Wall clock time and date at job start Tue Mar 31 2020 13:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48507 * 109.46873 * 274.98790 * 3 2 1 5 5 H 1.48500 * 109.47382 * 34.98698 * 3 2 1 6 6 H 1.48493 * 109.46993 * 154.99123 * 3 2 1 7 7 C 1.38807 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00746 * 185.65886 * 7 2 1 9 9 N 1.36946 * 119.99426 * 5.66560 * 7 2 1 10 10 C 1.47860 * 126.94673 * 354.34521 * 9 7 2 11 11 C 1.56015 * 105.10524 * 182.03994 * 10 9 7 12 12 H 1.09001 * 116.25253 * 158.83727 * 11 10 9 13 13 C 1.57080 * 99.60947 * 32.80330 * 11 10 9 14 14 C 1.49288 * 126.94118 * 174.39215 * 9 7 2 15 15 H 1.09002 * 116.15325 * 15.79722 * 14 9 7 16 16 C 1.56026 * 104.09050 * 246.66185 * 14 9 7 17 17 N 1.49297 * 104.09340 * 287.92012 * 11 10 9 18 18 C 1.34770 * 126.94504 * 247.56050 * 17 11 10 19 19 O 1.21580 * 120.00005 * 354.69916 * 18 17 11 20 20 C 1.47649 * 120.00376 * 174.69585 * 18 17 11 21 21 C 1.39706 * 120.12533 * 318.49304 * 20 18 17 22 22 C 1.37779 * 119.89092 * 179.97438 * 21 20 18 23 23 C 1.38722 * 120.15495 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.86853 * 179.97438 * 23 22 21 25 25 C 1.38565 * 120.26361 * 359.97438 * 23 22 21 26 26 C 1.38037 * 120.10153 * 359.72226 * 25 23 22 27 27 Cl 1.73600 * 120.07466 * 180.27756 * 26 25 23 28 28 H 0.97006 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.31935 * 63.13237 * 10 9 7 30 30 H 1.09007 * 110.39896 * 300.98765 * 10 9 7 31 31 H 1.09009 * 112.36714 * 64.27325 * 13 11 10 32 32 H 1.08998 * 112.37315 * 191.71709 * 13 11 10 33 33 H 1.08997 * 110.31491 * 47.66997 * 16 14 9 34 34 H 1.08998 * 110.31574 * 169.75978 * 16 14 9 35 35 H 1.08006 * 120.05484 * 359.97438 * 21 20 18 36 36 H 1.07994 * 119.91728 * 180.02562 * 22 21 20 37 37 H 1.07995 * 119.94295 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3949 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0863 -1.2044 0.0928 9 7 1.3306 -2.3852 -0.1160 10 6 -0.1364 -2.5693 -0.1341 11 6 -0.3515 -4.1114 -0.2322 12 1 -1.3224 -4.4845 0.0937 13 6 0.8980 -4.6028 0.5831 14 6 1.9210 -3.7498 -0.2495 15 1 2.9756 -3.8445 0.0095 16 6 1.5216 -4.1973 -1.6899 17 7 0.0458 -4.4456 -1.6320 18 6 -0.7614 -4.8729 -2.6230 19 8 -1.9307 -5.1143 -2.3932 20 6 -0.2260 -5.0480 -3.9878 21 6 0.6533 -4.1031 -4.5225 22 6 1.1505 -4.2716 -5.7964 23 6 0.7796 -5.3765 -6.5488 24 9 1.2702 -5.5356 -7.7974 25 6 -0.0920 -6.3175 -6.0247 26 6 -0.5917 -6.1627 -4.7473 27 17 -1.6781 -7.3458 -4.0888 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5698 -2.0708 -1.0012 30 1 -0.5792 -2.1831 0.7841 31 1 0.8574 -4.2972 1.6287 32 1 1.0677 -5.6742 0.4766 33 1 1.7372 -3.4043 -2.4060 34 1 2.0528 -5.1087 -1.9640 35 1 0.9428 -3.2421 -3.9383 36 1 1.8305 -3.5417 -6.2101 37 1 -0.3770 -7.1759 -6.6149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032763583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:28 Heat of formation + Delta-G solvation = -6.561498 kcal Electronic energy + Delta-G solvation = -25275.687128 eV Core-core repulsion = 21380.872110 eV Total energy + Delta-G solvation = -3894.815018 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.11345 -41.73599 -40.29908 -38.82047 -37.57141 -35.41083 -33.52507 -32.22778 -31.84936 -30.42393 -30.21602 -26.97830 -25.83268 -24.38757 -24.26655 -22.23428 -21.39626 -20.34525 -19.23414 -18.85518 -18.15476 -17.86636 -17.26267 -16.85905 -16.75232 -16.14603 -15.91965 -15.76809 -15.25161 -15.17416 -14.82367 -14.48662 -14.25813 -14.11167 -13.79435 -13.43901 -13.34190 -13.07672 -12.82123 -12.70560 -12.51698 -12.49138 -12.23234 -12.16120 -12.13040 -12.00344 -11.79889 -11.50969 -11.03013 -10.69514 -10.23167 -9.93100 -9.53626 -8.88051 -7.83109 -5.17913 -0.52068 -0.14104 0.87384 1.49888 1.50110 1.56674 1.59321 1.84841 2.31707 2.50537 2.97121 3.27275 3.35402 3.42553 3.52237 3.77461 3.79394 3.90528 3.96187 4.04629 4.16066 4.23048 4.52852 4.57249 4.62664 4.72482 4.80505 4.89199 4.95508 4.97237 5.02796 5.14809 5.25228 5.46478 5.47838 5.56392 5.68719 6.11929 6.56633 7.04638 7.05605 7.73507 8.44133 9.28443 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.004150 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.550432 B = 6745.457930 C = 7846.346245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.291 1.291 5 H -0.305 1.305 6 H -0.262 1.262 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.614 5.614 10 C 0.187 3.813 11 C 0.102 3.898 12 H 0.112 0.888 13 C -0.130 4.130 14 C 0.137 3.863 15 H 0.138 0.862 16 C 0.088 3.912 17 N -0.605 5.605 18 C 0.568 3.432 19 O -0.566 6.566 20 C -0.139 4.139 21 C -0.046 4.046 22 C -0.140 4.140 23 C 0.136 3.864 24 F -0.125 7.125 25 C -0.146 4.146 26 C 0.024 3.976 27 Cl -0.042 7.042 28 H 0.243 0.757 29 H 0.004 0.996 30 H 0.014 0.986 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -14.440 -10.608 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.186 1.186 7 C -0.356 4.356 8 H 0.114 0.886 9 N -0.339 5.339 10 C 0.061 3.939 11 C -0.001 4.001 12 H 0.130 0.870 13 C -0.169 4.169 14 C 0.031 3.969 15 H 0.156 0.844 16 C -0.035 4.035 17 N -0.337 5.337 18 C 0.357 3.643 19 O -0.447 6.447 20 C -0.143 4.143 21 C -0.065 4.065 22 C -0.158 4.158 23 C 0.116 3.884 24 F -0.104 7.104 25 C -0.165 4.165 26 C -0.004 4.004 27 Cl -0.013 7.013 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.825 -14.454 -10.524 18.519 hybrid contribution -0.367 1.357 -0.011 1.405 sum 4.458 -13.097 -10.535 17.390 Atomic orbital electron populations 1.70161 1.06611 1.25093 1.58605 1.25603 0.96248 1.00963 1.03116 0.85147 0.78092 0.79669 0.76970 1.21848 1.23231 1.18578 1.19524 0.91679 0.83042 1.41377 0.88561 1.45487 1.01323 1.01853 1.85232 1.21537 0.85106 0.89906 0.97323 1.24152 0.99489 0.95487 0.81012 0.87017 1.24056 0.93864 1.00183 0.98793 1.23592 0.98223 0.83538 0.91585 0.84445 1.23763 0.78210 1.00790 1.00756 1.49582 1.10275 1.63364 1.10506 1.17943 0.85058 0.77105 0.84227 1.90776 1.17520 1.52886 1.83486 1.19813 1.02179 0.97362 0.94965 1.21341 0.92306 0.97512 0.95318 1.21409 1.02456 0.98219 0.93763 1.17630 0.95058 0.95232 0.80466 1.91560 1.85745 1.95372 1.37684 1.21065 0.99276 1.02029 0.94149 1.20656 0.94692 0.91345 0.93686 1.98412 1.61901 1.55213 1.85730 0.94767 0.97815 0.96757 0.89913 0.88182 0.91439 0.88647 0.83644 0.80862 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.51 10.60 21.65 0.23 -56.28 16 2 C -0.07 -3.58 5.49 84.86 0.47 -3.12 16 3 Si 0.97 43.65 29.56 68.60 2.03 45.68 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.23 -11.44 10.36 84.03 0.87 -10.57 16 8 H 0.10 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.61 -27.79 3.02 -648.55 -1.96 -29.75 16 10 C 0.19 8.95 4.76 87.16 0.41 9.37 16 11 C 0.10 3.80 5.20 46.93 0.24 4.04 16 12 H 0.11 4.19 8.04 -2.39 -0.02 4.18 16 13 C -0.13 -3.88 6.82 33.46 0.23 -3.65 16 14 C 0.14 4.40 5.53 46.93 0.26 4.66 16 15 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 16 C 0.09 2.58 5.38 86.79 0.47 3.05 16 17 N -0.60 -21.01 3.01 -766.98 -2.31 -23.32 16 18 C 0.57 20.49 7.13 86.73 0.62 21.11 16 19 O -0.57 -23.96 15.75 -3.97 -0.06 -24.03 16 20 C -0.14 -4.04 5.51 -20.07 -0.11 -4.15 16 21 C -0.05 -1.13 8.57 22.52 0.19 -0.94 16 22 C -0.14 -2.65 10.01 22.28 0.22 -2.43 16 23 C 0.14 2.55 7.31 22.46 0.16 2.72 16 24 F -0.13 -2.26 17.26 44.97 0.78 -1.49 16 25 C -0.15 -2.86 9.79 22.30 0.22 -2.64 16 26 C 0.02 0.62 6.33 22.59 0.14 0.76 16 27 Cl -0.04 -1.13 26.89 -2.72 -0.07 -1.20 16 28 H 0.24 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.00 0.21 7.54 -2.39 -0.02 0.19 16 30 H 0.01 0.78 7.62 -2.38 -0.02 0.76 16 31 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.12 5.89 -2.39 -0.01 2.11 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.15 3.89 5.92 -2.91 -0.02 3.87 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.72 325.44 4.15 -63.58 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.12 Total: 8.60 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 4.40 Total: 18.22 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.04 Total: -109.35 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -67.72 4.15 -63.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032763583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.014 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds