Wall clock time and date at job start Tue Mar 31 2020 13:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00386 * 2 1 4 4 H 1.48498 * 109.46950 * 270.00169 * 3 2 1 5 5 H 1.48494 * 109.46971 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47397 * 150.00162 * 3 2 1 7 7 C 1.38819 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.47863 * 126.94303 * 359.97438 * 9 7 2 11 11 C 1.56022 * 105.10218 * 182.02469 * 10 9 7 12 12 H 1.09003 * 116.24833 * 159.68453 * 11 10 9 13 13 C 1.57081 * 99.60637 * 32.80858 * 11 10 9 14 14 C 1.49246 * 126.85181 * 179.97438 * 9 7 2 15 15 H 1.08999 * 116.20631 * 15.78808 * 14 9 7 16 16 C 1.56011 * 104.11510 * 246.58045 * 14 9 7 17 17 N 1.47866 * 105.19606 * 288.91352 * 16 14 9 18 18 C 1.34774 * 126.94654 * 181.95643 * 17 16 14 19 19 O 1.21566 * 119.99946 * 174.72055 * 18 17 16 20 20 C 1.47773 * 119.99961 * 354.71435 * 18 17 16 21 21 C 1.39635 * 120.14483 * 317.12601 * 20 18 17 22 22 C 1.37890 * 119.91824 * 179.97438 * 21 20 18 23 23 C 1.38403 * 120.20773 * 359.97438 * 22 21 20 24 24 C 1.38471 * 120.28809 * 0.02562 * 23 22 21 25 25 F 1.35093 * 119.95647 * 179.97438 * 24 23 22 26 26 C 1.38380 * 120.08157 * 359.74177 * 24 23 22 27 27 Cl 1.73598 * 120.10450 * 180.25696 * 26 24 23 28 28 H 0.97004 * 119.99650 * 359.97438 * 1 2 3 29 29 H 1.09009 * 110.31859 * 63.12013 * 10 9 7 30 30 H 1.08996 * 110.31846 * 300.93269 * 10 9 7 31 31 H 1.08999 * 112.36781 * 64.27229 * 13 11 10 32 32 H 1.08999 * 112.36488 * 191.71393 * 13 11 10 33 33 H 1.09004 * 110.31742 * 169.95352 * 16 14 9 34 34 H 1.08998 * 110.31656 * 47.87211 * 16 14 9 35 35 H 1.08002 * 120.04030 * 0.02562 * 21 20 18 36 36 H 1.07996 * 119.90207 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.85769 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3639 -4.1103 0.0532 12 1 -1.3411 -4.4455 0.4010 13 6 0.8845 -4.5252 0.9117 14 6 1.9121 -3.7604 -0.0016 15 1 2.9668 -3.8333 0.2636 16 6 1.5076 -4.3460 -1.3899 17 7 0.0509 -4.5838 -1.3008 18 6 -0.7420 -5.1197 -2.2497 19 8 -1.9113 -5.3472 -2.0075 20 6 -0.1899 -5.4307 -3.5847 21 6 0.6638 -4.5258 -4.2187 22 6 1.1767 -4.8210 -5.4642 23 6 0.8484 -6.0120 -6.0880 24 6 0.0026 -6.9156 -5.4672 25 9 -0.3139 -8.0759 -6.0824 26 6 -0.5151 -6.6337 -4.2152 27 17 -1.5703 -7.7690 -3.4334 28 1 -0.4850 0.8401 0.0004 29 1 -0.5746 -2.1533 -0.9108 30 1 -0.5809 -2.0914 0.8778 31 1 0.8463 -4.1191 1.9224 32 1 1.0495 -5.6026 0.9099 33 1 2.0335 -5.2831 -1.5732 34 1 1.7263 -3.6291 -2.1813 35 1 0.9228 -3.5961 -3.7338 36 1 1.8367 -4.1207 -5.9544 37 1 1.2530 -6.2373 -7.0637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032650478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:26 Heat of formation + Delta-G solvation = 11.240164 kcal Electronic energy + Delta-G solvation = -25361.450045 eV Core-core repulsion = 21467.406965 eV Total energy + Delta-G solvation = -3894.043080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15363 -40.45972 -39.07928 -37.49315 -36.54926 -33.73290 -32.05857 -31.02428 -30.58102 -28.99937 -28.58974 -25.35910 -24.65674 -23.15608 -22.90109 -20.90887 -19.95012 -18.97491 -17.99009 -16.91377 -16.89312 -16.71216 -16.10677 -15.86071 -15.67271 -14.88083 -14.67301 -14.42654 -14.00756 -13.72376 -13.51876 -13.14759 -12.86222 -12.53019 -12.21938 -11.95928 -11.87279 -11.67374 -11.62310 -11.35865 -11.08144 -11.02186 -10.92368 -10.81231 -10.66979 -10.30282 -10.12911 -9.70378 -9.61988 -9.18900 -8.90589 -8.77101 -8.08901 -7.00165 -5.83357 -3.18296 0.54676 0.76768 1.92449 2.78354 3.11254 3.32449 3.37811 3.40532 3.43375 3.90419 4.35559 4.36010 4.61024 4.68808 4.90093 4.99590 5.11136 5.18661 5.30562 5.48728 5.50548 5.56243 5.66630 5.70840 5.80750 5.86192 5.97881 6.12578 6.22546 6.34550 6.36071 6.45586 6.52921 6.61063 7.35600 7.40382 7.64944 7.93416 8.03211 8.40736 9.03557 9.64508 10.32992 11.28640 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.003902 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.057665 B = 7174.249776 C = 7929.690648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.100 3.900 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.597 5.597 18 C 0.569 3.431 19 O -0.528 6.528 20 C -0.082 4.082 21 C -0.084 4.084 22 C -0.091 4.091 23 C -0.128 4.128 24 C 0.098 3.902 25 F -0.127 7.127 26 C -0.036 4.036 27 Cl -0.028 7.028 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -12.577 -8.661 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.002 4.002 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.330 5.330 18 C 0.356 3.644 19 O -0.405 6.405 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.109 4.109 23 C -0.147 4.147 24 C 0.078 3.922 25 F -0.105 7.105 26 C -0.064 4.064 27 Cl 0.001 6.999 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.969 -12.576 -8.529 15.482 hybrid contribution 0.270 0.658 -0.268 0.761 sum 3.239 -11.917 -8.797 15.163 Atomic orbital electron populations 1.69908 1.04964 1.25410 1.56224 1.24815 0.95656 0.97711 1.01908 0.86129 0.78609 0.83463 0.77571 1.21603 1.21670 1.20618 1.19045 0.90408 0.82026 1.44685 0.90110 1.45243 1.01297 0.99298 1.86278 1.21950 0.84725 0.86999 1.01459 1.24421 0.98013 0.97619 0.80159 0.86598 1.24191 0.96526 0.99027 0.99265 1.23221 0.96616 0.86267 0.90646 0.87401 1.23485 0.79730 0.99125 1.02355 1.49103 1.09434 1.59241 1.15264 1.17495 0.85670 0.78231 0.82981 1.90808 1.15992 1.53356 1.80374 1.19821 0.98860 0.93458 0.96461 1.21678 0.93917 0.99627 0.95037 1.21105 0.99200 0.96086 0.94502 1.21278 0.98112 0.93973 1.01333 1.17236 0.99805 0.84428 0.90721 1.91538 1.91447 1.45581 1.81971 1.20976 0.98393 0.93602 0.93472 1.98413 1.63363 1.58352 1.79735 0.93512 0.93402 0.92414 0.89627 0.91561 0.92686 0.90718 0.83023 0.83630 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.77 10.56 55.49 0.59 -25.18 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.23 -5.90 10.37 -15.06 -0.16 -6.05 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -13.51 3.02 -156.23 -0.47 -13.98 16 10 C 0.17 3.96 4.76 -1.68 -0.01 3.95 16 11 C 0.10 1.86 5.26 -62.53 -0.33 1.53 16 12 H 0.12 2.12 8.04 -51.93 -0.42 1.70 16 13 C -0.15 -2.44 6.81 -22.17 -0.15 -2.59 16 14 C 0.14 2.46 5.54 -62.45 -0.35 2.11 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C 0.08 1.24 5.28 -1.68 -0.01 1.23 16 17 N -0.60 -10.61 2.95 -157.88 -0.47 -11.08 16 18 C 0.57 10.42 7.09 -12.36 -0.09 10.34 16 19 O -0.53 -11.10 15.83 5.31 0.08 -11.01 16 20 C -0.08 -1.26 5.46 -104.95 -0.57 -1.83 16 21 C -0.08 -1.08 8.52 -39.19 -0.33 -1.41 16 22 C -0.09 -0.89 10.03 -39.65 -0.40 -1.28 16 23 C -0.13 -1.24 10.02 -39.43 -0.39 -1.64 16 24 C 0.10 1.22 7.27 -39.44 -0.29 0.93 16 25 F -0.13 -1.59 16.83 2.25 0.04 -1.55 16 26 C -0.04 -0.52 6.34 -39.00 -0.25 -0.77 16 27 Cl -0.03 -0.43 26.60 -51.86 -1.38 -1.81 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.25 7.68 -51.92 -0.40 0.86 16 30 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.23 5.89 -51.93 -0.31 0.92 16 35 H 0.15 2.05 6.04 -52.49 -0.32 1.73 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -30.23 324.82 -9.06 -39.29 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -3.91 Total: 0.25 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -3.42 Total: 4.33 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.35 Total: -50.24 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.38 Total: -1.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.23 -9.06 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032650478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.528 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds