Wall clock time and date at job start Tue Mar 31 2020 13:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 116.99661 * 2 1 4 4 C 1.38407 * 119.94191 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.89457 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.02395 * 0.09366 * 5 4 3 7 7 C 1.38597 * 120.41908 * 359.96338 * 6 5 4 8 8 C 1.38232 * 119.85840 * 359.87393 * 7 6 5 9 9 O 1.35936 * 121.83286 * 180.26732 * 8 7 6 10 10 C 1.42835 * 117.84263 * 342.88462 * 9 8 7 11 11 C 1.53415 * 108.34615 * 49.16160 * 10 9 8 12 12 C 1.50775 * 118.73544 * 179.83019 * 7 6 5 13 13 H 1.09000 * 109.43233 * 282.41979 * 12 7 6 14 14 O 1.45201 * 109.39736 * 42.30266 * 12 7 6 15 15 C 1.34223 * 116.99993 * 270.20997 * 14 12 7 16 16 O 1.20829 * 120.00187 * 359.97438 * 15 14 12 17 17 C 1.50698 * 119.99878 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.47374 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00203 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00235 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99514 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47057 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47094 * 119.99507 * 23 21 19 26 26 H 1.48493 * 109.46915 * 239.99540 * 23 21 19 27 27 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47255 * 300.00615 * 1 2 3 29 29 H 1.09002 * 109.47025 * 60.00005 * 1 2 3 30 30 H 1.08003 * 120.05502 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.98634 * 180.08872 * 5 4 3 32 32 H 1.08004 * 119.79520 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.68342 * 168.87192 * 10 9 8 34 34 H 1.08994 * 109.68940 * 289.44440 * 10 9 8 35 35 H 1.08994 * 109.70009 * 54.97195 * 11 10 9 36 36 H 1.08996 * 109.69655 * 175.56880 * 11 10 9 37 37 H 1.09001 * 109.47121 * 299.99944 * 17 15 14 38 38 H 1.08999 * 109.47663 * 59.99780 * 17 15 14 39 39 H 0.97006 * 120.00114 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2913 2.3717 0.0005 5 6 1.9199 3.6030 0.0011 6 6 3.2990 3.6748 -0.0009 7 6 4.0620 2.5177 -0.0026 8 6 3.4400 1.2833 0.0002 9 8 4.1487 0.1233 0.0041 10 6 5.5269 0.1824 -0.3666 11 6 6.1923 1.3140 0.4272 12 6 5.5647 2.6403 -0.0086 13 1 5.9042 2.8891 -1.0141 14 8 5.9666 3.6901 0.9104 15 6 6.0622 4.9327 0.4120 16 8 5.8185 5.1365 -0.7538 17 6 6.4744 6.0735 1.3062 18 16 6.5095 7.6088 0.3482 19 6 7.0063 8.7413 1.6032 20 1 7.1863 8.3890 2.6081 21 6 7.1654 10.0867 1.3006 22 7 6.9455 10.5162 0.0760 23 14 7.6914 11.2875 2.6313 24 1 7.8725 10.5586 3.9123 25 1 8.9725 11.9290 2.2409 26 1 6.6468 12.3295 2.7986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2127 2.3151 0.0014 31 1 1.3321 4.5091 0.0029 32 1 3.7863 4.6387 0.0000 33 1 6.0113 -0.7654 -0.1314 34 1 5.6117 0.3836 -1.4344 35 1 6.0261 1.1618 1.4936 36 1 7.2623 1.3282 0.2200 37 1 5.7594 6.1717 2.1230 38 1 7.4661 5.8762 1.7133 39 1 7.0563 11.4564 -0.1355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119224881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:06 Heat of formation + Delta-G solvation = -149.716887 kcal Electronic energy + Delta-G solvation = -24740.339522 eV Core-core repulsion = 20932.528081 eV Total energy + Delta-G solvation = -3807.811442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41040 -41.27169 -39.84136 -38.05104 -37.59427 -34.61892 -34.25553 -31.89540 -31.23728 -30.79165 -28.19055 -27.73851 -26.54352 -24.83985 -23.30561 -22.61762 -21.23483 -19.96470 -19.43961 -18.76026 -18.51839 -17.90929 -17.50368 -17.21520 -16.90469 -16.80686 -16.16021 -16.02400 -15.86428 -15.70422 -15.36017 -14.69516 -14.50548 -14.24074 -14.13029 -14.04013 -13.80045 -13.25483 -13.19809 -12.95193 -12.90946 -12.74373 -12.67366 -12.35728 -12.11297 -11.99524 -11.84245 -11.73880 -11.63917 -11.48642 -11.18252 -10.39071 -9.73334 -8.95235 -8.74186 -8.38520 -6.17840 0.00992 0.29045 0.98999 1.04973 1.40345 1.41499 1.55426 1.80283 2.20972 2.22602 2.26247 2.58561 2.96757 3.23710 3.33893 3.46818 3.59180 3.64404 3.89607 3.96022 4.08404 4.13623 4.17617 4.25460 4.33159 4.40962 4.42190 4.42315 4.50269 4.56837 4.75091 4.76506 4.86089 5.03786 5.18286 5.26422 5.40561 5.40898 5.52286 6.03195 6.17605 6.51113 6.60770 7.03623 8.70850 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.002780 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.854219 B =10070.991100 C =10841.644137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.089 3.911 4 C -0.164 4.164 5 C -0.113 4.113 6 C -0.129 4.129 7 C -0.160 4.160 8 C 0.104 3.896 9 O -0.316 6.316 10 C 0.063 3.937 11 C -0.149 4.149 12 C 0.128 3.872 13 H 0.091 0.909 14 O -0.338 6.338 15 C 0.487 3.513 16 O -0.510 6.510 17 C -0.110 4.110 18 S -0.130 6.130 19 C -0.548 4.548 20 H 0.085 0.915 21 C 0.016 3.984 22 N -0.909 5.909 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.274 1.274 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 -23.069 1.918 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.043 3.957 4 C -0.183 4.183 5 C -0.131 4.131 6 C -0.148 4.148 7 C -0.161 4.161 8 C 0.059 3.941 9 O -0.231 6.231 10 C -0.012 4.012 11 C -0.186 4.186 12 C 0.073 3.927 13 H 0.109 0.891 14 O -0.255 6.255 15 C 0.330 3.670 16 O -0.398 6.398 17 C -0.259 4.259 18 S 0.097 5.903 19 C -0.695 4.695 20 H 0.103 0.897 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.199 1.199 27 H 0.139 0.861 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.171 0.829 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.476 -23.127 0.386 24.996 hybrid contribution 0.508 1.310 1.475 2.037 sum -8.968 -21.817 1.860 23.662 Atomic orbital electron populations 1.23406 0.76302 1.05768 1.02395 1.86132 1.23381 1.25359 1.88918 1.18544 0.89208 0.86115 1.01818 1.21384 1.01485 0.90416 1.04986 1.21093 0.93578 0.98675 0.99779 1.21034 0.95204 0.97267 1.01247 1.19888 0.95942 0.92525 1.07758 1.17905 0.88794 0.84908 1.02522 1.86061 1.24835 1.27945 1.84220 1.23328 0.77736 1.01008 0.99082 1.22379 1.02848 0.90406 1.02976 1.21587 0.89848 0.87086 0.94155 0.89073 1.86616 1.79065 1.16596 1.43196 1.23037 0.73041 0.83615 0.87335 1.90674 1.45991 1.84090 1.19041 1.23117 1.06977 0.94020 1.01753 1.85501 1.90189 0.97407 1.17202 1.23219 1.53726 0.95114 0.97475 0.89700 1.26103 0.94478 0.99488 0.98805 1.70164 1.46971 1.16655 1.20764 0.84895 0.77964 0.77287 0.77765 1.18117 1.19849 1.19890 0.86141 0.91542 0.91523 0.81400 0.83573 0.87700 0.82894 0.90737 0.89001 0.86221 0.86336 0.85894 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.24 10.21 -78.08 -0.80 -8.04 16 3 C 0.09 2.24 6.70 22.63 0.15 2.39 16 4 C -0.16 -3.59 9.03 22.31 0.20 -3.39 16 5 C -0.11 -2.92 10.04 22.24 0.22 -2.70 16 6 C -0.13 -4.10 9.12 22.32 0.20 -3.89 16 7 C -0.16 -4.76 5.58 -19.76 -0.11 -4.87 16 8 C 0.10 2.88 6.48 22.58 0.15 3.03 16 9 O -0.32 -7.74 10.00 -77.43 -0.77 -8.52 16 10 C 0.06 1.03 7.03 72.12 0.51 1.53 16 11 C -0.15 -2.81 5.85 30.76 0.18 -2.63 16 12 C 0.13 3.57 2.69 29.89 0.08 3.65 16 13 H 0.09 2.70 7.16 -2.39 -0.02 2.68 16 14 O -0.34 -10.85 9.65 -51.35 -0.50 -11.34 16 15 C 0.49 18.58 6.41 71.24 0.46 19.03 16 16 O -0.51 -22.30 13.81 21.96 0.30 -22.00 16 17 C -0.11 -4.43 6.27 71.24 0.45 -3.99 16 18 S -0.13 -6.98 20.57 -56.49 -1.16 -8.14 16 19 C -0.55 -30.54 9.50 67.96 0.65 -29.89 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.02 0.91 5.49 84.86 0.47 1.38 16 22 N -0.91 -54.47 13.22 21.65 0.29 -54.18 16 23 Si 1.00 42.81 29.55 68.60 2.03 44.83 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 29 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 30 H 0.17 2.41 6.28 -2.91 -0.02 2.39 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.10 3.86 5.14 -2.91 -0.01 3.84 16 33 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 4.40 8.14 -2.40 -0.02 4.38 16 38 H 0.12 4.46 8.14 -2.40 -0.02 4.44 16 39 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -74.88 343.41 5.18 -69.70 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.08 Total: 16.72 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.71 Total: -19.04 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.29 Total: -54.18 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -1.76 Total: -49.90 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.16 Total: -8.14 kcal Total: -74.88 5.18 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119224881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.020 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds