Wall clock time and date at job start Tue Mar 31 2020 13:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00386 * 2 1 4 4 H 1.48498 * 109.46950 * 270.00169 * 3 2 1 5 5 H 1.48494 * 109.46971 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47397 * 150.00162 * 3 2 1 7 7 C 1.38819 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.47863 * 126.94303 * 359.97438 * 9 7 2 11 11 C 1.56022 * 105.10218 * 182.02469 * 10 9 7 12 12 H 1.09003 * 116.24833 * 159.68453 * 11 10 9 13 13 C 1.57081 * 99.60637 * 32.80858 * 11 10 9 14 14 C 1.49246 * 126.85181 * 179.97438 * 9 7 2 15 15 H 1.08999 * 116.20631 * 15.78808 * 14 9 7 16 16 C 1.56011 * 104.11510 * 246.58045 * 14 9 7 17 17 N 1.47866 * 105.19606 * 288.91352 * 16 14 9 18 18 C 1.34774 * 126.94654 * 181.95643 * 17 16 14 19 19 O 1.21566 * 119.99946 * 174.72055 * 18 17 16 20 20 C 1.47773 * 119.99961 * 354.71435 * 18 17 16 21 21 C 1.39635 * 120.14483 * 317.12601 * 20 18 17 22 22 C 1.37890 * 119.91824 * 179.97438 * 21 20 18 23 23 C 1.38403 * 120.20773 * 359.97438 * 22 21 20 24 24 C 1.38471 * 120.28809 * 0.02562 * 23 22 21 25 25 F 1.35093 * 119.95647 * 179.97438 * 24 23 22 26 26 C 1.38380 * 120.08157 * 359.74177 * 24 23 22 27 27 Cl 1.73598 * 120.10450 * 180.25696 * 26 24 23 28 28 H 0.97004 * 119.99650 * 359.97438 * 1 2 3 29 29 H 1.09009 * 110.31859 * 63.12013 * 10 9 7 30 30 H 1.08996 * 110.31846 * 300.93269 * 10 9 7 31 31 H 1.08999 * 112.36781 * 64.27229 * 13 11 10 32 32 H 1.08999 * 112.36488 * 191.71393 * 13 11 10 33 33 H 1.09004 * 110.31742 * 169.95352 * 16 14 9 34 34 H 1.08998 * 110.31656 * 47.87211 * 16 14 9 35 35 H 1.08002 * 120.04030 * 0.02562 * 21 20 18 36 36 H 1.07996 * 119.90207 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.85769 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3639 -4.1103 0.0532 12 1 -1.3411 -4.4455 0.4010 13 6 0.8845 -4.5252 0.9117 14 6 1.9121 -3.7604 -0.0016 15 1 2.9668 -3.8333 0.2636 16 6 1.5076 -4.3460 -1.3899 17 7 0.0509 -4.5838 -1.3008 18 6 -0.7420 -5.1197 -2.2497 19 8 -1.9113 -5.3472 -2.0075 20 6 -0.1899 -5.4307 -3.5847 21 6 0.6638 -4.5258 -4.2187 22 6 1.1767 -4.8210 -5.4642 23 6 0.8484 -6.0120 -6.0880 24 6 0.0026 -6.9156 -5.4672 25 9 -0.3139 -8.0759 -6.0824 26 6 -0.5151 -6.6337 -4.2152 27 17 -1.5703 -7.7690 -3.4334 28 1 -0.4850 0.8401 0.0004 29 1 -0.5746 -2.1533 -0.9108 30 1 -0.5809 -2.0914 0.8778 31 1 0.8463 -4.1191 1.9224 32 1 1.0495 -5.6026 0.9099 33 1 2.0335 -5.2831 -1.5732 34 1 1.7263 -3.6291 -2.1813 35 1 0.9228 -3.5961 -3.7338 36 1 1.8367 -4.1207 -5.9544 37 1 1.2530 -6.2373 -7.0637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032650478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:25 Heat of formation + Delta-G solvation = -5.861402 kcal Electronic energy + Delta-G solvation = -25362.191625 eV Core-core repulsion = 21467.406965 eV Total energy + Delta-G solvation = -3894.784660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.09976 -41.83056 -40.28342 -38.84891 -37.64154 -35.47047 -33.57036 -32.22656 -31.64697 -30.49748 -30.21819 -26.98816 -26.02851 -24.57954 -23.86925 -22.30320 -21.44062 -20.40985 -19.37782 -18.37331 -17.99300 -17.80248 -17.39354 -17.15886 -16.87877 -16.32510 -16.08478 -15.70260 -15.40570 -15.05601 -14.90925 -14.33046 -14.04106 -13.84806 -13.70774 -13.40126 -13.21456 -12.99826 -12.86190 -12.80425 -12.67562 -12.64600 -12.27833 -12.17110 -12.15834 -12.01602 -11.81921 -11.50356 -11.04865 -10.69888 -10.18543 -9.88150 -9.55749 -8.89137 -7.81671 -5.17282 -0.44743 -0.17930 0.86324 1.50569 1.51563 1.56555 1.60175 1.81361 2.35537 2.51287 2.90402 3.28309 3.36464 3.43596 3.66745 3.71137 3.81680 3.88819 4.01430 4.04527 4.20689 4.24168 4.54591 4.59017 4.64275 4.77739 4.84103 4.94051 4.98973 5.01952 5.12371 5.13988 5.24467 5.47642 5.52202 5.55213 5.68272 6.11855 6.54237 7.00287 7.05735 7.73844 8.43876 9.29567 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.003902 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.057665 B = 7174.249776 C = 7929.690648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.227 4.227 8 H 0.098 0.902 9 N -0.614 5.614 10 C 0.189 3.811 11 C 0.101 3.899 12 H 0.113 0.887 13 C -0.131 4.131 14 C 0.138 3.862 15 H 0.138 0.862 16 C 0.086 3.914 17 N -0.600 5.600 18 C 0.564 3.436 19 O -0.567 6.567 20 C -0.104 4.104 21 C -0.087 4.087 22 C -0.072 4.072 23 C -0.104 4.104 24 C 0.093 3.907 25 F -0.129 7.129 26 C -0.052 4.052 27 Cl -0.047 7.047 28 H 0.243 0.757 29 H 0.001 0.999 30 H 0.019 0.981 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.142 0.858 36 H 0.186 0.814 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -13.825 -10.489 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.188 1.188 7 C -0.356 4.356 8 H 0.115 0.885 9 N -0.338 5.338 10 C 0.063 3.937 11 C -0.001 4.001 12 H 0.131 0.869 13 C -0.170 4.170 14 C 0.032 3.968 15 H 0.156 0.844 16 C -0.038 4.038 17 N -0.332 5.332 18 C 0.353 3.647 19 O -0.447 6.447 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.089 4.089 23 C -0.122 4.122 24 C 0.073 3.927 25 F -0.107 7.107 26 C -0.081 4.081 27 Cl -0.018 7.018 28 H 0.052 0.948 29 H 0.019 0.981 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.203 0.797 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.308 -13.869 -10.362 18.426 hybrid contribution -0.705 1.008 0.227 1.251 sum 5.603 -12.861 -10.135 17.307 Atomic orbital electron populations 1.70149 1.06611 1.25097 1.58795 1.25603 0.96273 1.01003 1.03152 0.85133 0.77789 0.79462 0.77273 1.21560 1.23258 1.18787 1.19534 0.91289 0.82926 1.41863 0.88472 1.45466 1.01297 1.00995 1.86071 1.21516 0.85097 0.89647 0.97446 1.24232 0.99416 0.94520 0.81973 0.86906 1.24098 0.93913 1.00688 0.98282 1.23622 0.98202 0.83273 0.91739 0.84417 1.23428 0.78703 1.00654 1.01028 1.49153 1.10331 1.58946 1.14775 1.18035 0.85232 0.77412 0.84026 1.90772 1.17639 1.55009 1.81288 1.19584 1.01014 0.94865 0.95342 1.21682 0.93830 0.98681 0.96369 1.21508 0.98160 0.96460 0.92793 1.21744 0.95726 0.92510 1.02247 1.17452 1.00246 0.84960 0.90071 1.91538 1.91562 1.45832 1.81774 1.21114 0.99026 0.93392 0.94526 1.98399 1.64187 1.58941 1.80304 0.94773 0.98053 0.96278 0.89907 0.88384 0.89054 0.91197 0.84080 0.79686 0.79474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.39 10.56 21.65 0.23 -56.16 16 2 C -0.07 -3.63 5.49 84.86 0.47 -3.16 16 3 Si 0.97 43.39 29.55 68.60 2.03 45.42 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.31 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.23 -11.38 10.37 84.04 0.87 -10.51 16 8 H 0.10 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.61 -27.76 3.02 -648.20 -1.96 -29.71 16 10 C 0.19 9.05 4.76 87.17 0.42 9.47 16 11 C 0.10 3.84 5.26 46.93 0.25 4.09 16 12 H 0.11 4.31 8.04 -2.39 -0.02 4.29 16 13 C -0.13 -3.99 6.81 33.55 0.23 -3.76 16 14 C 0.14 4.47 5.54 47.02 0.26 4.73 16 15 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 16 C 0.09 2.54 5.28 87.16 0.46 3.00 16 17 N -0.60 -21.18 2.95 -771.70 -2.27 -23.45 16 18 C 0.56 20.92 7.09 86.77 0.61 21.53 16 19 O -0.57 -24.77 15.83 -3.93 -0.06 -24.83 16 20 C -0.10 -3.11 5.46 -20.08 -0.11 -3.22 16 21 C -0.09 -2.04 8.52 22.52 0.19 -1.85 16 22 C -0.07 -1.08 10.03 22.23 0.22 -0.85 16 23 C -0.10 -1.52 10.02 22.36 0.22 -1.30 16 24 C 0.09 2.06 7.27 22.36 0.16 2.22 16 25 F -0.13 -2.92 16.83 44.97 0.76 -2.17 16 26 C -0.05 -1.46 6.34 22.65 0.14 -1.32 16 27 Cl -0.05 -1.47 26.60 -2.72 -0.07 -1.54 16 28 H 0.24 14.22 8.31 -92.70 -0.77 13.45 16 29 H 0.00 0.07 7.68 -2.38 -0.02 0.05 16 30 H 0.02 1.04 7.46 -2.39 -0.02 1.03 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.07 2.17 5.89 -2.39 -0.01 2.16 16 35 H 0.14 3.63 6.04 -2.91 -0.02 3.62 16 36 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -70.70 324.82 4.16 -66.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.12 Total: 6.85 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 4.40 Total: 19.07 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.00 Total: -109.32 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.76 Total: -2.17 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.54 kcal Total: -70.70 4.16 -66.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032650478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.675 kcal (2) G-P(sol) polarization free energy of solvation -70.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds