Wall clock time and date at job start Tue Mar 31 2020 14:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47226 * 264.85370 * 3 2 1 5 5 H 1.48503 * 109.47170 * 24.85392 * 3 2 1 6 6 H 1.48501 * 109.47373 * 144.85186 * 3 2 1 7 7 C 1.37878 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 350.62005 * 7 2 1 9 9 C 1.50697 * 119.99933 * 170.61787 * 7 2 1 10 10 O 1.42905 * 110.91955 * 331.93179 * 9 7 2 11 11 C 1.55163 * 111.00340 * 95.82961 * 9 7 2 12 12 C 1.54332 * 103.01913 * 153.38168 * 11 9 7 13 13 N 1.47025 * 107.27017 * 338.14440 * 12 11 9 14 14 C 1.34771 * 125.64905 * 178.85173 * 13 12 11 15 15 O 1.21576 * 119.99638 * 184.72585 * 14 13 12 16 16 C 1.47685 * 120.00348 * 4.72607 * 14 13 12 17 17 C 1.39668 * 120.16638 * 47.68298 * 16 14 13 18 18 C 1.37848 * 119.87898 * 179.75163 * 17 16 14 19 19 N 1.48024 * 119.88983 * 180.27287 * 18 17 16 20 20 O 1.21795 * 120.00046 * 0.02562 * 19 18 17 21 21 O 1.21796 * 119.99756 * 179.97438 * 19 18 17 22 22 C 1.38465 * 120.21945 * 0.24256 * 18 17 16 23 23 C 1.38203 * 120.33613 * 0.02562 * 22 18 17 24 24 C 1.38314 * 120.12019 * 359.97075 * 23 22 18 25 25 F 1.35098 * 120.10998 * 180.02562 * 24 23 22 26 26 C 1.47428 * 108.69736 * 358.58185 * 13 12 11 27 27 H 0.97000 * 120.00291 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99292 * 301.41740 * 10 9 7 29 29 H 1.08995 * 110.71847 * 271.94076 * 11 9 7 30 30 H 1.08994 * 110.71996 * 35.03967 * 11 9 7 31 31 H 1.09002 * 109.99573 * 218.66279 * 12 11 9 32 32 H 1.08998 * 109.78078 * 97.49788 * 12 11 9 33 33 H 1.08000 * 120.05597 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.82737 * 180.02562 * 22 18 17 35 35 H 1.08006 * 119.93313 * 179.97438 * 23 22 18 36 36 H 1.09004 * 110.36526 * 143.19938 * 26 13 12 37 37 H 1.08994 * 110.37072 * 265.40699 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6054 1.9835 -1.3944 5 1 1.3965 2.6816 0.5885 6 1 3.4881 1.4739 0.8060 7 6 2.0045 -1.1941 -0.0005 8 1 1.4753 -2.1232 0.1515 9 6 3.4963 -1.2028 -0.2133 10 8 3.9060 -0.0827 -1.0005 11 6 4.2512 -1.2358 1.1419 12 6 5.5889 -1.9141 0.7783 13 7 5.3692 -2.6775 -0.4588 14 6 6.3022 -3.3949 -1.1153 15 8 6.0298 -3.9184 -2.1783 16 6 7.6556 -3.5453 -0.5436 17 6 7.8154 -3.9014 0.7975 18 6 9.0813 -4.0451 1.3237 19 7 9.2509 -4.4285 2.7433 20 8 8.2729 -4.6168 3.4443 21 8 10.3686 -4.5564 3.2102 22 6 10.1948 -3.8327 0.5285 23 6 10.0471 -3.4746 -0.7981 24 6 8.7834 -3.3266 -1.3406 25 9 8.6393 -2.9771 -2.6376 26 6 3.9575 -2.5334 -0.8586 27 1 -0.4850 0.8400 0.0004 28 1 3.4892 -0.0412 -1.8721 29 1 4.4174 -0.2255 1.5155 30 1 3.7045 -1.8309 1.8734 31 1 5.8957 -2.5867 1.5794 32 1 6.3545 -1.1557 0.6148 33 1 6.9486 -4.0682 1.4198 34 1 11.1837 -3.9475 0.9472 35 1 10.9202 -3.3102 -1.4124 36 1 3.8744 -2.4774 -1.9441 37 1 3.3679 -3.3667 -0.4764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118773950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:18 Heat of formation + Delta-G solvation = -88.060169 kcal Electronic energy + Delta-G solvation = -27638.336926 eV Core-core repulsion = 23299.278695 eV Total energy + Delta-G solvation = -4339.058231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.63126 -42.51258 -40.51764 -39.09092 -37.72207 -36.87340 -35.06699 -32.54611 -32.41828 -32.16272 -30.44027 -28.56919 -26.75761 -25.95961 -24.51157 -23.06222 -22.55801 -20.67721 -20.00865 -19.07312 -18.85893 -18.27483 -17.85649 -17.69351 -17.17028 -17.09061 -16.32511 -15.70341 -15.46833 -15.27776 -14.90305 -14.61219 -14.30249 -14.04248 -13.83195 -13.62260 -13.16964 -12.86359 -12.69440 -12.32838 -12.10969 -11.86918 -11.79893 -11.72282 -11.55291 -11.42039 -11.13098 -10.63528 -10.52786 -10.37754 -10.18656 -10.02799 -9.82957 -9.43330 -8.85057 -8.64369 -8.37275 -6.31735 -4.43444 -0.67309 0.02456 0.80510 0.96637 2.24265 2.67080 2.94347 3.28751 3.34460 3.43981 3.58548 3.68951 3.84365 4.06501 4.19432 4.36439 4.52855 4.77703 4.92087 4.95418 4.97767 5.03315 5.08403 5.17693 5.36567 5.58441 5.63215 5.71300 5.89775 6.01321 6.23317 6.34384 6.48495 6.57040 6.89067 7.28458 7.30580 7.53243 7.97136 8.00196 8.49335 8.68958 9.28505 10.77132 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003825 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.507232 B = 7317.934514 C = 8166.314418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.951 3.049 4 H -0.293 1.293 5 H -0.325 1.325 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.221 3.779 10 O -0.559 6.559 11 C -0.121 4.121 12 C 0.092 3.908 13 N -0.596 5.596 14 C 0.568 3.432 15 O -0.525 6.525 16 C -0.151 4.151 17 C 0.004 3.996 18 C -0.063 4.063 19 N 0.031 4.969 20 O -0.150 6.150 21 O -0.156 6.156 22 C -0.011 4.011 23 C -0.157 4.157 24 C 0.201 3.799 25 F -0.102 7.102 26 C 0.089 3.911 27 H 0.269 0.731 28 H 0.376 0.624 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.198 -5.678 0.815 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.787 3.213 4 H -0.220 1.220 5 H -0.256 1.256 6 H -0.200 1.200 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.180 3.820 10 O -0.368 6.368 11 C -0.159 4.159 12 C -0.031 4.031 13 N -0.328 5.328 14 C 0.354 3.646 15 O -0.402 6.402 16 C -0.156 4.156 17 C -0.016 4.016 18 C -0.146 4.146 19 N 0.552 4.448 20 O -0.367 6.367 21 O -0.372 6.372 22 C -0.030 4.030 23 C -0.176 4.176 24 C 0.180 3.820 25 F -0.080 7.080 26 C -0.033 4.033 27 H 0.078 0.922 28 H 0.224 0.776 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.094 0.906 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.170 -5.597 -0.006 20.932 hybrid contribution 0.084 0.672 -0.296 0.739 sum 20.254 -4.925 -0.302 20.846 Atomic orbital electron populations 1.69960 1.06842 1.28043 1.46707 1.25129 0.94917 1.00453 0.92639 0.85665 0.77544 0.80063 0.78031 1.22047 1.25598 1.20005 1.21080 0.88792 0.95851 1.53735 0.89819 1.20225 0.94127 0.80697 0.86906 1.86111 1.71315 1.48004 1.31346 1.22981 0.92512 1.01153 0.99241 1.22358 1.00698 0.94573 0.85428 1.48513 1.11205 1.46888 1.26183 1.17252 0.82844 0.80061 0.84412 1.90850 1.79998 1.48473 1.20899 1.20103 0.94934 1.07082 0.93478 1.21121 0.96934 0.90144 0.93360 1.20961 0.96157 1.14452 0.83056 1.43429 1.00693 0.98060 1.02650 1.94600 1.30961 1.53402 1.57765 1.94543 1.11428 1.54985 1.76238 1.21006 0.99140 0.90926 0.91967 1.21143 0.96709 1.04284 0.95450 1.17964 0.92957 0.92092 0.78943 1.91659 1.96474 1.87512 1.32314 1.23286 0.77863 1.01092 1.01027 0.92183 0.77563 0.89877 0.89126 0.91957 0.91802 0.81197 0.81450 0.81489 0.90588 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.96 55.43 0.77 -24.27 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 3 Si 0.95 22.24 24.63 -169.99 -4.19 18.05 16 4 H -0.29 -6.69 6.98 56.52 0.39 -6.29 16 5 H -0.32 -7.87 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.28 5.78 56.52 0.33 -5.95 16 7 C -0.56 -13.89 8.85 -34.44 -0.30 -14.19 16 8 H 0.08 2.27 8.01 -52.49 -0.42 1.85 16 9 C 0.22 4.55 0.71 -89.62 -0.06 4.48 16 10 O -0.56 -11.56 8.84 -35.23 -0.31 -11.87 16 11 C -0.12 -2.16 5.97 -24.89 -0.15 -2.31 16 12 C 0.09 1.36 5.97 -3.06 -0.02 1.34 16 13 N -0.60 -9.88 3.33 -171.68 -0.57 -10.45 16 14 C 0.57 9.27 7.15 -12.40 -0.09 9.19 16 15 O -0.52 -10.27 16.84 5.30 0.09 -10.18 16 16 C -0.15 -1.87 5.33 -104.91 -0.56 -2.43 16 17 C 0.00 0.04 7.93 -39.19 -0.31 -0.27 16 18 C -0.06 -0.61 6.84 -80.00 -0.55 -1.16 16 19 N 0.03 0.36 4.45 33.94 0.15 0.51 16 20 O -0.15 -1.93 18.43 -29.46 -0.54 -2.47 16 21 O -0.16 -1.81 18.44 -29.46 -0.54 -2.36 16 22 C -0.01 -0.08 9.55 -39.51 -0.38 -0.46 16 23 C -0.16 -1.07 10.01 -39.57 -0.40 -1.47 16 24 C 0.20 2.15 7.26 -38.96 -0.28 1.86 16 25 F -0.10 -1.28 16.48 2.25 0.04 -1.24 16 26 C 0.09 1.66 6.12 -2.53 -0.02 1.65 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.38 7.14 8.45 45.56 0.38 7.52 16 29 H 0.08 1.54 6.86 -51.93 -0.36 1.18 16 30 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 31 H 0.06 0.76 5.92 -51.93 -0.31 0.45 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.17 1.77 5.98 -52.49 -0.31 1.46 16 34 H 0.17 0.75 7.60 -52.49 -0.40 0.35 16 35 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 37 H 0.08 1.49 8.00 -51.93 -0.42 1.08 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -31.21 323.77 -6.16 -37.36 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.72 Total: 3.93 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -3.21 Total: -1.89 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.35 Total: -34.21 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.31 Total: -26.88 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.19 Total: 18.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.21 -6.16 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118773950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.697 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds