Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48503 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47125 * 299.99698 * 3 2 1 6 6 H 1.48497 * 109.47177 * 59.99791 * 3 2 1 7 7 C 1.38821 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00104 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47875 * 126.94811 * 359.97053 * 9 7 2 11 11 C 1.56007 * 105.10748 * 182.02681 * 10 9 7 12 12 H 1.08996 * 116.25543 * 159.68396 * 11 10 9 13 13 C 1.57083 * 99.60833 * 32.80148 * 11 10 9 14 14 C 1.49289 * 126.94419 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15061 * 15.81981 * 14 9 7 16 16 C 1.56018 * 104.09086 * 246.67297 * 14 9 7 17 17 N 1.47866 * 105.10918 * 288.76419 * 16 14 9 18 18 C 1.34769 * 126.94926 * 182.00170 * 17 16 14 19 19 O 1.21563 * 120.00362 * 174.13338 * 18 17 16 20 20 C 1.47791 * 119.99889 * 354.13083 * 18 17 16 21 21 C 1.39623 * 120.12378 * 185.63242 * 20 18 17 22 22 C 1.37892 * 119.92024 * 179.76847 * 21 20 18 23 23 C 1.38483 * 120.15846 * 0.48639 * 22 21 20 24 24 Cl 1.73604 * 119.88180 * 179.76469 * 23 22 21 25 25 C 1.38703 * 120.24243 * 359.79060 * 23 22 21 26 26 F 1.35095 * 119.95871 * 179.97438 * 25 23 22 27 27 C 1.38135 * 120.07757 * 359.95158 * 25 23 22 28 28 H 0.96995 * 119.99510 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.31509 * 63.11316 * 10 9 7 30 30 H 1.09005 * 110.31133 * 300.93406 * 10 9 7 31 31 H 1.09004 * 112.36569 * 64.27988 * 13 11 10 32 32 H 1.08998 * 112.36846 * 191.71269 * 13 11 10 33 33 H 1.09002 * 110.31437 * 169.85798 * 16 14 9 34 34 H 1.08994 * 110.31433 * 47.67922 * 16 14 9 35 35 H 1.08004 * 120.04018 * 359.97438 * 21 20 18 36 36 H 1.08001 * 119.92471 * 180.27479 * 22 21 20 37 37 H 1.08006 * 120.07624 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1423 -2.5669 0.0006 11 6 -0.3639 -4.1102 0.0538 12 1 -1.3412 -4.4453 0.4011 13 6 0.8839 -4.5248 0.9132 14 6 1.9102 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2673 16 6 1.5076 -4.3459 -1.3890 17 7 0.0509 -4.5837 -1.2997 18 6 -0.7421 -5.1195 -2.2485 19 8 -1.9087 -5.3570 -2.0028 20 6 -0.1934 -5.4184 -3.5879 21 6 -1.0373 -5.8627 -4.6077 22 6 -0.5217 -6.1357 -5.8571 23 6 0.8327 -5.9799 -6.1000 24 17 1.4752 -6.3315 -7.6740 25 6 1.6780 -5.5444 -5.0903 26 9 2.9985 -5.3948 -5.3335 27 6 1.1712 -5.2629 -3.8365 28 1 -0.4849 0.8400 -0.0004 29 1 -0.5739 -2.1538 -0.9110 30 1 -0.5814 -2.0910 0.8775 31 1 0.8451 -4.1183 1.9239 32 1 1.0490 -5.6022 0.9120 33 1 2.0334 -5.2829 -1.5724 34 1 1.7261 -3.6276 -2.1791 35 1 -2.0932 -5.9893 -4.4191 36 1 -1.1751 -6.4752 -6.6472 37 1 1.8294 -4.9234 -3.0503 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032645118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = 7.344310 kcal Electronic energy + Delta-G solvation = -25235.034213 eV Core-core repulsion = 21340.822195 eV Total energy + Delta-G solvation = -3894.212017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.11277 -41.99386 -40.29283 -38.98521 -37.63846 -35.60878 -33.79166 -32.25025 -31.69095 -30.50117 -30.31372 -27.14129 -26.15806 -24.50800 -24.12522 -22.24703 -21.48471 -20.62811 -19.33132 -18.41130 -18.25938 -17.72637 -17.30027 -17.01754 -16.94927 -16.48057 -16.30660 -15.75422 -15.26300 -14.93762 -14.86758 -14.63808 -14.09423 -13.86378 -13.67236 -13.48767 -13.37698 -13.15831 -12.94093 -12.78209 -12.73618 -12.61646 -12.30163 -12.18176 -12.09377 -11.96461 -11.68977 -11.54192 -11.18441 -10.72377 -10.23395 -9.97643 -9.60201 -8.91010 -7.85161 -5.20419 -0.64989 -0.10493 0.78544 1.47263 1.48106 1.50954 1.57755 1.81023 2.45955 2.48367 2.81617 3.21417 3.32795 3.37780 3.51501 3.72128 3.79879 3.87519 3.94451 4.00013 4.18003 4.32519 4.42586 4.48632 4.57741 4.70391 4.74447 4.82808 4.84659 5.00299 5.06071 5.12031 5.21789 5.41268 5.44796 5.52008 5.66367 6.09598 6.49437 6.96382 7.03222 7.70754 8.40219 9.26188 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003882 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.951094 B = 7211.068908 C = 8140.145701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.301 1.301 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.616 5.616 10 C 0.185 3.815 11 C 0.103 3.897 12 H 0.121 0.879 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.140 0.860 16 C 0.074 3.926 17 N -0.600 5.600 18 C 0.566 3.434 19 O -0.577 6.577 20 C -0.107 4.107 21 C -0.060 4.060 22 C -0.078 4.078 23 C -0.056 4.056 24 Cl -0.038 7.038 25 C 0.093 3.907 26 F -0.127 7.127 27 C -0.141 4.141 28 H 0.243 0.757 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -16.090 -9.533 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.224 1.224 7 C -0.357 4.357 8 H 0.114 0.886 9 N -0.341 5.341 10 C 0.059 3.941 11 C 0.000 4.000 12 H 0.138 0.862 13 C -0.167 4.167 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.050 4.050 17 N -0.332 5.332 18 C 0.357 3.643 19 O -0.459 6.459 20 C -0.110 4.110 21 C -0.079 4.079 22 C -0.097 4.097 23 C -0.085 4.085 24 Cl -0.009 7.009 25 C 0.073 3.927 26 F -0.106 7.106 27 C -0.159 4.159 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.175 0.825 36 H 0.200 0.800 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.227 -16.005 -9.614 18.947 hybrid contribution 0.180 1.608 -0.243 1.636 sum 3.408 -14.397 -9.857 17.778 Atomic orbital electron populations 1.70145 1.06534 1.25050 1.58787 1.25607 0.96345 1.01014 1.03137 0.85079 0.78641 0.79880 0.76171 1.18248 1.22910 1.22428 1.19571 0.91304 0.83040 1.41808 0.88561 1.45506 1.01491 1.01044 1.86017 1.21562 0.84996 0.90078 0.97454 1.24272 0.99807 0.94177 0.81743 0.86171 1.24072 0.93431 1.00974 0.98216 1.23685 0.98584 0.83308 0.91600 0.84264 1.23706 0.79586 1.00574 1.01090 1.49148 1.10070 1.58750 1.15206 1.18083 0.84937 0.77264 0.84027 1.90728 1.17736 1.55818 1.81590 1.19825 0.93746 1.03257 0.94198 1.21463 1.01294 0.94323 0.90791 1.21219 0.92054 0.98478 0.97900 1.21438 0.94801 1.04531 0.87684 1.98400 1.86549 1.92996 1.22974 1.17331 0.78380 1.03361 0.93613 1.91548 1.30971 1.93362 1.94711 1.22735 0.96560 0.99285 0.97346 0.94727 0.98355 0.96007 0.89707 0.87697 0.87295 0.91620 0.82485 0.80031 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.99 10.56 21.65 0.23 -56.76 16 2 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 3 Si 0.97 44.49 29.55 68.60 2.03 46.51 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.23 -11.70 10.38 84.04 0.87 -10.83 16 8 H 0.10 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.62 -28.21 3.02 -648.50 -1.96 -30.17 16 10 C 0.19 8.83 4.76 87.16 0.42 9.25 16 11 C 0.10 3.73 5.25 46.93 0.25 3.98 16 12 H 0.12 4.28 8.03 -2.39 -0.02 4.26 16 13 C -0.13 -3.69 6.81 33.47 0.23 -3.46 16 14 C 0.13 4.31 5.53 46.94 0.26 4.57 16 15 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 16 C 0.07 2.17 4.23 87.16 0.37 2.54 16 17 N -0.60 -20.41 2.95 -774.83 -2.28 -22.69 16 18 C 0.57 19.63 7.85 86.77 0.68 20.31 16 19 O -0.58 -23.11 16.70 -3.91 -0.07 -23.17 16 20 C -0.11 -2.98 5.87 -20.09 -0.12 -3.10 16 21 C -0.06 -1.36 9.59 22.52 0.22 -1.14 16 22 C -0.08 -1.41 9.81 22.25 0.22 -1.20 16 23 C -0.06 -1.18 6.33 22.44 0.14 -1.04 16 24 Cl -0.04 -0.72 28.60 -2.72 -0.08 -0.80 16 25 C 0.09 2.23 7.27 22.36 0.16 2.39 16 26 F -0.13 -3.16 16.82 44.97 0.76 -2.40 16 27 C -0.14 -3.57 8.75 22.57 0.20 -3.37 16 28 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.00 -0.10 7.68 -2.39 -0.02 -0.12 16 30 H 0.02 1.18 7.46 -2.38 -0.02 1.16 16 31 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 2.30 6.88 -2.39 -0.02 2.28 16 34 H 0.07 2.19 6.86 -2.39 -0.02 2.18 16 35 H 0.16 3.39 7.66 -2.91 -0.02 3.37 16 36 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.18 4.45 2.81 -4.10 -0.01 4.44 16 Total: -1.00 -68.40 323.45 4.11 -64.30 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.12 Total: 9.57 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 4.36 Total: 15.62 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.01 Total: -109.62 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -68.40 4.11 -64.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.640 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds