Wall clock time and date at job start Tue Mar 31 2020 14:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47345 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47177 * 120.00158 * 3 2 1 7 7 C 1.37881 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00323 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88305 * 300.69986 * 9 7 2 11 11 C 1.55154 * 111.00371 * 176.82443 * 9 7 2 12 12 C 1.54429 * 102.89308 * 206.40479 * 11 9 7 13 13 N 1.47026 * 107.27926 * 22.18620 * 12 11 9 14 14 C 1.34779 * 125.64552 * 181.02592 * 13 12 11 15 15 O 1.21569 * 119.99836 * 174.72703 * 14 13 12 16 16 C 1.47693 * 120.00123 * 354.73146 * 14 13 12 17 17 C 1.39651 * 120.16750 * 315.77739 * 16 14 13 18 18 C 1.37855 * 119.88198 * 180.02562 * 17 16 14 19 19 N 1.48018 * 119.89539 * 179.97438 * 18 17 16 20 20 O 1.21802 * 119.99800 * 0.02562 * 19 18 17 21 21 O 1.21796 * 120.00110 * 179.97438 * 19 18 17 22 22 C 1.38461 * 120.21460 * 359.97438 * 18 17 16 23 23 C 1.38208 * 120.33996 * 359.97438 * 22 18 17 24 24 C 1.38321 * 120.11528 * 359.77145 * 23 22 18 25 25 F 1.35103 * 120.10786 * 180.27793 * 24 23 22 26 26 C 1.47422 * 108.70259 * 1.05686 * 13 12 11 27 27 H 0.97002 * 119.99827 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00341 * 59.30338 * 10 9 7 29 29 H 1.09001 * 110.71920 * 324.74258 * 11 9 7 30 30 H 1.08999 * 110.72525 * 88.02151 * 11 9 7 31 31 H 1.08996 * 109.87861 * 262.76184 * 12 11 9 32 32 H 1.08999 * 110.00896 * 141.67305 * 12 11 9 33 33 H 1.08008 * 120.06398 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.82851 * 180.02562 * 22 18 17 35 35 H 1.08003 * 119.94053 * 180.02562 * 23 22 18 36 36 H 1.09005 * 110.36810 * 217.03352 * 26 13 12 37 37 H 1.09003 * 110.36675 * 94.71712 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4064 -2.5998 1.1478 11 6 2.2253 -3.7039 -0.0814 12 6 1.3620 -4.8016 -0.7408 13 7 0.2743 -4.1264 -1.4636 14 6 -0.7071 -4.7381 -2.1559 15 8 -1.6114 -4.0828 -2.6364 16 6 -0.6840 -6.2045 -2.3307 17 6 0.5060 -6.8521 -2.6696 18 6 0.5207 -8.2210 -2.8318 19 7 1.7817 -8.9077 -3.1915 20 8 2.8041 -8.2634 -3.3433 21 8 1.7970 -10.1171 -3.3349 22 6 -0.6401 -8.9557 -2.6593 23 6 -1.8225 -8.3241 -2.3229 24 6 -1.8520 -6.9519 -2.1515 25 9 -3.0067 -6.3353 -1.8172 26 6 0.4352 -2.6694 -1.3063 27 1 -0.4850 0.8401 0.0004 28 1 -0.2522 -1.8949 1.2146 29 1 3.0856 -3.4629 -0.7058 30 1 2.5441 -4.0097 0.9150 31 1 0.9474 -5.4570 0.0251 32 1 1.9659 -5.3823 -1.4381 33 1 1.4130 -6.2815 -2.8051 34 1 -0.6214 -10.0279 -2.7876 35 1 -2.7242 -8.9035 -2.1896 36 1 -0.5382 -2.1883 -1.2110 37 1 0.9830 -2.2547 -2.1526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118773951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:21 Heat of formation + Delta-G solvation = -93.274562 kcal Electronic energy + Delta-G solvation = -27643.316952 eV Core-core repulsion = 23304.032608 eV Total energy + Delta-G solvation = -4339.284344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.48334 -42.43681 -40.31638 -38.84363 -37.32597 -36.80244 -34.51863 -32.30196 -32.27622 -32.05036 -30.22502 -28.02210 -26.65863 -25.76593 -24.46713 -22.99936 -22.46411 -20.48159 -19.79649 -18.99754 -18.63873 -18.10691 -17.78450 -17.37025 -16.95773 -16.88275 -16.17784 -15.50301 -15.27931 -14.96412 -14.71573 -14.37062 -14.18257 -13.89230 -13.46307 -13.23710 -13.02855 -12.93765 -12.48712 -12.03333 -11.79872 -11.70779 -11.62540 -11.48370 -11.35586 -11.10795 -10.93960 -10.74943 -10.57888 -10.31027 -10.05472 -9.86259 -9.67784 -9.51023 -8.78225 -8.53516 -8.04792 -6.37338 -4.47504 -0.57434 0.14326 0.89888 1.05261 2.39380 2.90061 3.15851 3.19483 3.23582 3.25509 3.42957 3.80568 3.97181 4.18070 4.20510 4.35818 4.65630 4.87923 4.96242 5.08464 5.13706 5.18278 5.23732 5.46945 5.63495 5.73131 5.85878 5.97999 6.09819 6.33659 6.57804 6.66788 6.70093 7.09167 7.20077 7.38256 7.64915 7.84358 7.89301 8.27705 8.56336 9.21139 9.30628 10.69956 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.003658 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.150080 B = 7651.682903 C = 8673.011604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.095 3.905 13 N -0.596 5.596 14 C 0.563 3.437 15 O -0.524 6.524 16 C -0.149 4.149 17 C 0.002 3.998 18 C -0.064 4.064 19 N 0.032 4.968 20 O -0.152 6.152 21 O -0.158 6.158 22 C -0.013 4.013 23 C -0.158 4.158 24 C 0.202 3.798 25 F -0.101 7.101 26 C 0.092 3.908 27 H 0.272 0.728 28 H 0.385 0.615 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -16.221 -3.981 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.028 4.028 13 N -0.327 5.327 14 C 0.349 3.651 15 O -0.402 6.402 16 C -0.154 4.154 17 C -0.018 4.018 18 C -0.148 4.148 19 N 0.552 4.448 20 O -0.369 6.369 21 O -0.374 6.374 22 C -0.032 4.032 23 C -0.177 4.177 24 C 0.181 3.819 25 F -0.078 7.078 26 C -0.028 4.028 27 H 0.082 0.918 28 H 0.236 0.764 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.107 0.893 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.558 -15.923 -3.971 16.609 hybrid contribution 0.175 1.280 -0.199 1.307 sum -2.383 -14.643 -4.171 15.411 Atomic orbital electron populations 1.69635 1.06052 1.28246 1.49326 1.25085 0.95048 0.99868 0.93149 0.86425 0.79518 0.81890 0.78902 1.19929 1.21049 1.19924 1.21432 0.93730 0.89910 1.52796 0.91348 1.19598 0.86106 0.91803 0.81546 1.86088 1.51515 1.55054 1.46601 1.22659 0.97695 0.94605 1.00483 1.22286 0.88810 0.96626 0.95065 1.48710 1.25304 1.10424 1.48294 1.17273 0.82511 0.85012 0.80348 1.90848 1.34397 1.65232 1.49722 1.20236 0.92342 0.96182 1.06656 1.21187 0.98913 0.91589 0.90074 1.20957 0.85810 0.93032 1.14979 1.43436 1.02337 1.01061 0.97932 1.94593 1.21783 1.66564 1.53953 1.94535 1.92181 0.96223 1.54420 1.20979 0.88882 1.02089 0.91252 1.21137 0.99901 0.92222 1.04442 1.17994 0.81458 0.90411 0.92029 1.91666 1.45414 1.82939 1.87800 1.23467 1.03185 0.75416 1.00781 0.91767 0.76428 0.89940 0.90344 0.91957 0.92286 0.81167 0.81549 0.81561 0.89256 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 10.69 55.43 0.59 -22.44 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 3 Si 0.91 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.43 8.26 -34.44 -0.28 -13.71 16 8 H 0.07 1.66 7.78 -52.48 -0.41 1.25 16 9 C 0.25 5.73 0.88 -89.63 -0.08 5.65 16 10 O -0.58 -14.29 13.17 -35.23 -0.46 -14.75 16 11 C -0.12 -2.15 6.13 -24.84 -0.15 -2.31 16 12 C 0.09 1.54 5.91 -3.01 -0.02 1.52 16 13 N -0.60 -11.40 3.33 -171.62 -0.57 -11.97 16 14 C 0.56 10.52 7.22 -12.40 -0.09 10.43 16 15 O -0.52 -11.71 16.69 5.30 0.09 -11.62 16 16 C -0.15 -2.09 5.40 -104.92 -0.57 -2.65 16 17 C 0.00 0.02 7.93 -39.19 -0.31 -0.29 16 18 C -0.06 -0.69 6.84 -80.00 -0.55 -1.23 16 19 N 0.03 0.39 4.45 33.93 0.15 0.54 16 20 O -0.15 -2.04 18.44 -29.46 -0.54 -2.58 16 21 O -0.16 -1.92 18.44 -29.46 -0.54 -2.46 16 22 C -0.01 -0.10 9.55 -39.51 -0.38 -0.48 16 23 C -0.16 -1.24 10.01 -39.56 -0.40 -1.64 16 24 C 0.20 2.44 7.25 -38.96 -0.28 2.16 16 25 F -0.10 -1.43 16.38 2.25 0.04 -1.39 16 26 C 0.09 2.08 5.53 -2.54 -0.01 2.06 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.38 9.77 7.25 45.56 0.33 10.10 16 29 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.78 5.69 -51.93 -0.30 0.49 16 33 H 0.17 1.99 5.64 -52.48 -0.30 1.69 16 34 H 0.17 0.88 7.60 -52.49 -0.40 0.48 16 35 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 36 H 0.09 2.29 7.42 -51.93 -0.39 1.90 16 37 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -29.13 328.74 -7.22 -36.35 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -2.69 Total: 9.45 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.21 Total: 1.23 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.17 Total: -33.87 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.46 Total: -31.42 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.13 -7.22 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118773951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.920 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds