Wall clock time and date at job start Tue Mar 31 2020 14:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47345 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47177 * 120.00158 * 3 2 1 7 7 C 1.37881 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00323 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88305 * 300.69986 * 9 7 2 11 11 C 1.55154 * 111.00371 * 176.82443 * 9 7 2 12 12 C 1.54429 * 102.89308 * 206.40479 * 11 9 7 13 13 N 1.47026 * 107.27926 * 22.18620 * 12 11 9 14 14 C 1.34779 * 125.64552 * 181.02592 * 13 12 11 15 15 O 1.21569 * 119.99836 * 174.72703 * 14 13 12 16 16 C 1.47693 * 120.00123 * 354.73146 * 14 13 12 17 17 C 1.39651 * 120.16750 * 315.77739 * 16 14 13 18 18 C 1.37855 * 119.88198 * 180.02562 * 17 16 14 19 19 N 1.48018 * 119.89539 * 179.97438 * 18 17 16 20 20 O 1.21802 * 119.99800 * 0.02562 * 19 18 17 21 21 O 1.21796 * 120.00110 * 179.97438 * 19 18 17 22 22 C 1.38461 * 120.21460 * 359.97438 * 18 17 16 23 23 C 1.38208 * 120.33996 * 359.97438 * 22 18 17 24 24 C 1.38321 * 120.11528 * 359.77145 * 23 22 18 25 25 F 1.35103 * 120.10786 * 180.27793 * 24 23 22 26 26 C 1.47422 * 108.70259 * 1.05686 * 13 12 11 27 27 H 0.97002 * 119.99827 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00341 * 59.30338 * 10 9 7 29 29 H 1.09001 * 110.71920 * 324.74258 * 11 9 7 30 30 H 1.08999 * 110.72525 * 88.02151 * 11 9 7 31 31 H 1.08996 * 109.87861 * 262.76184 * 12 11 9 32 32 H 1.08999 * 110.00896 * 141.67305 * 12 11 9 33 33 H 1.08008 * 120.06398 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.82851 * 180.02562 * 22 18 17 35 35 H 1.08003 * 119.94053 * 180.02562 * 23 22 18 36 36 H 1.09005 * 110.36810 * 217.03352 * 26 13 12 37 37 H 1.09003 * 110.36675 * 94.71712 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4064 -2.5998 1.1478 11 6 2.2253 -3.7039 -0.0814 12 6 1.3620 -4.8016 -0.7408 13 7 0.2743 -4.1264 -1.4636 14 6 -0.7071 -4.7381 -2.1559 15 8 -1.6114 -4.0828 -2.6364 16 6 -0.6840 -6.2045 -2.3307 17 6 0.5060 -6.8521 -2.6696 18 6 0.5207 -8.2210 -2.8318 19 7 1.7817 -8.9077 -3.1915 20 8 2.8041 -8.2634 -3.3433 21 8 1.7970 -10.1171 -3.3349 22 6 -0.6401 -8.9557 -2.6593 23 6 -1.8225 -8.3241 -2.3229 24 6 -1.8520 -6.9519 -2.1515 25 9 -3.0067 -6.3353 -1.8172 26 6 0.4352 -2.6694 -1.3063 27 1 -0.4850 0.8401 0.0004 28 1 -0.2522 -1.8949 1.2146 29 1 3.0856 -3.4629 -0.7058 30 1 2.5441 -4.0097 0.9150 31 1 0.9474 -5.4570 0.0251 32 1 1.9659 -5.3823 -1.4381 33 1 1.4130 -6.2815 -2.8051 34 1 -0.6214 -10.0279 -2.7876 35 1 -2.7242 -8.9035 -2.1896 36 1 -0.5382 -2.1883 -1.2110 37 1 0.9830 -2.2547 -2.1526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118773951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:21 Heat of formation + Delta-G solvation = -112.544380 kcal Electronic energy + Delta-G solvation = -27644.152554 eV Core-core repulsion = 23304.032608 eV Total energy + Delta-G solvation = -4340.119946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.47397 -43.34378 -41.60108 -40.01747 -38.93730 -37.73107 -36.24537 -34.23339 -33.34834 -32.91260 -31.75020 -29.68795 -27.57582 -27.41308 -25.72439 -24.12496 -23.62324 -21.68170 -21.47340 -19.91488 -19.81550 -19.18402 -19.04879 -18.68374 -18.25912 -17.96425 -17.31673 -17.07146 -16.69630 -16.51888 -16.21807 -15.62933 -15.06691 -14.96816 -14.85340 -14.69987 -14.63315 -14.02901 -13.89028 -13.54339 -13.39714 -13.07250 -12.85136 -12.72329 -12.61003 -12.40333 -12.36544 -12.31251 -12.30752 -12.14035 -11.42138 -11.26796 -10.79535 -10.68928 -10.64599 -10.38638 -9.68096 -8.28693 -6.45879 -1.46369 -0.73111 0.00520 0.16841 1.26147 1.42778 1.43839 1.51648 1.68741 1.96158 2.36486 2.53175 2.87639 2.97664 3.09216 3.35980 3.38553 3.67425 3.76900 4.00724 4.02144 4.19759 4.23870 4.31096 4.39824 4.46488 4.56921 4.64240 4.92886 4.93434 4.99427 5.12515 5.21224 5.30710 5.39852 5.71755 6.00391 6.34927 6.42236 6.62006 6.79189 7.24477 7.32148 8.76704 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.003658 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.150080 B = 7651.682903 C = 8673.011604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.112 4.112 12 C 0.099 3.901 13 N -0.601 5.601 14 C 0.559 3.441 15 O -0.574 6.574 16 C -0.170 4.170 17 C 0.005 3.995 18 C -0.066 4.066 19 N 0.033 4.967 20 O -0.194 6.194 21 O -0.135 6.135 22 C 0.014 3.986 23 C -0.127 4.127 24 C 0.188 3.812 25 F -0.119 7.119 26 C 0.105 3.895 27 H 0.270 0.730 28 H 0.376 0.624 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.167 0.833 34 H 0.207 0.793 35 H 0.212 0.788 36 H 0.048 0.952 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -19.529 -4.181 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.398 6.398 11 C -0.150 4.150 12 C -0.022 4.022 13 N -0.332 5.332 14 C 0.348 3.652 15 O -0.455 6.455 16 C -0.175 4.175 17 C -0.014 4.014 18 C -0.149 4.149 19 N 0.552 4.448 20 O -0.401 6.401 21 O -0.359 6.359 22 C -0.005 4.005 23 C -0.146 4.146 24 C 0.167 3.833 25 F -0.097 7.097 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.185 0.815 34 H 0.224 0.776 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.932 -19.196 -4.165 19.737 hybrid contribution -0.057 2.159 -0.155 2.166 sum -1.989 -17.036 -4.320 17.688 Atomic orbital electron populations 1.69760 1.07227 1.28611 1.50049 1.25817 0.95707 1.02854 0.92931 0.85504 0.78286 0.78243 0.79004 1.19390 1.21236 1.19453 1.21790 0.94120 0.91061 1.52613 0.90991 1.19849 0.86643 0.93321 0.80914 1.86076 1.51516 1.54632 1.47531 1.22673 0.97395 0.93238 1.01661 1.22415 0.88026 0.95956 0.95851 1.48722 1.26469 1.09154 1.48834 1.17974 0.81226 0.87119 0.78912 1.90804 1.36152 1.67042 1.51499 1.19739 0.94340 0.93094 1.10294 1.20980 0.97936 0.92390 0.90115 1.21014 0.85990 0.92567 1.15354 1.43587 1.02590 1.01034 0.97631 1.94618 1.22624 1.66705 1.56160 1.94513 1.92178 0.96278 1.52894 1.21492 0.87223 1.03696 0.88055 1.21550 1.01451 0.90024 1.01543 1.18386 0.80171 0.91991 0.92729 1.91625 1.46256 1.83630 1.88193 1.22980 1.00629 0.77691 1.00401 0.92038 0.77469 0.88609 0.89411 0.90799 0.88762 0.81525 0.77600 0.77140 0.93350 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 10.69 21.45 0.23 -49.02 16 2 C 0.03 1.43 5.29 84.66 0.45 1.88 16 3 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -28.22 8.26 25.60 0.21 -28.01 16 8 H 0.07 3.50 7.78 -2.91 -0.02 3.47 16 9 C 0.23 10.95 0.88 -10.15 -0.01 10.94 16 10 O -0.59 -29.81 13.17 -148.98 -1.96 -31.78 16 11 C -0.11 -4.07 6.13 31.82 0.20 -3.87 16 12 C 0.10 3.13 5.91 86.76 0.51 3.64 16 13 N -0.60 -23.62 3.33 -815.16 -2.71 -26.33 16 14 C 0.56 21.60 7.22 86.74 0.63 22.23 16 15 O -0.57 -27.14 16.69 -3.93 -0.07 -27.21 16 16 C -0.17 -4.62 5.40 -20.05 -0.11 -4.72 16 17 C 0.01 0.12 7.93 22.52 0.18 0.29 16 18 C -0.07 -1.17 6.84 36.34 0.25 -0.92 16 19 N 0.03 0.70 4.45 -46.55 -0.21 0.50 16 20 O -0.19 -4.91 18.44 18.88 0.35 -4.56 16 21 O -0.13 -2.74 18.44 18.89 0.35 -2.39 16 22 C 0.01 0.14 9.55 22.32 0.21 0.36 16 23 C -0.13 -1.39 10.01 22.28 0.22 -1.16 16 24 C 0.19 4.17 7.25 22.67 0.16 4.33 16 25 F -0.12 -3.32 16.38 44.97 0.74 -2.59 16 26 C 0.11 5.00 5.53 86.85 0.48 5.48 16 27 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.38 20.12 7.25 -74.06 -0.54 19.58 16 29 H 0.10 3.19 8.03 -2.39 -0.02 3.17 16 30 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.33 5.69 -2.39 -0.01 2.32 16 33 H 0.17 3.70 5.64 -2.91 -0.02 3.68 16 34 H 0.21 0.65 7.60 -2.91 -0.02 0.63 16 35 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.05 2.67 7.42 -2.38 -0.02 2.65 16 37 H 0.05 2.67 8.03 -2.39 -0.02 2.65 16 Total: -1.00 -67.99 328.74 2.75 -65.24 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.62 Total: 24.66 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 3.38 Total: 10.46 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.69 Total: -74.85 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -1.33 Total: -65.94 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.59 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -67.99 2.75 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118773951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.302 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds