.99510 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.31509 * 63.11316 * 10 9 7 30 30 H 1.09005 * 110.31133 * 300.93406 * 10 9 7 31 31 H 1.09004 * 112.36569 * 64.27988 * 13 11 10 32 32 H 1.08998 * 112.36846 * 191.71269 * 13 11 10 33 33 H 1.09002 * 110.31437 * 169.85798 * 16 14 9 34 34 H 1.08994 * 110.31433 * 47.67922 * 16 14 9 35 35 H 1.08004 * 120.04018 * 359.97438 * 21 20 18 36 36 H 1.08001 * 119.92471 * 180.27479 * 22 21 20 37 37 H 1.08006 * 120.07624 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1423 -2.5669 0.0006 11 6 -0.3639 -4.1102 0.0538 12 1 -1.3412 -4.4453 0.4011 13 6 0.8839 -4.5248 0.9132 14 6 1.9102 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2673 16 6 1.5076 -4.3459 -1.3890 17 7 0.0509 -4.5837 -1.2997 18 6 -0.7421 -5.1195 -2.2485 19 8 -1.9087 -5.3570 -2.0028 20 6 -0.1934 -5.4184 -3.5879 21 6 -1.0373 -5.8627 -4.6077 22 6 -0.5217 -6.1357 -5.8571 23 6 0.8327 -5.9799 -6.1000 24 17 1.4752 -6.3315 -7.6740 25 6 1.6780 -5.5444 -5.0903 26 9 2.9985 -5.3948 -5.3335 27 6 1.1712 -5.2629 -3.8365 28 1 -0.4849 0.8400 -0.0004 29 1 -0.5739 -2.1538 -0.9110 30 1 -0.5814 -2.0910 0.8775 31 1 0.8451 -4.1183 1.9239 32 1 1.0490 -5.6022 0.9120 33 1 2.0334 -5.2829 -1.5724 34 1 1.7261 -3.6276 -2.1791 35 1 -2.0932 -5.9893 -4.4191 36 1 -1.1751 -6.4752 -6.6472 37 1 1.8294 -4.9234 -3.0503 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032645118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:54 Heat of formation + Delta-G solvation = 23.974332 kcal Electronic energy + Delta-G solvation = -25234.313081 eV Core-core repulsion = 21340.822195 eV Total energy + Delta-G solvation = -3893.490886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.10168 -40.65112 -39.09678 -37.68638 -36.69285 -33.92646 -32.27930 -30.90914 -30.65900 -29.06368 -28.68158 -25.59283 -24.65160 -23.19637 -23.01724 -20.91641 -20.01146 -19.17173 -17.97906 -17.12722 -16.79897 -16.72509 -15.98147 -15.85639 -15.72394 -15.11217 -14.70273 -14.16049 -14.04915 -13.65888 -13.46180 -13.43918 -13.07850 -12.62939 -12.40395 -12.05403 -11.82414 -11.78250 -11.61386 -11.39898 -11.22924 -11.10943 -10.95253 -10.72511 -10.67015 -10.26878 -10.11799 -9.79616 -9.70066 -9.27402 -8.94112 -8.78243 -8.18571 -7.01728 -5.84491 -3.19545 0.38838 0.85689 1.70395 2.68252 3.11535 3.33236 3.38688 3.41613 3.60734 3.81304 4.30946 4.35289 4.51454 4.77833 4.88239 4.96511 5.03842 5.20626 5.30351 5.44695 5.47448 5.53651 5.63716 5.65459 5.70135 5.75964 5.91587 6.00474 6.14229 6.28032 6.32526 6.41024 6.47507 6.54875 7.33400 7.37624 7.63988 7.85075 8.01399 8.32895 9.02280 9.63265 10.30702 11.27695 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003882 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.951094 B = 7211.068908 C = 8140.145701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.099 3.901 12 H 0.118 0.882 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.110 0.890 16 C 0.067 3.933 17 N -0.596 5.596 18 C 0.570 3.430 19 O -0.545 6.545 20 C -0.088 4.088 21 C -0.062 4.062 22 C -0.094 4.094 23 C -0.058 4.058 24 Cl -0.051 7.051 25 C 0.103 3.897 26 F -0.124 7.124 27 C -0.142 4.142 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -13.889 -8.464 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.003 4.003 12 H 0.136 0.864 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.058 4.058 17 N -0.328 5.328 18 C 0.359 3.641 19 O -0.424 6.424 20 C -0.091 4.091 21 C -0.081 4.081 22 C -0.112 4.112 23 C -0.086 4.086 24 Cl -0.022 7.022 25 C 0.083 3.917 26 F -0.102 7.102 27 C -0.161 4.161 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.350 -13.756 -8.539 16.247 hybrid contribution 0.729 0.996 -0.485 1.326 sum 2.078 -12.759 -9.024 15.766 Atomic orbital electron populations 1.69914 1.04983 1.25344 1.56224 1.24824 0.95684 0.97782 1.01778 0.86044 0.78735 0.83629 0.77300 1.20391 1.21731 1.21670 1.19099 0.90479 0.81960 1.44701 0.89973 1.45266 1.01315 0.99286 1.86181 1.21969 0.84787 0.86950 1.01572 1.24448 0.98121 0.97736 0.80023 0.86429 1.24165 0.96388 0.99063 0.99342 1.23245 0.96849 0.86395 0.90367 0.87190 1.23762 0.80282 0.98949 1.02806 1.49094 1.09260 1.58910 1.15521 1.17608 0.85336 0.77975 0.83175 1.90757 1.16434 1.54336 1.80916 1.19991 0.92924 1.00976 0.95202 1.21314 1.01162 0.95031 0.90637 1.20924 0.92207 1.00136 0.97971 1.21273 0.94451 1.05507 0.87406 1.98389 1.86617 1.93204 1.23988 1.17282 0.78328 1.02719 0.93401 1.91557 1.30722 1.93245 1.94711 1.22855 0.97055 0.99261 0.96917 0.93543 0.93346 0.92283 0.89451 0.91444 0.91741 0.89918 0.83059 0.83384 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.99 10.56 55.49 0.59 -25.40 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.00 10.38 -15.06 -0.16 -6.16 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -13.59 3.02 -156.33 -0.47 -14.07 16 10 C 0.17 3.93 4.76 -1.68 -0.01 3.92 16 11 C 0.10 1.79 5.25 -62.57 -0.33 1.46 16 12 H 0.12 2.06 8.03 -51.93 -0.42 1.65 16 13 C -0.15 -2.35 6.81 -22.29 -0.15 -2.50 16 14 C 0.14 2.41 5.53 -62.54 -0.35 2.06 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 16 C 0.07 1.05 4.23 -1.68 -0.01 1.04 16 17 N -0.60 -10.34 2.95 -158.87 -0.47 -10.81 16 18 C 0.57 9.99 7.85 -12.36 -0.10 9.89 16 19 O -0.54 -10.84 16.70 5.31 0.09 -10.75 16 20 C -0.09 -1.27 5.87 -104.97 -0.62 -1.89 16 21 C -0.06 -0.77 9.59 -39.19 -0.38 -1.14 16 22 C -0.09 -0.99 9.81 -39.62 -0.39 -1.37 16 23 C -0.06 -0.69 6.33 -39.32 -0.25 -0.94 16 24 Cl -0.05 -0.55 28.60 -51.86 -1.48 -2.03 16 25 C 0.10 1.34 7.27 -39.45 -0.29 1.05 16 26 F -0.12 -1.66 16.82 2.25 0.04 -1.62 16 27 C -0.14 -1.93 8.75 -39.12 -0.34 -2.27 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 30 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.81 6.88 -51.93 -0.36 0.45 16 34 H 0.08 1.42 6.86 -51.93 -0.36 1.07 16 35 H 0.15 1.75 7.66 -52.48 -0.40 1.34 16 36 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.18 2.40 2.81 -53.76 -0.15 2.25 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -29.93 323.45 -9.02 -38.95 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.71 Total: 1.70 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.45 Total: 2.97 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.35 Total: -50.28 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.93 -9.02 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.921 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds