Wall clock time and date at job start Tue Mar 31 2020 14:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00111 * 2 1 4 4 H 1.48502 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47417 * 299.99926 * 3 2 1 6 6 H 1.48506 * 109.47217 * 60.00451 * 3 2 1 7 7 C 1.38804 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99775 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.76195 * 99.99901 * 185.65626 * 9 7 2 11 11 C 1.39110 * 120.19106 * 6.85682 * 10 9 7 12 12 C 1.37910 * 120.04977 * 180.02562 * 11 10 9 13 13 C 1.38660 * 120.43889 * 359.97438 * 12 11 10 14 14 C 1.37809 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.39678 * 119.93418 * 0.02562 * 14 13 12 16 16 C 1.47433 * 120.21285 * 180.02562 * 15 14 13 17 17 O 1.21606 * 120.00088 * 179.97438 * 16 15 14 18 18 N 1.34783 * 119.99777 * 359.97438 * 16 15 14 19 19 C 1.46498 * 119.99450 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46662 * 180.02562 * 19 18 16 21 21 O 1.42895 * 109.47368 * 64.99885 * 20 19 18 22 22 C 1.42897 * 114.00049 * 179.97438 * 21 20 19 23 23 C 1.50702 * 109.47172 * 180.02562 * 22 21 20 24 24 N 1.34769 * 120.00018 * 180.02562 * 23 22 21 25 25 O 1.21284 * 119.99887 * 0.02562 * 23 22 21 26 26 H 0.96997 * 119.99773 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.97733 * 359.97438 * 11 10 9 28 28 H 1.08007 * 119.78572 * 179.97438 * 12 11 10 29 29 H 1.08006 * 119.80903 * 180.02562 * 13 12 11 30 30 H 1.07994 * 120.02855 * 179.72374 * 14 13 12 31 31 H 0.97003 * 119.99723 * 0.02562 * 18 16 15 32 32 H 1.09000 * 109.47061 * 299.99762 * 19 18 16 33 33 H 1.09003 * 109.47311 * 60.00209 * 19 18 16 34 34 H 1.08998 * 109.47106 * 185.00446 * 20 19 18 35 35 H 1.09001 * 109.46528 * 304.99995 * 20 19 18 36 36 H 1.08997 * 109.47015 * 299.99739 * 22 21 20 37 37 H 1.09000 * 109.47005 * 60.00377 * 22 21 20 38 38 H 0.96998 * 120.00450 * 359.97438 * 24 23 22 39 39 H 0.97004 * 120.00330 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0095 -1.2021 -0.0005 8 1 3.0896 -1.2022 -0.0001 9 16 1.1285 -2.7281 -0.0005 10 6 2.4709 -3.8565 0.1697 11 6 3.7583 -3.3824 0.4005 12 6 4.8070 -4.2682 0.5328 13 6 4.5889 -5.6343 0.4379 14 6 3.3210 -6.1235 0.2096 15 6 2.2475 -5.2405 0.0721 16 6 0.8884 -5.7572 -0.1717 17 8 -0.0435 -4.9850 -0.2904 18 7 0.6787 -7.0855 -0.2631 19 6 -0.6719 -7.5989 -0.5048 20 6 -0.6334 -9.1274 -0.5638 21 8 -0.2555 -9.6440 0.7137 22 6 -0.1897 -11.0705 0.7674 23 6 0.2150 -11.5029 2.1532 24 7 0.3427 -12.8135 2.4398 25 8 0.4257 -10.6713 3.0106 26 1 -0.4850 0.8400 0.0004 27 1 3.9367 -2.3199 0.4753 28 1 5.8048 -3.8955 0.7115 29 1 5.4176 -6.3189 0.5435 30 1 3.1584 -7.1883 0.1322 31 1 1.4221 -7.7015 -0.1681 32 1 -1.3307 -7.2834 0.3042 33 1 -1.0454 -7.2077 -1.4512 34 1 -1.6200 -9.5056 -0.8314 35 1 0.0924 -9.4438 -1.3129 36 1 -1.1673 -11.4886 0.5278 37 1 0.5452 -11.4277 0.0459 38 1 0.1738 -13.4786 1.7543 39 1 0.6035 -13.0919 3.3317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116361523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:18 Heat of formation + Delta-G solvation = -88.432221 kcal Electronic energy + Delta-G solvation = -23910.756263 eV Core-core repulsion = 20137.895075 eV Total energy + Delta-G solvation = -3772.861188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92165 -39.39771 -37.96678 -37.25014 -34.39390 -34.06542 -32.69669 -31.08663 -30.19601 -29.45859 -27.59660 -25.76747 -23.69538 -22.27667 -21.70050 -21.23886 -20.07110 -18.23448 -18.03925 -17.46804 -17.03623 -16.75691 -16.33272 -15.76173 -15.57676 -15.10943 -14.77955 -14.58400 -14.39894 -14.16632 -13.80673 -13.61826 -13.08291 -12.95680 -12.83729 -12.54013 -12.32811 -11.81549 -11.53239 -11.48735 -11.17418 -11.12886 -10.85612 -10.26842 -10.23771 -10.14255 -10.07833 -9.73606 -9.57581 -9.43908 -8.70287 -8.65235 -8.24798 -7.98848 -6.46342 -6.40645 -4.10530 1.61791 2.09865 2.25850 2.62902 3.14609 3.16222 3.24183 3.48074 3.56643 3.63296 3.74252 4.11701 4.42821 4.57534 4.63381 4.71118 4.83407 4.93710 5.00263 5.07587 5.20191 5.41271 5.48490 5.64844 5.67303 5.89126 6.06470 6.19660 6.32562 6.46542 6.62812 6.67295 6.83176 6.92789 6.94422 7.10435 7.20553 7.50924 7.66386 7.88811 8.00051 8.22272 8.88269 9.05640 10.62717 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.002721 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.234373 B =10286.444009 C =11100.322610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.082 3.918 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.594 4.594 8 H 0.091 0.909 9 S 0.182 5.818 10 C -0.056 4.056 11 C -0.154 4.154 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.059 4.059 15 C -0.176 4.176 16 C 0.553 3.447 17 O -0.511 6.511 18 N -0.733 5.733 19 C 0.126 3.874 20 C 0.049 3.951 21 O -0.358 6.358 22 C 0.042 3.958 23 C 0.514 3.486 24 N -0.857 5.857 25 O -0.513 6.513 26 H 0.274 0.726 27 H 0.139 0.861 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.401 0.599 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -25.647 -1.876 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.741 4.741 8 H 0.109 0.891 9 S 0.446 5.554 10 C -0.176 4.176 11 C -0.179 4.179 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.079 4.079 15 C -0.191 4.191 16 C 0.342 3.658 17 O -0.388 6.388 18 N -0.389 5.389 19 C 0.002 3.998 20 C -0.027 4.027 21 O -0.276 6.276 22 C -0.038 4.038 23 C 0.297 3.703 24 N -0.423 5.423 25 O -0.387 6.387 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.232 0.768 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.567 -23.981 -1.514 24.036 hybrid contribution 2.310 0.053 -0.003 2.311 sum 1.743 -23.928 -1.518 24.040 Atomic orbital electron populations 1.69992 1.06220 1.28223 1.44696 1.25101 0.94967 0.99607 0.93159 0.86101 0.79964 0.81349 0.78117 1.19174 1.20277 1.20267 1.24101 0.97025 0.94107 1.58847 0.89125 1.84769 1.02304 0.92832 1.75482 1.23080 1.00704 0.97000 0.96767 1.21427 0.91736 1.00831 1.03919 1.21078 0.98101 0.93375 0.97366 1.20630 0.96341 0.95248 1.08944 1.20902 0.92577 0.97484 0.96978 1.19118 0.92640 0.92623 1.14695 1.18297 0.88977 0.81570 0.76954 1.90778 1.43607 1.55405 1.49059 1.45727 1.09618 1.07238 1.76272 1.21251 0.85830 0.89901 1.02783 1.22921 1.00044 0.94687 0.85091 1.88118 1.90152 1.17345 1.32008 1.22172 1.02001 0.84656 0.94983 1.20328 0.77173 0.82714 0.90077 1.43736 1.74152 1.07164 1.17278 1.90844 1.47599 1.51464 1.48751 0.91643 0.84387 0.87059 0.87129 0.87185 0.76771 0.90554 0.89768 0.91409 0.92277 0.90161 0.90129 0.77133 0.76296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.22 55.49 0.73 -24.51 16 2 C 0.08 2.31 5.49 -17.46 -0.10 2.21 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.59 -16.77 9.00 30.94 0.28 -16.50 16 8 H 0.09 2.43 4.98 -52.48 -0.26 2.17 16 9 S 0.18 5.03 18.56 -107.50 -2.00 3.04 16 10 C -0.06 -1.33 6.14 -38.39 -0.24 -1.56 16 11 C -0.15 -3.35 9.22 -39.38 -0.36 -3.71 16 12 C -0.08 -1.38 10.03 -39.55 -0.40 -1.78 16 13 C -0.19 -3.07 10.02 -39.58 -0.40 -3.46 16 14 C -0.06 -1.01 9.53 -39.20 -0.37 -1.38 16 15 C -0.18 -3.67 5.89 -104.75 -0.62 -4.29 16 16 C 0.55 11.31 7.75 -12.51 -0.10 11.22 16 17 O -0.51 -12.39 13.77 5.27 0.07 -12.32 16 18 N -0.73 -11.24 5.45 -61.38 -0.33 -11.58 16 19 C 0.13 1.60 6.06 -4.04 -0.02 1.58 16 20 C 0.05 0.42 6.07 37.16 0.23 0.65 16 21 O -0.36 -3.93 9.82 -55.14 -0.54 -4.47 16 22 C 0.04 0.28 6.42 36.01 0.23 0.51 16 23 C 0.51 4.66 8.18 -10.99 -0.09 4.57 16 24 N -0.86 -3.58 8.87 31.22 0.28 -3.31 16 25 O -0.51 -7.84 17.34 -14.36 -0.25 -8.09 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.14 3.11 5.03 -52.49 -0.26 2.85 16 28 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 31 H 0.40 5.19 6.50 -40.82 -0.27 4.92 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.40 0.19 8.83 -40.82 -0.36 -0.17 16 39 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -38.55 351.67 -8.09 -46.63 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.37 Total: 5.18 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.96 Total: -11.96 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.68 Total: -39.40 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.72 Total: -24.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -2.00 Total: 3.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.55 -8.09 -46.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116361523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.802 kcal (2) G-P(sol) polarization free energy of solvation -38.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds