Wall clock time and date at job start Tue Mar 31 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99621 * 2 1 4 4 C 1.50708 * 108.85064 * 305.80024 * 3 2 1 5 5 O 1.20829 * 119.99730 * 143.77690 * 4 3 2 6 6 O 1.34261 * 120.00012 * 323.77661 * 4 3 2 7 7 C 1.35919 * 117.00038 * 185.11902 * 6 4 3 8 8 C 1.38822 * 120.02085 * 255.17676 * 7 6 4 9 9 C 1.38197 * 120.08356 * 179.76765 * 8 7 6 10 10 C 1.38153 * 120.11699 * 0.50787 * 9 8 7 11 11 C 1.38887 * 120.04352 * 359.48933 * 10 9 8 12 12 O 1.35754 * 120.03869 * 180.22817 * 11 10 9 13 13 C 1.34832 * 116.99827 * 174.48510 * 12 11 10 14 14 H 1.08003 * 120.00333 * 5.05575 * 13 12 11 15 15 C 1.38652 * 120.00217 * 185.05716 * 13 12 11 16 16 N 1.31559 * 119.99809 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47189 * 90.00078 * 17 15 13 19 19 H 1.48506 * 109.46986 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.46884 * 329.99834 * 17 15 13 21 21 C 1.38570 * 120.02397 * 75.19905 * 7 6 4 22 22 C 1.52936 * 108.77834 * 64.31262 * 3 2 1 23 23 C 1.55160 * 108.95758 * 90.61855 * 22 3 2 24 24 S 1.83976 * 100.91172 * 41.43925 * 23 22 3 25 25 C 1.53712 * 108.88706 * 187.22570 * 3 2 1 26 26 H 1.09005 * 109.47480 * 64.82159 * 1 2 3 27 27 H 1.08997 * 109.47113 * 184.81753 * 1 2 3 28 28 H 1.09002 * 109.47133 * 304.81614 * 1 2 3 29 29 H 1.07998 * 119.96105 * 0.02562 * 8 7 6 30 30 H 1.07995 * 119.93893 * 180.28018 * 9 8 7 31 31 H 1.08002 * 119.97359 * 179.76645 * 10 9 8 32 32 H 0.97005 * 119.99872 * 180.02562 * 16 15 13 33 33 H 1.08008 * 120.05745 * 359.97438 * 21 7 6 34 34 H 1.09007 * 109.60564 * 210.54184 * 22 3 2 35 35 H 1.08994 * 109.60909 * 330.69047 * 22 3 2 36 36 H 1.09003 * 111.12875 * 283.52125 * 23 22 3 37 37 H 1.09003 * 111.16522 * 159.36664 * 23 22 3 38 38 H 1.08992 * 110.33824 * 1.04770 * 25 3 2 39 39 H 1.08999 * 110.33739 * 123.19101 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4460 2.0896 -1.1568 5 8 1.2323 3.2729 -1.0375 6 8 1.1808 1.4734 -2.3198 7 6 0.7753 2.2561 -3.3544 8 6 -0.5594 2.2664 -3.7359 9 6 -0.9740 3.0653 -4.7845 10 6 -0.0600 3.8480 -5.4631 11 6 1.2766 3.8417 -5.0857 12 8 2.1738 4.6144 -5.7496 13 6 3.4304 4.6497 -5.2619 14 1 3.7052 4.0168 -4.4311 15 6 4.3698 5.4985 -5.8271 16 7 4.0350 6.2699 -6.8388 17 14 6.1109 5.5468 -5.1519 18 1 6.9470 4.5496 -5.8671 19 1 6.6810 6.9037 -5.3497 20 1 6.0887 5.2257 -3.7022 21 6 1.6939 3.0439 -4.0294 22 6 1.6370 2.0105 1.3049 23 6 2.7301 1.7179 2.3664 24 16 4.2547 1.8753 1.3488 25 6 3.5306 1.1733 -0.1829 26 1 -0.3634 0.4372 -0.9300 27 1 -0.3633 -1.0240 0.0863 28 1 -0.3633 0.5867 0.8437 29 1 -1.2755 1.6524 -3.2098 30 1 -2.0137 3.0749 -5.0764 31 1 -0.3859 4.4687 -6.2847 32 1 4.6924 6.8635 -7.2345 33 1 2.7328 3.0372 -3.7339 34 1 1.5714 3.0851 1.1342 35 1 0.6751 1.6397 1.6588 36 1 2.6280 0.7097 2.7680 37 1 2.7122 2.4599 3.1647 38 1 3.8098 0.1250 -0.2881 39 1 3.8582 1.7411 -1.0537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119410858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:30 Heat of formation + Delta-G solvation = -124.476706 kcal Electronic energy + Delta-G solvation = -25634.573857 eV Core-core repulsion = 21827.856911 eV Total energy + Delta-G solvation = -3806.716945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.86368 -40.92196 -39.88862 -38.63352 -37.50956 -35.13599 -34.38691 -31.72309 -31.21297 -30.63523 -27.73064 -27.51945 -27.05058 -25.14556 -23.53829 -22.84825 -21.24676 -20.23571 -19.87991 -19.28538 -18.27450 -17.89486 -17.71101 -16.95172 -16.89949 -16.39070 -16.29308 -15.95070 -15.84798 -15.60034 -15.19806 -14.91382 -14.69595 -14.55995 -14.40413 -13.78334 -13.52118 -13.46479 -13.33098 -13.18986 -13.08198 -13.01405 -12.81519 -12.59769 -12.33204 -12.22178 -12.00507 -11.89233 -11.56686 -11.29210 -10.93952 -10.87635 -9.87996 -9.22384 -8.89796 -8.57328 -6.26797 0.00539 0.47928 0.52447 0.63789 1.10901 1.27882 1.33991 1.39819 1.44719 2.09153 2.33764 2.65347 2.97557 3.03433 3.18213 3.29620 3.37468 3.68093 3.90733 3.95031 4.06114 4.11333 4.19217 4.24752 4.29715 4.40112 4.47261 4.56459 4.63844 4.65478 4.76472 4.84875 4.87205 4.96332 5.22510 5.31486 5.41696 5.47514 5.64169 5.89142 5.90320 6.48468 6.86511 7.60569 8.64746 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.004666 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.856432 B = 5999.380167 C = 8015.738641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.358 6.358 3 C 0.145 3.855 4 C 0.434 3.566 5 O -0.499 6.499 6 O -0.281 6.281 7 C 0.108 3.892 8 C -0.188 4.188 9 C -0.046 4.046 10 C -0.192 4.192 11 C 0.129 3.871 12 O -0.218 6.218 13 C -0.419 4.419 14 H 0.090 0.910 15 C -0.012 4.012 16 N -0.910 5.910 17 Si 1.010 2.990 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.262 1.262 21 C -0.252 4.252 22 C -0.153 4.153 23 C -0.043 4.043 24 S -0.305 6.305 25 C -0.062 4.062 26 H 0.038 0.962 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.133 0.867 32 H 0.276 0.724 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -13.744 18.440 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.276 6.276 3 C 0.102 3.898 4 C 0.276 3.724 5 O -0.385 6.385 6 O -0.195 6.195 7 C 0.067 3.933 8 C -0.207 4.207 9 C -0.063 4.063 10 C -0.211 4.211 11 C 0.078 3.922 12 O -0.124 6.124 13 C -0.495 4.495 14 H 0.107 0.893 15 C -0.211 4.211 16 N -0.547 5.547 17 Si 0.829 3.171 18 H -0.181 1.181 19 H -0.187 1.187 20 H -0.186 1.186 21 C -0.272 4.272 22 C -0.192 4.192 23 C -0.190 4.190 24 S -0.079 6.079 25 C -0.210 4.210 26 H 0.057 0.943 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.175 0.825 30 H 0.195 0.805 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.756 -12.818 18.383 23.407 hybrid contribution -0.142 0.287 -0.734 0.801 sum -6.898 -12.531 17.649 22.718 Atomic orbital electron populations 1.23375 0.78653 1.06009 1.01112 1.88093 1.22201 1.22971 1.94349 1.22192 0.93570 0.84279 0.89803 1.25473 0.74735 0.87754 0.84409 1.90728 1.47255 1.17755 1.82726 1.84657 1.76793 1.39320 1.18753 1.18475 0.93283 0.93628 0.87928 1.21089 0.92640 1.04563 1.02420 1.21103 1.00242 0.92242 0.92755 1.20737 0.89727 1.05767 1.04852 1.19688 0.91256 0.90452 0.90812 1.83959 1.19886 1.59522 1.49067 1.21648 0.84259 1.25545 1.18001 0.89306 1.26473 1.04332 0.94154 0.96158 1.70146 1.37118 1.24116 1.23318 0.84723 0.74582 0.79085 0.78726 1.18143 1.18705 1.18639 1.21159 1.00161 1.03611 1.02299 1.23029 1.02376 1.03005 0.90754 1.24460 0.88147 1.08229 0.98146 1.88193 1.24597 1.84285 1.10792 1.23894 0.90934 1.07325 0.98809 0.94333 0.85526 0.91157 0.82516 0.80469 0.84951 0.91439 0.87312 0.88860 0.85443 0.85817 0.84436 0.84380 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 10.23 113.37 1.16 1.22 16 2 O -0.36 -7.28 10.00 -135.37 -1.35 -8.63 16 3 C 0.14 3.43 0.97 -11.32 -0.01 3.42 16 4 C 0.43 14.10 5.07 71.24 0.36 14.47 16 5 O -0.50 -19.56 15.10 21.95 0.33 -19.22 16 6 O -0.28 -9.75 8.66 9.64 0.08 -9.67 16 7 C 0.11 4.26 5.10 22.49 0.11 4.37 16 8 C -0.19 -6.10 9.99 22.40 0.22 -5.88 16 9 C -0.05 -1.44 10.03 22.24 0.22 -1.22 16 10 C -0.19 -7.92 9.99 22.40 0.22 -7.70 16 11 C 0.13 6.61 6.64 22.56 0.15 6.76 16 12 O -0.22 -13.36 9.76 -22.80 -0.22 -13.58 16 13 C -0.42 -25.30 9.49 67.92 0.64 -24.66 16 14 H 0.09 5.14 5.20 -2.91 -0.02 5.13 16 15 C -0.01 -0.70 5.49 84.83 0.47 -0.24 16 16 N -0.91 -55.99 13.67 21.61 0.30 -55.69 16 17 Si 1.01 44.40 29.55 68.60 2.03 46.43 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 C -0.25 -12.10 8.77 22.48 0.20 -11.91 16 22 C -0.15 -2.78 5.27 31.31 0.16 -2.61 16 23 C -0.04 -0.61 7.52 72.72 0.55 -0.06 16 24 S -0.30 -7.11 23.22 -56.49 -1.31 -8.42 16 25 C -0.06 -1.52 6.76 72.22 0.49 -1.03 16 26 H 0.04 0.72 6.38 -2.38 -0.02 0.71 16 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 0.76 5.97 -2.39 -0.01 0.75 16 29 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 30 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 32 H 0.28 15.49 8.31 -92.70 -0.77 14.71 16 33 H 0.11 5.56 5.64 -2.91 -0.02 5.55 16 34 H 0.09 2.13 6.77 -2.38 -0.02 2.12 16 35 H 0.13 1.57 5.74 -2.39 -0.01 1.55 16 36 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.14 2.92 7.92 -2.39 -0.02 2.90 16 39 H 0.09 2.70 7.63 -2.39 -0.02 2.68 16 Total: -1.00 -77.78 340.77 5.90 -71.89 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.09 Total: 21.97 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.95 Total: -25.08 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.30 Total: -55.69 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -1.16 Total: -51.10 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -7.11 SS G_CDS: -1.31 Total: -8.42 kcal Total: -77.78 5.90 -71.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119410858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.590 kcal (2) G-P(sol) polarization free energy of solvation -77.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds