Wall clock time and date at job start Tue Mar 31 2020 13:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47055 * 274.99383 * 3 2 1 5 5 H 1.48497 * 109.47506 * 34.99632 * 3 2 1 6 6 H 1.48505 * 109.47391 * 154.99910 * 3 2 1 7 7 C 1.38818 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00072 * 185.07098 * 7 2 1 9 9 N 1.36939 * 119.99565 * 4.80772 * 7 2 1 10 10 C 1.47859 * 126.94638 * 355.22022 * 9 7 2 11 11 C 1.56022 * 105.10636 * 181.98566 * 10 9 7 12 12 H 1.08992 * 116.25294 * 158.83704 * 11 10 9 13 13 C 1.57091 * 99.60419 * 32.80613 * 11 10 9 14 14 C 1.49290 * 126.94065 * 174.91318 * 9 7 2 15 15 H 1.08999 * 116.15003 * 15.85742 * 14 9 7 16 16 C 1.58430 * 103.70057 * 246.53927 * 14 9 7 17 17 N 1.47860 * 104.83254 * 288.54754 * 16 14 9 18 18 C 1.34775 * 126.94428 * 182.29996 * 17 16 14 19 19 O 1.21555 * 120.00283 * 184.68279 * 18 17 16 20 20 C 1.47864 * 120.00022 * 4.69140 * 18 17 16 21 21 C 1.39561 * 120.12489 * 352.18752 * 20 18 17 22 22 C 1.38175 * 119.85267 * 179.97438 * 21 20 18 23 23 F 1.35102 * 119.94400 * 180.02562 * 22 21 20 24 24 C 1.38565 * 120.10790 * 359.97438 * 22 21 20 25 25 C 1.38409 * 120.25660 * 0.02562 * 24 22 21 26 26 Cl 1.73600 * 119.92921 * 179.97438 * 25 24 22 27 27 C 1.38122 * 120.14341 * 359.74046 * 25 24 22 28 28 H 0.97003 * 119.99756 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.31896 * 300.89177 * 10 9 7 30 30 H 1.09000 * 110.31658 * 62.97792 * 10 9 7 31 31 H 1.08995 * 112.36465 * 64.27526 * 13 11 10 32 32 H 1.08999 * 112.36263 * 191.71772 * 13 11 10 33 33 H 1.09001 * 110.19312 * 169.85161 * 16 14 9 34 34 H 1.09003 * 110.78435 * 47.53926 * 16 14 9 35 35 H 1.08004 * 120.07466 * 359.95784 * 21 20 18 36 36 H 1.08000 * 119.87562 * 179.97438 * 24 22 21 37 37 H 1.08001 * 120.05003 * 180.25527 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0832 9 7 1.3291 -2.3860 -0.0983 10 6 -0.1381 -2.5686 -0.1140 11 6 -0.3551 -4.1117 -0.1903 12 1 -1.3264 -4.4790 0.1406 13 6 0.8938 -4.5930 0.6322 14 6 1.9179 -3.7526 -0.2185 15 1 2.9735 -3.8451 0.0373 16 6 1.4967 -4.2161 -1.6737 17 7 0.0421 -4.4661 -1.5851 18 6 -0.7628 -4.9216 -2.5655 19 8 -1.9614 -5.0015 -2.3799 20 6 -0.1877 -5.3246 -3.8668 21 6 1.1591 -5.0836 -4.1421 22 6 1.6908 -5.4629 -5.3597 23 9 2.9945 -5.2310 -5.6280 24 6 0.8894 -6.0817 -6.3056 25 6 -0.4469 -6.3229 -6.0373 26 17 -1.4434 -7.0981 -7.2289 27 6 -0.9881 -5.9524 -4.8218 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5789 -2.1692 0.7993 30 1 -0.5709 -2.0804 -0.9872 31 1 0.8534 -4.2726 1.6732 32 1 1.0622 -5.6660 0.5408 33 1 2.0224 -5.1320 -1.9438 34 1 1.7024 -3.4332 -2.4037 35 1 1.7843 -4.6014 -3.4051 36 1 1.3087 -6.3763 -7.2563 37 1 -2.0300 -6.1451 -4.6124 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032645815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:22 Heat of formation + Delta-G solvation = 5.582064 kcal Electronic energy + Delta-G solvation = -25151.650110 eV Core-core repulsion = 21257.361676 eV Total energy + Delta-G solvation = -3894.288434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.07580 -41.93926 -40.28710 -38.99467 -37.57578 -35.60381 -33.79521 -32.28662 -31.72084 -30.44556 -30.22862 -27.14833 -26.23818 -24.61040 -23.97685 -22.29001 -21.46066 -20.63861 -19.34178 -18.43482 -18.20159 -17.45226 -17.29861 -17.06286 -16.88017 -16.53408 -16.24344 -15.77519 -15.52163 -15.07701 -14.92449 -14.60471 -14.25948 -13.88374 -13.68059 -13.45746 -13.26103 -13.16889 -12.89734 -12.77247 -12.71753 -12.47550 -12.22038 -12.21165 -12.13325 -11.99758 -11.71094 -11.53598 -11.20505 -10.70952 -10.27750 -9.96197 -9.63287 -8.89632 -7.85748 -5.20723 -0.58594 -0.22189 0.79538 1.47660 1.48545 1.50960 1.57410 1.81325 2.39781 2.48520 2.90926 3.21505 3.30668 3.40711 3.59641 3.72100 3.75339 3.82011 3.89749 3.98739 4.10087 4.18971 4.43891 4.45484 4.55149 4.65010 4.76826 4.79822 4.84539 4.92726 5.02180 5.12775 5.21272 5.40756 5.44731 5.53326 5.66484 6.09542 6.48417 6.94792 7.02635 7.70865 8.40722 9.25672 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.003604 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.842681 B = 7767.503885 C = 8271.661965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.294 1.294 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.098 0.902 9 N -0.616 5.616 10 C 0.184 3.816 11 C 0.103 3.897 12 H 0.118 0.882 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.142 0.858 16 C 0.073 3.927 17 N -0.599 5.599 18 C 0.566 3.434 19 O -0.579 6.579 20 C -0.096 4.096 21 C -0.147 4.147 22 C 0.108 3.892 23 F -0.127 7.127 24 C -0.112 4.112 25 C -0.017 4.017 26 Cl -0.039 7.039 27 C -0.068 4.068 28 H 0.243 0.757 29 H 0.018 0.982 30 H 0.000 1.000 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -16.683 -10.285 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.221 1.221 5 H -0.230 1.230 6 H -0.184 1.184 7 C -0.359 4.359 8 H 0.116 0.884 9 N -0.340 5.340 10 C 0.058 3.942 11 C 0.000 4.000 12 H 0.136 0.864 13 C -0.166 4.166 14 C 0.031 3.969 15 H 0.160 0.840 16 C -0.051 4.051 17 N -0.330 5.330 18 C 0.356 3.644 19 O -0.461 6.461 20 C -0.099 4.099 21 C -0.165 4.165 22 C 0.088 3.912 23 F -0.105 7.105 24 C -0.131 4.131 25 C -0.044 4.044 26 Cl -0.010 7.010 27 C -0.087 4.087 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.018 0.982 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.198 0.802 36 H 0.195 0.805 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.294 -16.543 -10.336 19.974 hybrid contribution -0.219 1.583 -0.169 1.607 sum 4.075 -14.960 -10.504 18.728 Atomic orbital electron populations 1.70158 1.06628 1.25130 1.58514 1.25644 0.96315 1.01126 1.03044 0.85124 0.78174 0.79565 0.76878 1.22109 1.23000 1.18383 1.19550 0.91658 0.83079 1.41607 0.88444 1.45512 1.01438 1.01842 1.85204 1.21557 0.85081 0.90149 0.97374 1.24233 0.99896 0.95303 0.80576 0.86444 1.24119 0.93339 1.00508 0.98658 1.24210 0.98441 0.83369 0.90910 0.84041 1.24170 0.79375 1.00518 1.01038 1.49081 1.10358 1.61925 1.11614 1.18066 0.85362 0.77404 0.83550 1.90739 1.15575 1.57811 1.81998 1.19463 0.93884 1.02269 0.94299 1.22827 0.95738 0.99725 0.98220 1.17257 0.79165 1.00640 0.94130 1.91564 1.32468 1.92505 1.93999 1.21398 0.91741 0.98778 1.01213 1.20397 0.91970 1.00704 0.91301 1.98401 1.68665 1.78802 1.55093 1.21202 1.01149 0.95550 0.90836 0.94753 0.96425 0.98210 0.89551 0.87594 0.87290 0.91623 0.80246 0.80540 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.34 10.58 21.65 0.23 -57.11 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.97 44.45 29.56 68.60 2.03 46.48 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.23 -11.77 10.37 84.03 0.87 -10.90 16 8 H 0.10 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.62 -28.19 3.02 -643.14 -1.94 -30.13 16 10 C 0.18 8.88 4.75 87.17 0.41 9.30 16 11 C 0.10 3.76 5.18 46.94 0.24 4.00 16 12 H 0.12 4.23 8.07 -2.39 -0.02 4.21 16 13 C -0.13 -3.64 6.86 33.60 0.23 -3.41 16 14 C 0.14 4.35 5.63 47.96 0.27 4.62 16 15 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 16 C 0.07 2.12 4.37 88.06 0.38 2.50 16 17 N -0.60 -20.58 2.95 -767.98 -2.27 -22.85 16 18 C 0.57 20.17 7.85 86.79 0.68 20.85 16 19 O -0.58 -24.39 16.74 -3.89 -0.07 -24.46 16 20 C -0.10 -2.71 5.87 -20.10 -0.12 -2.83 16 21 C -0.15 -3.56 8.71 22.57 0.20 -3.36 16 22 C 0.11 2.26 7.29 22.33 0.16 2.42 16 23 F -0.13 -2.66 17.26 44.97 0.78 -1.88 16 24 C -0.11 -2.00 9.80 22.39 0.22 -1.78 16 25 C -0.02 -0.34 6.31 22.28 0.14 -0.20 16 26 Cl -0.04 -0.68 28.95 -2.72 -0.08 -0.76 16 27 C -0.07 -1.69 9.37 22.55 0.21 -1.48 16 28 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.02 0.96 7.59 -2.39 -0.02 0.94 16 30 H 0.00 -0.02 7.55 -2.39 -0.02 -0.04 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 2.27 6.78 -2.39 -0.02 2.25 16 34 H 0.07 2.18 6.94 -2.39 -0.02 2.16 16 35 H 0.18 4.27 2.87 -3.44 -0.01 4.26 16 36 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.15 3.80 7.67 -2.91 -0.02 3.78 16 Total: -1.00 -68.54 324.34 4.18 -64.36 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.13 Total: 9.90 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 4.37 Total: 16.45 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.98 Total: -110.09 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.07 Total: -24.46 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -68.54 4.18 -64.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032645815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.942 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds