Wall clock time and date at job start Tue Mar 31 2020 13:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47055 * 274.99383 * 3 2 1 5 5 H 1.48497 * 109.47506 * 34.99632 * 3 2 1 6 6 H 1.48505 * 109.47391 * 154.99910 * 3 2 1 7 7 C 1.38818 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00072 * 185.07098 * 7 2 1 9 9 N 1.36939 * 119.99565 * 4.80772 * 7 2 1 10 10 C 1.47859 * 126.94638 * 355.22022 * 9 7 2 11 11 C 1.56022 * 105.10636 * 181.98566 * 10 9 7 12 12 H 1.08992 * 116.25294 * 158.83704 * 11 10 9 13 13 C 1.57091 * 99.60419 * 32.80613 * 11 10 9 14 14 C 1.49290 * 126.94065 * 174.91318 * 9 7 2 15 15 H 1.08999 * 116.15003 * 15.85742 * 14 9 7 16 16 C 1.58430 * 103.70057 * 246.53927 * 14 9 7 17 17 N 1.47860 * 104.83254 * 288.54754 * 16 14 9 18 18 C 1.34775 * 126.94428 * 182.29996 * 17 16 14 19 19 O 1.21555 * 120.00283 * 184.68279 * 18 17 16 20 20 C 1.47864 * 120.00022 * 4.69140 * 18 17 16 21 21 C 1.39561 * 120.12489 * 352.18752 * 20 18 17 22 22 C 1.38175 * 119.85267 * 179.97438 * 21 20 18 23 23 F 1.35102 * 119.94400 * 180.02562 * 22 21 20 24 24 C 1.38565 * 120.10790 * 359.97438 * 22 21 20 25 25 C 1.38409 * 120.25660 * 0.02562 * 24 22 21 26 26 Cl 1.73600 * 119.92921 * 179.97438 * 25 24 22 27 27 C 1.38122 * 120.14341 * 359.74046 * 25 24 22 28 28 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.31896 * 300.89177 * 10 9 7 30 30 H 1.09000 * 110.31658 * 62.97792 * 10 9 7 31 31 H 1.08995 * 112.36465 * 64.27526 * 13 11 10 32 32 H 1.08999 * 112.36263 * 191.71772 * 13 11 10 33 33 H 1.09001 * 110.19312 * 169.85161 * 16 14 9 34 34 H 1.09003 * 110.78435 * 47.53926 * 16 14 9 35 35 H 1.08004 * 120.07466 * 359.95784 * 21 20 18 36 36 H 1.08000 * 119.87562 * 179.97438 * 24 22 21 37 37 H 1.08001 * 120.05003 * 180.25527 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0832 9 7 1.3291 -2.3860 -0.0983 10 6 -0.1381 -2.5686 -0.1140 11 6 -0.3551 -4.1117 -0.1903 12 1 -1.3264 -4.4790 0.1406 13 6 0.8938 -4.5930 0.6322 14 6 1.9179 -3.7526 -0.2185 15 1 2.9735 -3.8451 0.0373 16 6 1.4967 -4.2161 -1.6737 17 7 0.0421 -4.4661 -1.5851 18 6 -0.7628 -4.9216 -2.5655 19 8 -1.9614 -5.0015 -2.3799 20 6 -0.1877 -5.3246 -3.8668 21 6 1.1591 -5.0836 -4.1421 22 6 1.6908 -5.4629 -5.3597 23 9 2.9945 -5.2310 -5.6280 24 6 0.8894 -6.0817 -6.3056 25 6 -0.4469 -6.3229 -6.0373 26 17 -1.4434 -7.0981 -7.2289 27 6 -0.9881 -5.9524 -4.8218 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5789 -2.1692 0.7993 30 1 -0.5709 -2.0804 -0.9872 31 1 0.8534 -4.2726 1.6732 32 1 1.0622 -5.6660 0.5408 33 1 2.0224 -5.1320 -1.9438 34 1 1.7024 -3.4332 -2.4037 35 1 1.7843 -4.6014 -3.4051 36 1 1.3087 -6.3763 -7.2563 37 1 -2.0300 -6.1451 -4.6124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032645815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:23 Heat of formation + Delta-G solvation = 22.034035 kcal Electronic energy + Delta-G solvation = -25150.936699 eV Core-core repulsion = 21257.361676 eV Total energy + Delta-G solvation = -3893.575023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.13758 -40.59960 -39.08595 -37.66260 -36.66738 -33.91541 -32.27173 -30.98113 -30.66648 -28.96689 -28.62927 -25.62192 -24.72559 -23.24145 -22.91746 -20.95671 -19.97943 -19.18483 -17.99896 -17.07784 -16.80902 -16.48631 -15.95967 -15.91786 -15.69649 -15.21022 -14.67509 -14.49537 -13.99076 -13.81702 -13.57279 -13.39541 -13.13777 -12.62245 -12.26724 -12.05608 -11.81759 -11.68967 -11.51770 -11.39410 -11.33976 -11.11006 -10.93952 -10.72458 -10.66269 -10.26849 -10.13053 -9.81802 -9.68178 -9.28528 -8.99290 -8.76417 -8.18666 -7.00416 -5.84983 -3.19690 0.43721 0.74990 1.68943 2.67357 3.13355 3.33411 3.38492 3.41307 3.55969 3.91139 4.32591 4.35686 4.58359 4.68103 4.82257 4.90880 5.01800 5.11975 5.24982 5.42850 5.46125 5.48398 5.64443 5.66378 5.71964 5.74536 5.88110 5.96751 6.13367 6.27853 6.30003 6.40608 6.47872 6.54589 7.31644 7.41727 7.64924 7.85552 8.01817 8.33071 9.02091 9.63335 10.31213 11.27207 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.003604 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.842681 B = 7767.503885 C = 8271.661965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.100 3.900 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.143 3.857 15 H 0.111 0.889 16 C 0.065 3.935 17 N -0.595 5.595 18 C 0.571 3.429 19 O -0.542 6.542 20 C -0.079 4.079 21 C -0.149 4.149 22 C 0.107 3.893 23 F -0.129 7.129 24 C -0.131 4.131 25 C -0.019 4.019 26 Cl -0.054 7.054 27 C -0.066 4.066 28 H 0.255 0.745 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.181 0.819 36 H 0.148 0.852 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -14.381 -9.004 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.002 4.002 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.129 0.871 16 C -0.060 4.060 17 N -0.327 5.327 18 C 0.359 3.641 19 O -0.421 6.421 20 C -0.082 4.082 21 C -0.167 4.167 22 C 0.087 3.913 23 F -0.107 7.107 24 C -0.150 4.150 25 C -0.046 4.046 26 Cl -0.025 7.025 27 C -0.085 4.085 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.197 0.803 36 H 0.166 0.834 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.665 -14.190 -9.048 16.912 hybrid contribution 0.574 0.950 -0.482 1.210 sum 2.239 -13.240 -9.530 16.466 Atomic orbital electron populations 1.69918 1.05014 1.25487 1.55794 1.24846 0.95667 0.97805 1.01649 0.86109 0.78666 0.83448 0.77556 1.21564 1.21695 1.20508 1.19056 0.90819 0.82046 1.44573 0.90015 1.45269 1.01332 1.00062 1.85302 1.21971 0.84772 0.87052 1.01536 1.24390 0.98099 0.98887 0.78851 0.86612 1.24208 0.96461 0.98655 0.99657 1.23757 0.96646 0.86484 0.89772 0.87129 1.24224 0.80190 0.98947 1.02626 1.49026 1.09494 1.62150 1.12009 1.17556 0.85759 0.78121 0.82667 1.90770 1.13973 1.56144 1.81191 1.19767 0.92986 1.00132 0.95342 1.22934 0.96496 0.99806 0.97475 1.17304 0.79007 1.00583 0.94364 1.91552 1.32602 1.92498 1.94079 1.21120 0.92441 1.00841 1.00631 1.20410 0.91477 1.01024 0.91667 1.98388 1.68958 1.79204 1.55996 1.21201 1.01399 0.95627 0.90304 0.93472 0.92634 0.93011 0.89362 0.91464 0.91832 0.89983 0.80250 0.83425 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.02 10.58 55.49 0.59 -25.43 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 21.19 29.56 -169.99 -5.02 16.17 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.24 -6.06 10.37 -15.06 -0.16 -6.22 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -13.59 3.02 -154.63 -0.47 -14.05 16 10 C 0.17 3.93 4.75 -1.68 -0.01 3.93 16 11 C 0.10 1.81 5.18 -62.54 -0.32 1.49 16 12 H 0.12 2.03 8.07 -51.93 -0.42 1.61 16 13 C -0.15 -2.33 6.86 -22.10 -0.15 -2.49 16 14 C 0.14 2.44 5.63 -60.97 -0.34 2.10 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.07 1.02 4.37 -0.30 0.00 1.02 16 17 N -0.59 -10.37 2.95 -156.71 -0.46 -10.84 16 18 C 0.57 10.13 7.85 -12.32 -0.10 10.03 16 19 O -0.54 -11.07 16.74 5.32 0.09 -10.98 16 20 C -0.08 -1.15 5.87 -104.98 -0.62 -1.77 16 21 C -0.15 -1.96 8.71 -39.11 -0.34 -2.30 16 22 C 0.11 1.28 7.29 -39.48 -0.29 0.99 16 23 F -0.13 -1.56 17.26 2.25 0.04 -1.52 16 24 C -0.13 -1.39 9.80 -39.40 -0.39 -1.78 16 25 C -0.02 -0.21 6.31 -39.56 -0.25 -0.46 16 26 Cl -0.05 -0.55 28.95 -51.86 -1.50 -2.05 16 27 C -0.07 -0.86 9.37 -39.14 -0.37 -1.23 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.06 1.40 7.59 -51.93 -0.39 1.01 16 30 H 0.05 1.38 7.55 -51.93 -0.39 0.99 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.80 6.78 -51.93 -0.35 0.44 16 34 H 0.08 1.41 6.94 -51.93 -0.36 1.05 16 35 H 0.18 2.35 2.87 -53.05 -0.15 2.20 16 36 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.98 7.67 -52.49 -0.40 1.58 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -29.67 324.34 -8.99 -38.66 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.71 Total: 2.00 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -3.42 Total: 3.16 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.34 Total: -50.32 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.67 -8.99 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.693 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds