Wall clock time and date at job start Tue Mar 31 2020 14:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00079 * 2 1 4 4 C 1.50699 * 109.60477 * 64.25846 * 3 2 1 5 5 O 1.20824 * 120.00302 * 216.98147 * 4 3 2 6 6 O 1.34268 * 119.99722 * 36.98816 * 4 3 2 7 7 C 1.35930 * 116.99836 * 175.00697 * 6 4 3 8 8 C 1.38820 * 120.02223 * 255.70421 * 7 6 4 9 9 C 1.38184 * 120.08245 * 180.27703 * 8 7 6 10 10 C 1.38156 * 120.12124 * 359.77078 * 9 8 7 11 11 C 1.38896 * 120.04275 * 359.97438 * 10 9 8 12 12 O 1.35746 * 120.04089 * 179.97438 * 11 10 9 13 13 C 1.34826 * 117.00153 * 174.05923 * 12 11 10 14 14 H 1.08005 * 119.99919 * 5.10250 * 13 12 11 15 15 C 1.38651 * 120.00441 * 185.10241 * 13 12 11 16 16 N 1.31556 * 120.00299 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46872 * 89.99944 * 17 15 13 19 19 H 1.48499 * 109.47252 * 210.00001 * 17 15 13 20 20 H 1.48502 * 109.46820 * 329.99793 * 17 15 13 21 21 C 1.38574 * 120.01570 * 75.47613 * 7 6 4 22 22 C 1.53863 * 109.46403 * 304.01508 * 3 2 1 23 23 C 1.55135 * 106.89737 * 287.41698 * 22 3 2 24 24 S 1.83453 * 102.20725 * 317.88569 * 23 22 3 25 25 C 1.54271 * 109.61077 * 184.59816 * 3 2 1 26 26 H 1.08995 * 109.47002 * 305.70045 * 1 2 3 27 27 H 1.09003 * 109.47088 * 65.70473 * 1 2 3 28 28 H 1.08999 * 109.46857 * 185.69607 * 1 2 3 29 29 H 1.07999 * 119.96173 * 0.03096 * 8 7 6 30 30 H 1.07994 * 119.94014 * 179.74537 * 9 8 7 31 31 H 1.08005 * 119.97919 * 179.97438 * 10 9 8 32 32 H 0.96999 * 120.00694 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.06304 * 359.97438 * 21 7 6 34 34 H 1.08997 * 109.97341 * 46.78321 * 22 3 2 35 35 H 1.09000 * 109.97110 * 168.05929 * 22 3 2 36 36 H 1.09003 * 110.85760 * 199.70451 * 23 22 3 37 37 H 1.09008 * 110.85229 * 76.06673 * 23 22 3 38 38 H 1.08996 * 110.40016 * 210.57897 * 25 3 2 39 39 H 1.09000 * 110.40158 * 333.00224 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6527 2.0182 1.2788 5 8 1.4229 3.2043 1.2654 6 8 1.5896 1.3350 2.4329 7 6 1.3648 2.0543 3.5642 8 6 2.4073 2.3071 4.4453 9 6 2.1790 3.0333 5.5985 10 6 0.9138 3.5140 5.8760 11 6 -0.1319 3.2686 4.9954 12 8 -1.3751 3.7406 5.2684 13 6 -2.3155 3.5745 4.3166 14 1 -2.0863 3.0125 3.4232 15 6 -3.5769 4.1251 4.4847 16 7 -4.4946 3.9626 3.5562 17 14 -3.9731 5.0977 6.0295 18 1 -3.6492 6.5301 5.8093 19 1 -5.4178 4.9596 6.3445 20 1 -3.1674 4.5764 7.1628 21 6 0.0957 2.5398 3.8363 22 6 1.4775 2.1039 -1.2025 23 6 2.1477 1.5114 -2.4699 24 16 3.8792 1.2674 -1.9150 25 6 3.5442 1.1893 -0.1165 26 1 -0.3633 0.5997 0.8345 27 1 -0.3633 0.4228 -0.9367 28 1 -0.3633 -1.0226 0.1020 29 1 3.3973 1.9323 4.2311 30 1 2.9908 3.2250 6.2844 31 1 0.7378 4.0810 6.7783 32 1 -5.3772 4.3474 3.6739 33 1 -0.7157 2.3476 3.1499 34 1 0.3947 1.9978 -1.2696 35 1 1.7431 3.1559 -1.0980 36 1 2.1018 2.2173 -3.2992 37 1 1.6898 0.5604 -2.7424 38 1 4.0282 2.0203 0.3965 39 1 3.8854 0.2383 0.2926 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119410859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:33 Heat of formation + Delta-G solvation = -104.968389 kcal Electronic energy + Delta-G solvation = -25570.397277 eV Core-core repulsion = 21764.526276 eV Total energy + Delta-G solvation = -3805.871001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45642 -39.51553 -38.63290 -37.20262 -35.98316 -34.17812 -32.49122 -30.67169 -29.80197 -29.26032 -26.76334 -26.05461 -25.39283 -23.89737 -21.89402 -21.42433 -20.17938 -18.66965 -18.21159 -17.84356 -17.23859 -16.61240 -16.36881 -15.72912 -15.49601 -15.39570 -14.95053 -14.43901 -14.19799 -14.08817 -13.87920 -13.72788 -13.43817 -13.33256 -12.71173 -12.64480 -12.45657 -12.39934 -12.32602 -12.16775 -11.75158 -11.52417 -11.39574 -11.21131 -10.89734 -10.75900 -10.55868 -10.47383 -10.34064 -9.89684 -9.60360 -8.98413 -8.35527 -7.96975 -7.60078 -6.52403 -4.20290 1.35856 1.55815 1.76840 2.01073 2.12920 2.70972 3.15341 3.19262 3.21247 3.33019 3.99178 4.14655 4.16532 4.22609 4.41005 4.58620 4.71451 4.75712 4.96724 4.98343 5.03649 5.13332 5.22067 5.29809 5.41092 5.44231 5.50751 5.59527 5.66834 5.76768 5.96523 6.09397 6.28619 6.53899 6.67841 6.83978 6.90478 6.95962 7.29999 7.61502 7.84886 7.94380 8.81692 9.39731 10.54868 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003639 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.655947 B = 7692.600948 C = 8741.658954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.350 6.350 3 C 0.130 3.870 4 C 0.439 3.561 5 O -0.467 6.467 6 O -0.280 6.280 7 C 0.113 3.887 8 C -0.202 4.202 9 C -0.066 4.066 10 C -0.184 4.184 11 C 0.170 3.830 12 O -0.209 6.209 13 C -0.393 4.393 14 H 0.104 0.896 15 C 0.066 3.934 16 N -0.875 5.875 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.258 1.258 21 C -0.218 4.218 22 C -0.152 4.152 23 C -0.065 4.065 24 S -0.263 6.263 25 C -0.060 4.060 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.281 0.719 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -6.119 -8.006 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.268 6.268 3 C 0.087 3.913 4 C 0.279 3.721 5 O -0.350 6.350 6 O -0.194 6.194 7 C 0.073 3.927 8 C -0.221 4.221 9 C -0.084 4.084 10 C -0.204 4.204 11 C 0.117 3.883 12 O -0.113 6.113 13 C -0.468 4.468 14 H 0.121 0.879 15 C -0.138 4.138 16 N -0.512 5.512 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.182 1.182 21 C -0.238 4.238 22 C -0.191 4.191 23 C -0.213 4.213 24 S -0.037 6.037 25 C -0.208 4.208 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.522 -5.838 -8.507 17.008 hybrid contribution -1.754 0.667 1.162 2.207 sum 11.768 -5.171 -7.344 14.804 Atomic orbital electron populations 1.23056 0.79541 1.04338 1.00972 1.88067 1.20976 1.23410 1.94382 1.22246 0.94495 0.84963 0.89563 1.24410 0.74800 0.86998 0.85912 1.90766 1.42113 1.15997 1.86137 1.84631 1.81273 1.39505 1.14041 1.18307 0.93350 0.96037 0.85054 1.20584 0.97580 1.06185 0.97772 1.20505 0.95878 0.96105 0.95894 1.20355 0.91476 1.07135 1.01396 1.18837 0.85567 0.91862 0.92024 1.83593 1.15156 1.70257 1.42311 1.20734 0.90537 1.35784 0.99752 0.87861 1.24471 0.94152 0.96600 0.98549 1.69635 1.04674 1.43586 1.33299 0.86165 0.77658 0.80333 0.82684 1.19720 1.20607 1.18228 1.21286 0.96875 1.04466 1.01140 1.23144 1.03113 1.02104 0.90711 1.24205 0.92524 1.04886 0.99654 1.87564 1.14381 1.96813 1.04966 1.23980 0.92571 1.08188 0.96104 0.93017 0.92913 0.88011 0.86429 0.85660 0.85749 0.90870 0.84606 0.87944 0.87183 0.86945 0.88248 0.87011 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.20 101.05 1.03 1.22 16 2 O -0.35 -4.40 10.03 -48.22 -0.48 -4.88 16 3 C 0.13 1.65 0.79 -90.66 -0.07 1.57 16 4 C 0.44 7.24 5.28 36.01 0.19 7.43 16 5 O -0.47 -9.08 15.28 -18.75 -0.29 -9.37 16 6 O -0.28 -4.98 9.67 -28.61 -0.28 -5.26 16 7 C 0.11 2.23 5.18 -39.24 -0.20 2.02 16 8 C -0.20 -3.48 9.98 -39.39 -0.39 -3.87 16 9 C -0.07 -1.08 10.03 -39.63 -0.40 -1.48 16 10 C -0.18 -3.54 9.99 -39.37 -0.39 -3.94 16 11 C 0.17 3.93 6.64 -39.13 -0.26 3.67 16 12 O -0.21 -5.45 8.58 0.07 0.00 -5.45 16 13 C -0.39 -11.02 9.95 30.88 0.31 -10.71 16 14 H 0.10 3.00 5.44 -52.48 -0.29 2.71 16 15 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 16 N -0.87 -24.87 13.96 55.48 0.77 -24.09 16 17 Si 0.91 21.28 28.62 -169.99 -4.86 16.41 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.22 -4.90 8.59 -39.25 -0.34 -5.24 16 22 C -0.15 -1.66 4.81 -25.15 -0.12 -1.78 16 23 C -0.06 -0.57 7.27 38.29 0.28 -0.30 16 24 S -0.26 -2.81 23.26 -107.50 -2.50 -5.31 16 25 C -0.06 -0.67 6.51 37.82 0.25 -0.42 16 26 H 0.05 0.72 7.01 -51.93 -0.36 0.35 16 27 H 0.05 0.50 6.40 -51.93 -0.33 0.17 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.28 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.14 3.27 5.64 -52.49 -0.30 2.97 16 34 H 0.10 1.06 6.00 -51.93 -0.31 0.75 16 35 H 0.11 1.29 7.46 -51.93 -0.39 0.90 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.11 1.19 7.89 -51.93 -0.41 0.78 16 39 H 0.12 1.25 8.08 -51.93 -0.42 0.83 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -31.19 342.29 -7.18 -38.36 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.48 Total: 4.50 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.22 Total: -10.08 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.77 Total: -24.09 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.05 Total: -24.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.50 Total: -5.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.19 -7.18 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119410859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.605 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds