Wall clock time and date at job start Tue Mar 31 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35991 * 117.00619 * 2 1 4 4 C 1.38413 * 119.93352 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.89333 * 179.74690 * 4 3 2 6 6 C 1.38104 * 120.02208 * 0.43326 * 5 4 3 7 7 C 1.38597 * 120.41713 * 359.53945 * 6 5 4 8 8 C 1.38223 * 119.86288 * 0.32853 * 7 6 5 9 9 O 1.35943 * 121.82821 * 179.69894 * 8 7 6 10 10 C 1.42832 * 117.84939 * 17.20912 * 9 8 7 11 11 C 1.53409 * 108.35400 * 310.83388 * 10 9 8 12 12 C 1.50777 * 118.73531 * 180.47938 * 7 6 5 13 13 H 1.09006 * 109.43345 * 77.56040 * 12 7 6 14 14 O 1.45208 * 109.43016 * 317.70585 * 12 7 6 15 15 C 1.34227 * 116.99880 * 90.00032 * 14 12 7 16 16 O 1.20828 * 120.00109 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.99997 * 180.02562 * 15 14 12 18 18 S 1.81002 * 109.47166 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99848 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99561 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99528 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00454 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47165 * 90.00026 * 23 21 19 25 25 H 1.48498 * 109.46871 * 210.00053 * 23 21 19 26 26 H 1.48502 * 109.47043 * 329.99767 * 23 21 19 27 27 H 1.08997 * 109.47244 * 300.00343 * 1 2 3 28 28 H 1.09007 * 109.46861 * 59.99998 * 1 2 3 29 29 H 1.08995 * 109.47265 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.05371 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.98943 * 180.16646 * 5 4 3 32 32 H 1.08002 * 119.79420 * 179.82793 * 6 5 4 33 33 H 1.08998 * 109.68925 * 191.11333 * 10 9 8 34 34 H 1.08998 * 109.71484 * 70.56313 * 10 9 8 35 35 H 1.09002 * 109.69587 * 304.99001 * 11 10 9 36 36 H 1.09000 * 109.72896 * 184.41779 * 11 10 9 37 37 H 1.09003 * 109.46986 * 299.99447 * 17 15 14 38 38 H 1.08995 * 109.47291 * 59.99539 * 17 15 14 39 39 H 0.97004 * 119.99810 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2914 2.3717 -0.0005 5 6 1.9200 3.6029 0.0048 6 6 3.2992 3.6746 0.0015 7 6 4.0620 2.5175 0.0026 8 6 3.4400 1.2831 0.0000 9 8 4.1489 0.1231 -0.0051 10 6 5.5270 0.1817 0.3658 11 6 6.1928 1.3141 -0.4265 12 6 5.5648 2.6400 0.0100 13 1 5.9035 2.8879 1.0160 14 8 5.9683 3.6908 -0.9072 15 6 6.0681 4.9320 -0.4060 16 8 5.8258 5.1338 0.7604 17 6 6.4812 6.0740 -1.2983 18 16 6.5237 7.6065 -0.3362 19 6 7.0217 8.7408 -1.5894 20 1 7.1991 8.3903 -2.5954 21 6 7.1861 10.0846 -1.2835 22 7 7.5587 10.9318 -2.2195 23 14 6.8787 10.6909 0.4564 24 1 8.1395 10.6146 1.2372 25 1 6.4071 12.0984 0.4140 26 1 5.8450 9.8418 1.1011 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3150 -0.0005 31 1 1.3324 4.5090 0.0071 32 1 3.7864 4.6385 0.0029 33 1 6.0114 -0.7658 0.1297 34 1 5.6121 0.3815 1.4339 35 1 6.0273 1.1628 -1.4932 36 1 7.2628 1.3285 -0.2192 37 1 7.4715 5.8751 -1.7080 38 1 5.7646 6.1759 -2.1133 39 1 7.6732 11.8711 -2.0059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119224880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:04 Heat of formation + Delta-G solvation = -129.041876 kcal Electronic energy + Delta-G solvation = -24797.670176 eV Core-core repulsion = 20990.755270 eV Total energy + Delta-G solvation = -3806.914906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38851 -40.11908 -38.98448 -37.07690 -36.39851 -33.29390 -32.51974 -30.99448 -29.91042 -29.82039 -27.53376 -25.81315 -25.54431 -23.96191 -22.34451 -21.36258 -20.33725 -18.51282 -18.08624 -17.58810 -17.41632 -16.95394 -16.40325 -16.12171 -15.80306 -15.24549 -15.04788 -15.01707 -14.78014 -14.31054 -14.17271 -13.54238 -13.40567 -13.16961 -13.01103 -12.84032 -12.73708 -12.28786 -12.01724 -11.86912 -11.50033 -11.36596 -11.27964 -11.11223 -11.07989 -11.02606 -10.74618 -10.53572 -10.22110 -9.90911 -9.08389 -8.77917 -8.65837 -8.02132 -7.06105 -6.36187 -4.10920 0.97836 1.27546 2.33788 2.41182 2.94539 3.00642 3.10441 3.26786 3.42476 3.45781 3.59107 4.24822 4.25978 4.32837 4.43700 4.58196 4.68717 4.74845 4.82091 4.88862 4.89466 4.99312 5.02563 5.10940 5.19259 5.21268 5.23846 5.29712 5.45293 5.53599 5.60576 5.69536 5.90971 5.98052 6.18218 6.36578 6.45672 6.50308 6.83522 7.36536 7.86573 7.93250 8.35587 9.08706 10.72847 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002947 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.668429 B = 9497.801124 C =10278.098050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.095 3.905 4 C -0.173 4.173 5 C -0.109 4.109 6 C -0.101 4.101 7 C -0.146 4.146 8 C 0.115 3.885 9 O -0.304 6.304 10 C 0.066 3.934 11 C -0.157 4.157 12 C 0.136 3.864 13 H 0.102 0.898 14 O -0.342 6.342 15 C 0.476 3.524 16 O -0.485 6.485 17 C -0.101 4.101 18 S -0.138 6.138 19 C -0.523 4.523 20 H 0.092 0.908 21 C 0.097 3.903 22 N -0.876 5.876 23 Si 0.856 3.144 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.236 1.236 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 -22.867 4.434 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.050 3.950 4 C -0.191 4.191 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.147 4.147 8 C 0.070 3.930 9 O -0.218 6.218 10 C -0.009 4.009 11 C -0.195 4.195 12 C 0.081 3.919 13 H 0.119 0.881 14 O -0.260 6.260 15 C 0.318 3.682 16 O -0.370 6.370 17 C -0.249 4.249 18 S 0.088 5.912 19 C -0.670 4.670 20 H 0.110 0.890 21 C -0.112 4.112 22 N -0.512 5.512 23 Si 0.681 3.319 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.160 1.160 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.563 -22.851 5.790 25.832 hybrid contribution 0.130 0.733 -0.612 0.964 sum -10.433 -22.118 5.178 24.997 Atomic orbital electron populations 1.23059 0.78682 1.03866 1.01256 1.86149 1.20876 1.25872 1.89149 1.18320 0.89127 0.85212 1.02364 1.21088 0.99949 0.91574 1.06525 1.20867 0.94296 0.97288 1.00294 1.21057 0.93927 0.98008 0.98960 1.19816 0.95620 0.92295 1.07004 1.17747 0.87974 0.84915 1.02359 1.86084 1.23218 1.28432 1.84112 1.22988 0.79303 0.99815 0.98788 1.22330 1.01665 0.92405 1.03068 1.21261 0.89542 0.86345 0.94801 0.88066 1.86656 1.79378 1.17214 1.42762 1.23375 0.73651 0.83134 0.88059 1.90680 1.44898 1.83601 1.17854 1.23040 1.06159 0.94154 1.01531 1.84796 1.90660 0.98091 1.17613 1.22258 1.53528 0.94227 0.97016 0.89025 1.24698 0.93225 0.95501 0.97766 1.69934 1.44401 1.03849 1.33057 0.86751 0.80871 0.79752 0.84552 1.19125 1.19778 1.15956 0.92741 0.92707 0.88268 0.84672 0.85053 0.85146 0.86452 0.91413 0.88805 0.88543 0.87073 0.87043 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.61 10.21 -35.80 -0.37 -3.97 16 3 C 0.10 1.21 6.70 -39.03 -0.26 0.95 16 4 C -0.17 -1.94 9.03 -39.51 -0.36 -2.30 16 5 C -0.11 -1.36 10.04 -39.63 -0.40 -1.76 16 6 C -0.10 -1.49 9.13 -39.50 -0.36 -1.85 16 7 C -0.15 -2.06 5.58 -104.46 -0.58 -2.64 16 8 C 0.12 1.57 6.48 -39.10 -0.25 1.32 16 9 O -0.30 -3.80 10.00 -35.65 -0.36 -4.16 16 10 C 0.07 0.58 7.03 37.37 0.26 0.84 16 11 C -0.16 -1.53 5.85 -26.49 -0.16 -1.68 16 12 C 0.14 1.80 2.69 -27.82 -0.07 1.73 16 13 H 0.10 1.38 7.15 -51.93 -0.37 1.01 16 14 O -0.34 -5.24 9.65 -39.25 -0.38 -5.62 16 15 C 0.48 8.42 6.41 36.00 0.23 8.65 16 16 O -0.48 -9.56 13.82 -18.75 -0.26 -9.82 16 17 C -0.10 -1.92 6.27 36.00 0.23 -1.70 16 18 S -0.14 -3.34 18.55 -107.50 -1.99 -5.33 16 19 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 20 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -25.90 13.97 55.49 0.78 -25.13 16 23 Si 0.86 21.11 27.74 -169.99 -4.71 16.39 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.14 1.11 6.28 -52.48 -0.33 0.78 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.13 2.14 5.16 -52.49 -0.27 1.87 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 1.98 8.14 -51.91 -0.42 1.55 16 38 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -33.26 340.77 -7.40 -40.66 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.73 Total: 0.73 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.52 Total: -8.89 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.78 Total: -25.13 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.36 Total: -23.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.26 -7.40 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119224880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.382 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds