Wall clock time and date at job start Tue Mar 31 2020 13:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 116.99661 * 2 1 4 4 C 1.38407 * 119.94191 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.89457 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.02395 * 0.09366 * 5 4 3 7 7 C 1.38597 * 120.41908 * 359.96338 * 6 5 4 8 8 C 1.38232 * 119.85840 * 359.87393 * 7 6 5 9 9 O 1.35936 * 121.83286 * 180.26732 * 8 7 6 10 10 C 1.42835 * 117.84263 * 342.88462 * 9 8 7 11 11 C 1.53415 * 108.34615 * 49.16160 * 10 9 8 12 12 C 1.50775 * 118.73544 * 179.83019 * 7 6 5 13 13 H 1.09000 * 109.43233 * 282.41979 * 12 7 6 14 14 O 1.45201 * 109.39736 * 42.30266 * 12 7 6 15 15 C 1.34223 * 116.99993 * 270.20997 * 14 12 7 16 16 O 1.20829 * 120.00187 * 359.97438 * 15 14 12 17 17 C 1.50698 * 119.99878 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.47374 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00203 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00235 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99514 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47057 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47094 * 119.99507 * 23 21 19 26 26 H 1.48493 * 109.46915 * 239.99540 * 23 21 19 27 27 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47255 * 300.00615 * 1 2 3 29 29 H 1.09002 * 109.47025 * 60.00005 * 1 2 3 30 30 H 1.08003 * 120.05502 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.98634 * 180.08872 * 5 4 3 32 32 H 1.08004 * 119.79520 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.68342 * 168.87192 * 10 9 8 34 34 H 1.08994 * 109.68940 * 289.44440 * 10 9 8 35 35 H 1.08994 * 109.70009 * 54.97195 * 11 10 9 36 36 H 1.08996 * 109.69655 * 175.56880 * 11 10 9 37 37 H 1.09001 * 109.47121 * 299.99944 * 17 15 14 38 38 H 1.08999 * 109.47663 * 59.99780 * 17 15 14 39 39 H 0.97006 * 120.00114 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2913 2.3717 0.0005 5 6 1.9199 3.6030 0.0011 6 6 3.2990 3.6748 -0.0009 7 6 4.0620 2.5177 -0.0026 8 6 3.4400 1.2833 0.0002 9 8 4.1487 0.1233 0.0041 10 6 5.5269 0.1824 -0.3666 11 6 6.1923 1.3140 0.4272 12 6 5.5647 2.6403 -0.0086 13 1 5.9042 2.8891 -1.0141 14 8 5.9666 3.6901 0.9104 15 6 6.0622 4.9327 0.4120 16 8 5.8185 5.1365 -0.7538 17 6 6.4744 6.0735 1.3062 18 16 6.5095 7.6088 0.3482 19 6 7.0063 8.7413 1.6032 20 1 7.1863 8.3890 2.6081 21 6 7.1654 10.0867 1.3006 22 7 6.9455 10.5162 0.0760 23 14 7.6914 11.2875 2.6313 24 1 7.8725 10.5586 3.9123 25 1 8.9725 11.9290 2.2409 26 1 6.6468 12.3295 2.7986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2127 2.3151 0.0014 31 1 1.3321 4.5091 0.0029 32 1 3.7863 4.6387 0.0000 33 1 6.0113 -0.7654 -0.1314 34 1 5.6117 0.3836 -1.4344 35 1 6.0261 1.1618 1.4936 36 1 7.2623 1.3282 0.2200 37 1 5.7594 6.1717 2.1230 38 1 7.4661 5.8762 1.7133 39 1 7.0563 11.4564 -0.1355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119224881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:07 Heat of formation + Delta-G solvation = -129.743376 kcal Electronic energy + Delta-G solvation = -24739.473406 eV Core-core repulsion = 20932.528081 eV Total energy + Delta-G solvation = -3806.945325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32316 -40.02255 -38.93227 -37.01690 -36.29194 -33.22506 -32.51347 -30.93875 -29.85642 -29.66725 -27.49316 -25.74300 -25.41976 -23.90748 -22.28679 -21.24107 -20.27663 -18.45205 -18.04520 -17.54700 -17.31913 -16.89147 -16.32430 -16.06313 -15.73141 -15.17603 -14.97221 -14.87279 -14.72806 -14.22406 -14.19347 -13.49559 -13.35922 -13.11399 -12.90155 -12.70735 -12.60637 -12.21808 -11.94672 -11.80758 -11.43144 -11.22333 -11.11810 -11.10797 -11.05575 -10.97272 -10.81331 -10.45290 -10.06137 -9.91630 -9.15090 -8.72396 -8.39678 -7.97192 -6.63916 -6.30397 -4.03184 1.03489 1.32859 2.53146 2.55059 3.04832 3.06371 3.17850 3.22208 3.27469 3.43566 3.65492 4.11848 4.31796 4.38758 4.51883 4.68636 4.74130 4.86449 4.92113 4.93815 5.03391 5.05775 5.16702 5.21324 5.23849 5.24787 5.33712 5.42744 5.54782 5.59033 5.72826 5.76546 6.02691 6.04331 6.24620 6.42746 6.51712 6.61060 6.87885 7.41150 7.53173 8.06631 8.27839 9.15480 10.77111 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.002780 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.854219 B =10070.991100 C =10841.644137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.094 3.906 4 C -0.173 4.173 5 C -0.109 4.109 6 C -0.101 4.101 7 C -0.146 4.146 8 C 0.115 3.885 9 O -0.305 6.305 10 C 0.066 3.934 11 C -0.157 4.157 12 C 0.135 3.865 13 H 0.102 0.898 14 O -0.345 6.345 15 C 0.477 3.523 16 O -0.483 6.483 17 C -0.130 4.130 18 S -0.057 6.057 19 C -0.536 4.536 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.922 3.078 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -21.409 0.439 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.049 3.951 4 C -0.192 4.192 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.147 4.147 8 C 0.069 3.931 9 O -0.219 6.219 10 C -0.009 4.009 11 C -0.194 4.194 12 C 0.080 3.920 13 H 0.119 0.881 14 O -0.263 6.263 15 C 0.318 3.682 16 O -0.368 6.368 17 C -0.278 4.278 18 S 0.170 5.830 19 C -0.684 4.684 20 H 0.095 0.905 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.748 3.252 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.014 -21.432 -1.102 23.276 hybrid contribution 0.467 0.994 1.967 2.253 sum -8.547 -20.438 0.865 22.171 Atomic orbital electron populations 1.23054 0.78728 1.03822 1.01249 1.86149 1.20843 1.25901 1.89190 1.18315 0.89125 0.85185 1.02478 1.21081 0.99917 0.91585 1.06594 1.20875 0.94318 0.97274 1.00286 1.21088 0.93921 0.98093 0.98779 1.19837 0.95688 0.92268 1.06895 1.17751 0.87959 0.84916 1.02427 1.86078 1.23217 1.28440 1.84161 1.22991 0.79313 0.99796 0.98809 1.22325 1.01646 0.92478 1.02974 1.21242 0.89493 0.86422 0.94860 0.88079 1.86658 1.79526 1.17293 1.42815 1.23412 0.73638 0.82954 0.88147 1.90683 1.44694 1.83530 1.17896 1.23332 1.05322 0.96687 1.02450 1.85407 1.89896 0.93339 1.14392 1.22879 1.53814 0.94501 0.97174 0.90521 1.25008 0.94730 0.97461 0.96335 1.70019 1.45745 1.16038 1.18404 0.86066 0.78342 0.80082 0.80730 1.19492 1.20495 1.20496 0.88302 0.92739 0.92740 0.84706 0.85039 0.85035 0.86506 0.91401 0.88885 0.88589 0.87829 0.87806 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.72 10.21 -35.81 -0.37 -4.09 16 3 C 0.09 1.24 6.70 -39.03 -0.26 0.98 16 4 C -0.17 -2.02 9.03 -39.52 -0.36 -2.38 16 5 C -0.11 -1.42 10.04 -39.63 -0.40 -1.82 16 6 C -0.10 -1.54 9.12 -39.50 -0.36 -1.90 16 7 C -0.15 -2.14 5.58 -104.45 -0.58 -2.73 16 8 C 0.11 1.62 6.48 -39.10 -0.25 1.37 16 9 O -0.30 -3.94 10.00 -35.63 -0.36 -4.29 16 10 C 0.07 0.61 7.03 37.37 0.26 0.87 16 11 C -0.16 -1.60 5.85 -26.48 -0.15 -1.76 16 12 C 0.14 1.88 2.69 -27.81 -0.07 1.81 16 13 H 0.10 1.45 7.16 -51.93 -0.37 1.08 16 14 O -0.34 -5.54 9.65 -39.24 -0.38 -5.92 16 15 C 0.48 8.91 6.41 36.00 0.23 9.14 16 16 O -0.48 -10.12 13.81 -18.75 -0.26 -10.38 16 17 C -0.13 -2.60 6.27 36.00 0.23 -2.37 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 20 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 23 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.14 1.16 6.28 -52.48 -0.33 0.83 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.13 2.27 5.14 -52.48 -0.27 2.00 16 33 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.93 8.14 -51.91 -0.42 1.51 16 38 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -33.57 343.41 -7.91 -41.49 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.69 Total: 0.65 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.53 Total: -10.16 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.73 Total: -24.73 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.36 Total: -24.67 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.57 -7.91 -41.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119224881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.258 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds