Wall clock time and date at job start Tue Mar 31 2020 13:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48507 * 109.46873 * 274.98790 * 3 2 1 5 5 H 1.48500 * 109.47382 * 34.98698 * 3 2 1 6 6 H 1.48493 * 109.46993 * 154.99123 * 3 2 1 7 7 C 1.38807 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00746 * 185.65886 * 7 2 1 9 9 N 1.36946 * 119.99426 * 5.66560 * 7 2 1 10 10 C 1.47860 * 126.94673 * 354.34521 * 9 7 2 11 11 C 1.56015 * 105.10524 * 182.03994 * 10 9 7 12 12 H 1.09001 * 116.25253 * 158.83727 * 11 10 9 13 13 C 1.57080 * 99.60947 * 32.80330 * 11 10 9 14 14 C 1.49288 * 126.94118 * 174.39215 * 9 7 2 15 15 H 1.09002 * 116.15325 * 15.79722 * 14 9 7 16 16 C 1.56026 * 104.09050 * 246.66185 * 14 9 7 17 17 N 1.49297 * 104.09340 * 287.92012 * 11 10 9 18 18 C 1.34770 * 126.94504 * 247.56050 * 17 11 10 19 19 O 1.21580 * 120.00005 * 354.69916 * 18 17 11 20 20 C 1.47649 * 120.00376 * 174.69585 * 18 17 11 21 21 C 1.39706 * 120.12533 * 318.49304 * 20 18 17 22 22 C 1.37779 * 119.89092 * 179.97438 * 21 20 18 23 23 C 1.38722 * 120.15495 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.86853 * 179.97438 * 23 22 21 25 25 C 1.38565 * 120.26361 * 359.97438 * 23 22 21 26 26 C 1.38037 * 120.10153 * 359.72226 * 25 23 22 27 27 Cl 1.73600 * 120.07466 * 180.27756 * 26 25 23 28 28 H 0.97006 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.31935 * 63.13237 * 10 9 7 30 30 H 1.09007 * 110.39896 * 300.98765 * 10 9 7 31 31 H 1.09009 * 112.36714 * 64.27325 * 13 11 10 32 32 H 1.08998 * 112.37315 * 191.71709 * 13 11 10 33 33 H 1.08997 * 110.31491 * 47.66997 * 16 14 9 34 34 H 1.08998 * 110.31574 * 169.75978 * 16 14 9 35 35 H 1.08006 * 120.05484 * 359.97438 * 21 20 18 36 36 H 1.07994 * 119.91728 * 180.02562 * 22 21 20 37 37 H 1.07995 * 119.94295 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3949 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0863 -1.2044 0.0928 9 7 1.3306 -2.3852 -0.1160 10 6 -0.1364 -2.5693 -0.1341 11 6 -0.3515 -4.1114 -0.2322 12 1 -1.3224 -4.4845 0.0937 13 6 0.8980 -4.6028 0.5831 14 6 1.9210 -3.7498 -0.2495 15 1 2.9756 -3.8445 0.0095 16 6 1.5216 -4.1973 -1.6899 17 7 0.0458 -4.4456 -1.6320 18 6 -0.7614 -4.8729 -2.6230 19 8 -1.9307 -5.1143 -2.3932 20 6 -0.2260 -5.0480 -3.9878 21 6 0.6533 -4.1031 -4.5225 22 6 1.1505 -4.2716 -5.7964 23 6 0.7796 -5.3765 -6.5488 24 9 1.2702 -5.5356 -7.7974 25 6 -0.0920 -6.3175 -6.0247 26 6 -0.5917 -6.1627 -4.7473 27 17 -1.6781 -7.3458 -4.0888 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5698 -2.0708 -1.0012 30 1 -0.5792 -2.1831 0.7841 31 1 0.8574 -4.2972 1.6287 32 1 1.0677 -5.6742 0.4766 33 1 1.7372 -3.4043 -2.4060 34 1 2.0528 -5.1087 -1.9640 35 1 0.9428 -3.2421 -3.9383 36 1 1.8305 -3.5417 -6.2101 37 1 -0.3770 -7.1759 -6.6149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032763583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:28 Heat of formation + Delta-G solvation = 9.702490 kcal Electronic energy + Delta-G solvation = -25274.981869 eV Core-core repulsion = 21380.872110 eV Total energy + Delta-G solvation = -3894.109759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22936 -40.38296 -39.07557 -37.45409 -36.53761 -33.66892 -32.01677 -31.15034 -30.61506 -28.93608 -28.59440 -25.33666 -24.40045 -23.29724 -23.00333 -20.84499 -19.90989 -18.89261 -17.99892 -17.63010 -16.88036 -16.47448 -15.96466 -15.77755 -15.35666 -14.88703 -14.63373 -14.18569 -14.07163 -13.81147 -13.67166 -13.28727 -13.02514 -12.86513 -12.23710 -11.94522 -11.77308 -11.51786 -11.48522 -11.33617 -11.09262 -11.05325 -10.92531 -10.79910 -10.66527 -10.29830 -10.12209 -9.71584 -9.59304 -9.26858 -8.90734 -8.75730 -8.08272 -6.99277 -5.84199 -3.18595 0.50827 0.80338 1.89296 2.77122 3.16883 3.32630 3.38021 3.40952 3.45072 3.91818 4.35948 4.41019 4.50562 4.64042 4.92406 5.00171 5.12418 5.15850 5.28961 5.49570 5.53021 5.57683 5.60322 5.71594 5.76858 5.86057 5.91020 6.12001 6.22187 6.33575 6.35528 6.45022 6.52693 6.60508 7.33844 7.43619 7.65755 7.94620 8.03307 8.44272 9.03398 9.64476 10.33508 11.28046 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.004150 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.550432 B = 6745.457930 C = 7846.346245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.114 0.886 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.081 3.919 17 N -0.602 5.602 18 C 0.572 3.428 19 O -0.530 6.530 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.153 4.153 23 C 0.126 3.874 24 F -0.131 7.131 25 C -0.158 4.158 26 C 0.032 3.968 27 Cl -0.033 7.033 28 H 0.255 0.745 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -12.719 -9.140 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.044 4.044 17 N -0.335 5.335 18 C 0.359 3.641 19 O -0.408 6.408 20 C -0.124 4.124 21 C -0.063 4.063 22 C -0.172 4.172 23 C 0.107 3.893 24 F -0.110 7.110 25 C -0.177 4.177 26 C 0.004 3.996 27 Cl -0.004 7.004 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.099 -12.689 -9.047 15.725 hybrid contribution 0.428 0.873 -0.401 1.052 sum 2.527 -11.816 -9.448 15.338 Atomic orbital electron populations 1.69926 1.04987 1.25416 1.55967 1.24829 0.95637 0.97707 1.01823 0.86133 0.78694 0.83583 0.77522 1.21609 1.21736 1.20549 1.19047 0.90881 0.82099 1.44209 0.90105 1.45259 1.01272 1.00173 1.85422 1.21957 0.84780 0.87166 1.01313 1.24341 0.98004 0.98726 0.79231 0.86808 1.24151 0.96590 0.98575 0.99688 1.23185 0.96610 0.86540 0.90462 0.87398 1.23825 0.79176 0.99239 1.02140 1.49523 1.09375 1.63618 1.11015 1.17435 0.85490 0.77978 0.83149 1.90808 1.16030 1.51267 1.82696 1.19996 1.00425 0.95696 0.96281 1.21472 0.92195 0.98208 0.94436 1.21222 1.03068 0.97975 0.94946 1.17639 0.95666 0.95570 0.80463 1.91532 1.85932 1.95451 1.38066 1.20870 1.00272 1.01431 0.95136 1.20601 0.94365 0.91686 0.92972 1.98417 1.61492 1.55029 1.85437 0.93515 0.93125 0.92841 0.89635 0.91548 0.90713 0.92491 0.82630 0.83418 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 10.60 55.49 0.59 -25.20 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 20.93 29.56 -169.99 -5.02 15.90 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.23 -5.93 10.36 -15.06 -0.16 -6.08 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.60 -13.50 3.02 -156.34 -0.47 -13.98 16 10 C 0.17 3.94 4.76 -1.68 -0.01 3.93 16 11 C 0.10 1.84 5.20 -62.55 -0.33 1.51 16 12 H 0.11 2.07 8.04 -51.93 -0.42 1.65 16 13 C -0.15 -2.41 6.82 -22.30 -0.15 -2.56 16 14 C 0.14 2.44 5.53 -62.55 -0.35 2.09 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.08 1.28 5.38 -0.60 0.00 1.27 16 17 N -0.60 -10.62 3.01 -156.39 -0.47 -11.09 16 18 C 0.57 10.33 7.13 -12.42 -0.09 10.25 16 19 O -0.53 -10.98 15.75 5.30 0.08 -10.89 16 20 C -0.12 -1.80 5.51 -104.94 -0.58 -2.38 16 21 C -0.04 -0.58 8.57 -39.20 -0.34 -0.92 16 22 C -0.15 -1.69 10.01 -39.57 -0.40 -2.08 16 23 C 0.13 1.40 7.31 -39.28 -0.29 1.12 16 24 F -0.13 -1.43 17.26 2.25 0.04 -1.40 16 25 C -0.16 -1.77 9.79 -39.53 -0.39 -2.16 16 26 C 0.03 0.43 6.33 -39.09 -0.25 0.18 16 27 Cl -0.03 -0.46 26.89 -51.86 -1.39 -1.86 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 1.33 7.54 -51.93 -0.39 0.94 16 30 H 0.05 1.36 7.62 -51.93 -0.40 0.96 16 31 H 0.09 1.40 8.14 -51.92 -0.42 0.97 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.23 5.89 -51.93 -0.31 0.93 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.16 2.14 5.92 -52.48 -0.31 1.83 16 36 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -29.70 325.44 -9.06 -38.76 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.90 Total: 0.84 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.41 Total: 4.00 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.35 Total: -50.26 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.39 Total: -1.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.70 -9.06 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032763583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.463 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds