Wall clock time and date at job start Tue Mar 31 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99621 * 2 1 4 4 C 1.50708 * 108.85064 * 305.80024 * 3 2 1 5 5 O 1.20829 * 119.99730 * 143.77690 * 4 3 2 6 6 O 1.34261 * 120.00012 * 323.77661 * 4 3 2 7 7 C 1.35919 * 117.00038 * 185.11902 * 6 4 3 8 8 C 1.38822 * 120.02085 * 255.17676 * 7 6 4 9 9 C 1.38197 * 120.08356 * 179.76765 * 8 7 6 10 10 C 1.38153 * 120.11699 * 0.50787 * 9 8 7 11 11 C 1.38887 * 120.04352 * 359.48933 * 10 9 8 12 12 O 1.35754 * 120.03869 * 180.22817 * 11 10 9 13 13 C 1.34832 * 116.99827 * 174.48510 * 12 11 10 14 14 H 1.08003 * 120.00333 * 5.05575 * 13 12 11 15 15 C 1.38652 * 120.00217 * 185.05716 * 13 12 11 16 16 N 1.31559 * 119.99809 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47189 * 90.00078 * 17 15 13 19 19 H 1.48506 * 109.46986 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.46884 * 329.99834 * 17 15 13 21 21 C 1.38570 * 120.02397 * 75.19905 * 7 6 4 22 22 C 1.52936 * 108.77834 * 64.31262 * 3 2 1 23 23 C 1.55160 * 108.95758 * 90.61855 * 22 3 2 24 24 S 1.83976 * 100.91172 * 41.43925 * 23 22 3 25 25 C 1.53712 * 108.88706 * 187.22570 * 3 2 1 26 26 H 1.09005 * 109.47480 * 64.82159 * 1 2 3 27 27 H 1.08997 * 109.47113 * 184.81753 * 1 2 3 28 28 H 1.09002 * 109.47133 * 304.81614 * 1 2 3 29 29 H 1.07998 * 119.96105 * 0.02562 * 8 7 6 30 30 H 1.07995 * 119.93893 * 180.28018 * 9 8 7 31 31 H 1.08002 * 119.97359 * 179.76645 * 10 9 8 32 32 H 0.97005 * 119.99872 * 180.02562 * 16 15 13 33 33 H 1.08008 * 120.05745 * 359.97438 * 21 7 6 34 34 H 1.09007 * 109.60564 * 210.54184 * 22 3 2 35 35 H 1.08994 * 109.60909 * 330.69047 * 22 3 2 36 36 H 1.09003 * 111.12875 * 283.52125 * 23 22 3 37 37 H 1.09003 * 111.16522 * 159.36664 * 23 22 3 38 38 H 1.08992 * 110.33824 * 1.04770 * 25 3 2 39 39 H 1.08999 * 110.33739 * 123.19101 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4460 2.0896 -1.1568 5 8 1.2323 3.2729 -1.0375 6 8 1.1808 1.4734 -2.3198 7 6 0.7753 2.2561 -3.3544 8 6 -0.5594 2.2664 -3.7359 9 6 -0.9740 3.0653 -4.7845 10 6 -0.0600 3.8480 -5.4631 11 6 1.2766 3.8417 -5.0857 12 8 2.1738 4.6144 -5.7496 13 6 3.4304 4.6497 -5.2619 14 1 3.7052 4.0168 -4.4311 15 6 4.3698 5.4985 -5.8271 16 7 4.0350 6.2699 -6.8388 17 14 6.1109 5.5468 -5.1519 18 1 6.9470 4.5496 -5.8671 19 1 6.6810 6.9037 -5.3497 20 1 6.0887 5.2257 -3.7022 21 6 1.6939 3.0439 -4.0294 22 6 1.6370 2.0105 1.3049 23 6 2.7301 1.7179 2.3664 24 16 4.2547 1.8753 1.3488 25 6 3.5306 1.1733 -0.1829 26 1 -0.3634 0.4372 -0.9300 27 1 -0.3633 -1.0240 0.0863 28 1 -0.3633 0.5867 0.8437 29 1 -1.2755 1.6524 -3.2098 30 1 -2.0137 3.0749 -5.0764 31 1 -0.3859 4.4687 -6.2847 32 1 4.6924 6.8635 -7.2345 33 1 2.7328 3.0372 -3.7339 34 1 1.5714 3.0851 1.1342 35 1 0.6751 1.6397 1.6588 36 1 2.6280 0.7097 2.7680 37 1 2.7122 2.4599 3.1647 38 1 3.8098 0.1250 -0.2881 39 1 3.8582 1.7411 -1.0537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119410858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:30 Heat of formation + Delta-G solvation = -104.590900 kcal Electronic energy + Delta-G solvation = -25633.711543 eV Core-core repulsion = 21827.856911 eV Total energy + Delta-G solvation = -3805.854632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52054 -39.43646 -38.49172 -37.17370 -35.86885 -34.24108 -32.36223 -30.59937 -29.77196 -28.97701 -26.88127 -26.11158 -25.47011 -23.92167 -21.88888 -21.39703 -20.08517 -18.73226 -18.25917 -17.76829 -17.24753 -16.54953 -16.25825 -15.84353 -15.34823 -15.17658 -14.90984 -14.50618 -14.30743 -14.18939 -13.83658 -13.58375 -13.51978 -13.20681 -12.78844 -12.61852 -12.47707 -12.35045 -12.26718 -11.96666 -11.64233 -11.47152 -11.35052 -11.11633 -10.93495 -10.75300 -10.52759 -10.42075 -10.39133 -9.96345 -9.58559 -8.92362 -8.26400 -7.95406 -7.43685 -6.53197 -4.12990 1.42540 1.59461 1.83327 2.06863 2.12747 2.67322 3.09709 3.11906 3.16540 3.27528 3.91144 3.96344 4.18735 4.30539 4.46043 4.60837 4.73540 4.85842 4.98815 5.00994 5.11547 5.13400 5.15935 5.26108 5.41132 5.46733 5.51969 5.60795 5.67130 5.91183 6.06665 6.13502 6.46155 6.50454 6.74123 6.87700 7.00086 7.04505 7.25189 7.46159 7.88813 7.94626 8.91738 9.56319 10.63949 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.004666 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.856432 B = 5999.380167 C = 8015.738641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.355 6.355 3 C 0.136 3.864 4 C 0.433 3.567 5 O -0.465 6.465 6 O -0.282 6.282 7 C 0.115 3.885 8 C -0.211 4.211 9 C -0.064 4.064 10 C -0.184 4.184 11 C 0.165 3.835 12 O -0.168 6.168 13 C -0.394 4.394 14 H 0.090 0.910 15 C 0.043 3.957 16 N -0.858 5.858 17 Si 0.939 3.061 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.266 1.266 21 C -0.234 4.234 22 C -0.155 4.155 23 C -0.063 4.063 24 S -0.262 6.262 25 C -0.062 4.062 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.272 0.728 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 -11.540 15.763 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.274 6.274 3 C 0.093 3.907 4 C 0.273 3.727 5 O -0.349 6.349 6 O -0.197 6.197 7 C 0.075 3.925 8 C -0.230 4.230 9 C -0.082 4.082 10 C -0.204 4.204 11 C 0.110 3.890 12 O -0.071 6.071 13 C -0.470 4.470 14 H 0.108 0.892 15 C -0.162 4.162 16 N -0.492 5.492 17 Si 0.763 3.237 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.254 4.254 22 C -0.194 4.194 23 C -0.211 4.211 24 S -0.035 6.035 25 C -0.210 4.210 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.691 -10.567 15.680 19.482 hybrid contribution -0.434 -0.190 -0.048 0.477 sum -5.126 -10.757 15.632 19.656 Atomic orbital electron populations 1.23112 0.80072 1.03932 1.01160 1.88079 1.20699 1.24106 1.94519 1.22081 0.93948 0.83915 0.90737 1.24515 0.76019 0.87744 0.84373 1.90741 1.45741 1.16124 1.82254 1.84627 1.76635 1.39704 1.18705 1.18275 0.92703 0.94130 0.87393 1.20470 0.93166 1.05924 1.03443 1.20495 0.98444 0.94744 0.94537 1.20347 0.90702 1.05079 1.04234 1.19094 0.90141 0.90019 0.89725 1.84001 1.19277 1.56883 1.46916 1.21306 0.83467 1.24772 1.17474 0.89214 1.25290 0.99995 0.94898 0.95996 1.70032 1.35337 1.22470 1.21326 0.85734 0.80244 0.78314 0.79396 1.19653 1.19992 1.18995 1.21173 1.00338 1.02186 1.01655 1.23021 1.00394 1.04403 0.91549 1.24293 0.91800 1.05997 0.98998 1.88032 1.21677 1.83949 1.09873 1.23932 0.90732 1.06916 0.99394 0.92616 0.88232 0.93224 0.86886 0.85901 0.85759 0.91811 0.85112 0.86913 0.88286 0.88321 0.86662 0.85812 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.23 101.05 1.03 1.16 16 2 O -0.36 -4.13 10.00 -49.46 -0.49 -4.62 16 3 C 0.14 1.72 0.97 -91.43 -0.09 1.63 16 4 C 0.43 7.14 5.07 36.01 0.18 7.32 16 5 O -0.47 -9.03 15.10 -18.75 -0.28 -9.32 16 6 O -0.28 -5.00 8.66 -28.85 -0.25 -5.25 16 7 C 0.12 2.32 5.10 -39.24 -0.20 2.12 16 8 C -0.21 -3.77 9.99 -39.38 -0.39 -4.17 16 9 C -0.06 -1.12 10.03 -39.63 -0.40 -1.52 16 10 C -0.18 -3.83 9.99 -39.37 -0.39 -4.23 16 11 C 0.16 4.03 6.64 -39.13 -0.26 3.77 16 12 O -0.17 -4.79 9.76 0.03 0.00 -4.79 16 13 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 14 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 15 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 16 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 17 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.23 -5.36 8.77 -39.25 -0.34 -5.70 16 22 C -0.16 -1.60 5.27 -25.62 -0.13 -1.74 16 23 C -0.06 -0.55 7.52 38.30 0.29 -0.26 16 24 S -0.26 -3.16 23.22 -107.50 -2.50 -5.66 16 25 C -0.06 -0.77 6.76 37.53 0.25 -0.52 16 26 H 0.06 0.61 6.38 -51.93 -0.33 0.28 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.38 5.97 -51.93 -0.31 0.07 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.13 3.08 5.64 -52.48 -0.30 2.78 16 34 H 0.11 1.36 6.77 -51.93 -0.35 1.01 16 35 H 0.10 0.81 5.74 -51.93 -0.30 0.52 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.35 7.92 -51.93 -0.41 0.94 16 39 H 0.12 1.59 7.63 -51.93 -0.40 1.20 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -32.58 340.77 -7.25 -39.83 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.34 Total: 5.06 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.26 Total: -11.87 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.76 Total: -24.25 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.03 Total: -23.99 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.50 Total: -5.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.58 -7.25 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119410858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.766 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds