Wall clock time and date at job start Tue Mar 31 2020 14:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47226 * 264.85370 * 3 2 1 5 5 H 1.48503 * 109.47170 * 24.85392 * 3 2 1 6 6 H 1.48501 * 109.47373 * 144.85186 * 3 2 1 7 7 C 1.37878 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 350.62005 * 7 2 1 9 9 C 1.50697 * 119.99933 * 170.61787 * 7 2 1 10 10 O 1.42905 * 110.91955 * 331.93179 * 9 7 2 11 11 C 1.55163 * 111.00340 * 95.82961 * 9 7 2 12 12 C 1.54332 * 103.01913 * 153.38168 * 11 9 7 13 13 N 1.47025 * 107.27017 * 338.14440 * 12 11 9 14 14 C 1.34771 * 125.64905 * 178.85173 * 13 12 11 15 15 O 1.21576 * 119.99638 * 184.72585 * 14 13 12 16 16 C 1.47685 * 120.00348 * 4.72607 * 14 13 12 17 17 C 1.39668 * 120.16638 * 47.68298 * 16 14 13 18 18 C 1.37848 * 119.87898 * 179.75163 * 17 16 14 19 19 N 1.48024 * 119.88983 * 180.27287 * 18 17 16 20 20 O 1.21795 * 120.00046 * 0.02562 * 19 18 17 21 21 O 1.21796 * 119.99756 * 179.97438 * 19 18 17 22 22 C 1.38465 * 120.21945 * 0.24256 * 18 17 16 23 23 C 1.38203 * 120.33613 * 0.02562 * 22 18 17 24 24 C 1.38314 * 120.12019 * 359.97075 * 23 22 18 25 25 F 1.35098 * 120.10998 * 180.02562 * 24 23 22 26 26 C 1.47428 * 108.69736 * 358.58185 * 13 12 11 27 27 H 0.97000 * 120.00291 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99292 * 301.41740 * 10 9 7 29 29 H 1.08995 * 110.71847 * 271.94076 * 11 9 7 30 30 H 1.08994 * 110.71996 * 35.03967 * 11 9 7 31 31 H 1.09002 * 109.99573 * 218.66279 * 12 11 9 32 32 H 1.08998 * 109.78078 * 97.49788 * 12 11 9 33 33 H 1.08000 * 120.05597 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.82737 * 180.02562 * 22 18 17 35 35 H 1.08006 * 119.93313 * 179.97438 * 23 22 18 36 36 H 1.09004 * 110.36526 * 143.19938 * 26 13 12 37 37 H 1.08994 * 110.37072 * 265.40699 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6054 1.9835 -1.3944 5 1 1.3965 2.6816 0.5885 6 1 3.4881 1.4739 0.8060 7 6 2.0045 -1.1941 -0.0005 8 1 1.4753 -2.1232 0.1515 9 6 3.4963 -1.2028 -0.2133 10 8 3.9060 -0.0827 -1.0005 11 6 4.2512 -1.2358 1.1419 12 6 5.5889 -1.9141 0.7783 13 7 5.3692 -2.6775 -0.4588 14 6 6.3022 -3.3949 -1.1153 15 8 6.0298 -3.9184 -2.1783 16 6 7.6556 -3.5453 -0.5436 17 6 7.8154 -3.9014 0.7975 18 6 9.0813 -4.0451 1.3237 19 7 9.2509 -4.4285 2.7433 20 8 8.2729 -4.6168 3.4443 21 8 10.3686 -4.5564 3.2102 22 6 10.1948 -3.8327 0.5285 23 6 10.0471 -3.4746 -0.7981 24 6 8.7834 -3.3266 -1.3406 25 9 8.6393 -2.9771 -2.6376 26 6 3.9575 -2.5334 -0.8586 27 1 -0.4850 0.8400 0.0004 28 1 3.4892 -0.0412 -1.8721 29 1 4.4174 -0.2255 1.5155 30 1 3.7045 -1.8309 1.8734 31 1 5.8957 -2.5867 1.5794 32 1 6.3545 -1.1557 0.6148 33 1 6.9486 -4.0682 1.4198 34 1 11.1837 -3.9475 0.9472 35 1 10.9202 -3.3102 -1.4124 36 1 3.8744 -2.4774 -1.9441 37 1 3.3679 -3.3667 -0.4764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118773950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:18 Heat of formation + Delta-G solvation = -109.891851 kcal Electronic energy + Delta-G solvation = -27639.283619 eV Core-core repulsion = 23299.278695 eV Total energy + Delta-G solvation = -4340.004924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.48625 -43.34834 -41.68291 -40.14616 -39.14020 -37.74045 -36.59453 -34.48328 -33.42455 -32.91918 -31.85096 -30.07649 -27.59326 -27.54226 -25.65908 -24.07065 -23.65734 -21.82097 -21.53294 -19.98615 -19.89843 -19.44649 -19.08425 -18.68780 -18.34828 -17.97468 -17.38561 -17.18705 -16.85617 -16.62058 -16.38701 -15.67697 -15.44100 -15.05486 -14.83519 -14.71121 -14.61672 -14.15738 -14.05100 -13.90312 -13.39588 -13.33644 -13.07857 -12.78488 -12.69433 -12.42657 -12.35323 -12.31996 -12.26215 -12.04658 -11.47963 -11.33237 -10.80849 -10.67448 -10.65143 -10.47512 -9.79724 -8.38150 -6.50937 -1.47666 -0.73353 -0.00819 0.16604 1.21154 1.46834 1.51759 1.59884 1.71761 1.91544 2.40297 2.51548 2.82496 2.93468 3.08677 3.34141 3.35275 3.40605 3.70759 3.78035 3.96940 4.10049 4.21001 4.28038 4.32222 4.39478 4.45353 4.53085 4.71891 4.85820 4.92693 5.01811 5.11157 5.20145 5.29089 5.45427 5.98946 6.23489 6.39911 6.54884 6.70910 6.82694 7.24937 8.74901 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003825 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.507232 B = 7317.934514 C = 8166.314418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 1.008 2.992 4 H -0.282 1.282 5 H -0.337 1.337 6 H -0.262 1.262 7 C -0.552 4.552 8 H 0.049 0.951 9 C 0.217 3.783 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.100 3.900 13 N -0.599 5.599 14 C 0.568 3.432 15 O -0.566 6.566 16 C -0.170 4.170 17 C 0.006 3.994 18 C -0.066 4.066 19 N 0.032 4.968 20 O -0.195 6.195 21 O -0.137 6.137 22 C 0.013 3.987 23 C -0.128 4.128 24 C 0.191 3.809 25 F -0.117 7.117 26 C 0.096 3.904 27 H 0.269 0.731 28 H 0.381 0.619 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.204 0.796 35 H 0.211 0.789 36 H 0.065 0.935 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.739 -5.377 1.195 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.842 3.158 4 H -0.209 1.209 5 H -0.270 1.270 6 H -0.187 1.187 7 C -0.590 4.590 8 H 0.067 0.933 9 C 0.177 3.823 10 O -0.368 6.368 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.330 5.330 14 C 0.357 3.643 15 O -0.446 6.446 16 C -0.175 4.175 17 C -0.014 4.014 18 C -0.150 4.150 19 N 0.550 4.450 20 O -0.402 6.402 21 O -0.361 6.361 22 C -0.006 4.006 23 C -0.147 4.147 24 C 0.170 3.830 25 F -0.095 7.095 26 C -0.026 4.026 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.184 0.816 34 H 0.221 0.779 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.659 -5.312 0.409 25.227 hybrid contribution -1.218 0.472 -0.446 1.380 sum 23.441 -4.839 -0.037 23.935 Atomic orbital electron populations 1.70079 1.08548 1.28697 1.49548 1.25847 0.95303 1.03556 0.92629 0.84722 0.76380 0.76157 0.78529 1.20947 1.26967 1.18744 1.21308 0.91311 0.94264 1.52101 0.93289 1.20133 0.91912 0.81625 0.88668 1.86079 1.71086 1.47871 1.31783 1.22895 0.93867 1.01691 0.97323 1.22391 0.99097 0.95234 0.85457 1.48498 1.10264 1.47409 1.26803 1.17802 0.84047 0.78760 0.83729 1.90819 1.81038 1.49939 1.22847 1.19693 0.93073 1.10256 0.94435 1.20952 0.97640 0.90207 0.92563 1.21029 0.96675 1.15092 0.82186 1.43634 1.00423 0.97672 1.03232 1.94622 1.31195 1.55690 1.58690 1.94517 1.11304 1.53640 1.76594 1.21482 0.99690 0.88042 0.91375 1.21541 0.96162 1.01560 0.95391 1.18307 0.93902 0.92541 0.78256 1.91627 1.96644 1.87821 1.33428 1.22923 0.79714 0.99862 1.00137 0.92257 0.76899 0.89910 0.88978 0.88905 0.90282 0.81572 0.77870 0.77242 0.91692 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.96 21.45 0.30 -54.51 16 2 C 0.03 1.47 5.46 84.66 0.46 1.93 16 3 Si 1.01 45.86 24.63 68.60 1.69 47.55 16 4 H -0.28 -12.25 6.98 99.48 0.69 -11.56 16 5 H -0.34 -15.98 7.11 99.48 0.71 -15.27 16 6 H -0.26 -11.30 5.78 99.48 0.58 -10.72 16 7 C -0.55 -28.32 8.85 25.60 0.23 -28.09 16 8 H 0.05 2.80 8.01 -2.91 -0.02 2.78 16 9 C 0.22 8.93 0.71 -10.15 -0.01 8.92 16 10 O -0.56 -22.48 8.84 -148.98 -1.32 -23.80 16 11 C -0.12 -4.14 5.97 31.79 0.19 -3.95 16 12 C 0.10 2.76 5.97 86.73 0.52 3.28 16 13 N -0.60 -19.46 3.33 -815.35 -2.71 -22.17 16 14 C 0.57 18.26 7.15 86.74 0.62 18.88 16 15 O -0.57 -22.45 16.84 -3.96 -0.07 -22.52 16 16 C -0.17 -3.88 5.33 -20.05 -0.11 -3.99 16 17 C 0.01 0.11 7.93 22.52 0.18 0.29 16 18 C -0.07 -1.05 6.84 36.34 0.25 -0.80 16 19 N 0.03 0.65 4.45 -46.55 -0.21 0.45 16 20 O -0.19 -4.77 18.43 18.89 0.35 -4.42 16 21 O -0.14 -2.69 18.44 18.89 0.35 -2.34 16 22 C 0.01 0.11 9.55 22.32 0.21 0.32 16 23 C -0.13 -1.07 10.01 22.28 0.22 -0.84 16 24 C 0.19 3.49 7.26 22.67 0.16 3.66 16 25 F -0.12 -2.73 16.48 44.97 0.74 -1.98 16 26 C 0.10 3.67 6.12 86.85 0.53 4.20 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.38 14.24 8.45 -74.05 -0.63 13.62 16 29 H 0.08 2.89 6.86 -2.39 -0.02 2.87 16 30 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 31 H 0.09 2.04 5.92 -2.39 -0.01 2.02 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.17 3.22 5.98 -2.91 -0.02 3.20 16 34 H 0.20 0.39 7.60 -2.91 -0.02 0.37 16 35 H 0.21 0.05 8.06 -2.91 -0.02 0.02 16 36 H 0.06 2.60 7.99 -2.39 -0.02 2.58 16 37 H 0.07 2.82 8.00 -2.39 -0.02 2.80 16 Total: -1.00 -70.93 323.77 2.97 -67.96 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.39 Total: 11.99 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 3.46 Total: 3.81 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -2.62 Total: -76.24 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.69 Total: -53.08 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.74 Total: -1.98 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.69 Total: 47.55 kcal Total: -70.93 2.97 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118773950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.934 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds